PDB Short entry for 1LQO HEADER TRANSFERASE 11-MAY-02 1LQO TITLE CRYSTAL STRUTCURE OF THE FOSFOMYCIN RESISTANCE PROTEIN A (FOSA) TITLE 2 CONTAINING BOUND THALLIUM CATIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE FOSFOMYCIN RESISTANCE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FOSA; COMPND 5 EC: 2.5.1.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: FOSA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-20 KEYWDS MANGANESE BINDING, THALLIUM BINDING LOOP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.L.RIFE,R.E.PHARRIS,M.E.NEWCOMER,R.N.ARMSTRONG REVDAT 5 14-FEB-24 1LQO 1 REMARK LINK REVDAT 4 24-FEB-09 1LQO 1 VERSN REVDAT 3 13-MAY-03 1LQO 1 TITLE REMARK REVDAT 2 11-DEC-02 1LQO 1 JRNL REVDAT 1 11-SEP-02 1LQO 0 JRNL AUTH C.L.RIFE,R.E.PHARRIS,M.E.NEWCOMER,R.N.ARMSTRONG JRNL TITL CRYSTAL STRUCTURE OF A GENOMICALLY ENCODED FOSFOMYCIN JRNL TITL 2 RESISTANCE PROTEIN (FOSA) AT 1.19 A RESOLUTION BY MAD JRNL TITL 3 PHASING OFF THE L-III EDGE OF TL(+) JRNL REF J.AM.CHEM.SOC. V. 124 11001 2002 JRNL REFN ISSN 0002-7863 JRNL PMID 12224946 JRNL DOI 10.1021/JA026879V REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 17952 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 966 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1077 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2124 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : 2.06000 REMARK 3 B33 (A**2) : -1.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.208 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.670 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.786 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2209 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1948 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2999 ; 2.342 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4459 ; 0.880 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 270 ; 4.734 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 335 ;13.745 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 297 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2544 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 548 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 492 ; 0.284 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1870 ; 0.220 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2 ; 0.451 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 173 ; 0.177 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.249 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.337 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 65 ; 0.307 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.327 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): 1 ; 0.161 ; 0.500 REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1332 ; 1.117 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2085 ; 1.928 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 877 ; 2.880 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 914 ; 4.545 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1LQO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-02. REMARK 100 THE DEPOSITION ID IS D_1000016191. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9780, 0.9789, 0.9537 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR, BENT CYLINDRICAL REMARK 200 SI-MIRROR (RH COATING) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19809 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.17000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 11.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WELL CONTAINED 40% PENTAERYTHRITOL REMARK 280 PROPOXYLATE 629, 0.08M K2HPO4. DROP CONTAINED 0.002 M MNCL2, REMARK 280 0.002M FOSFOMYCIN, 10 MG/ML FOSA, PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.89850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.47900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.93700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.47900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.89850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.93700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER CONSISTING OF CHAINS A REMARK 300 AND B. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 135 REMARK 465 ASP B 135 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C GLU B 52 CD PRO B 53 1.62 REMARK 500 OH TYR A 62 O4 PO4 A 302 1.83 REMARK 500 OH TYR B 62 NZ LYS B 90 1.94 REMARK 500 O1 PO4 A 301 O1 PO4 A 302 2.02 REMARK 500 O2 PO4 A 202 O3 PO4 B 201 2.04 REMARK 500 O3 PO4 A 301 O4 PO4 A 302 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN B 54 O ALA B 126 3655 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 24 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 103 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 GLU B 52 CA - C - N ANGL. DEV. = 21.3 DEGREES REMARK 500 GLU B 52 O - C - N ANGL. DEV. = -17.6 DEGREES REMARK 500 PRO B 53 C - N - CA ANGL. DEV. = 40.4 DEGREES REMARK 500 PRO B 53 C - N - CD ANGL. DEV. = -49.4 DEGREES REMARK 500 PRO B 53 N - CA - C ANGL. DEV. = -27.3 DEGREES REMARK 500 ASP B 115 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 52 72.63 -158.08 REMARK 500 PRO B 53 -92.69 179.76 REMARK 500 GLN B 54 12.38 -49.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU B 52 13.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL A 501 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 7 NE2 REMARK 620 2 CYS A 48 SG 97.2 REMARK 620 3 PO4 A 202 O3 112.0 72.5 REMARK 620 4 PO4 A 202 O4 57.3 89.2 55.7 REMARK 620 5 PO4 B 201 O3 100.3 133.6 61.1 66.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 7 NE2 REMARK 620 2 PO4 A 202 O4 78.5 REMARK 620 3 HIS B 64 NE2 115.6 89.1 REMARK 620 4 GLU B 110 OE1 95.9 174.2 92.2 REMARK 620 5 PO4 B 201 O1 127.0 80.6 112.1 104.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 64 NE2 REMARK 620 2 GLU A 110 OE1 89.1 REMARK 620 3 PO4 A 301 O3 109.8 98.0 REMARK 620 4 PO4 A 302 O2 92.3 172.3 88.6 REMARK 620 5 HIS B 7 NE2 115.9 91.0 133.6 81.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL A 602 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 92 OD1 REMARK 620 2 SER A 94 O 73.2 REMARK 620 3 SER A 94 OG 94.6 70.0 REMARK 620 4 GLU A 95 O 133.5 62.9 84.7 REMARK 620 5 GLY A 96 O 88.1 70.3 137.5 64.0 REMARK 620 6 SER A 98 OG 93.1 150.4 138.5 117.6 83.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL B 601 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PO4 A 301 O1 REMARK 620 2 PO4 A 302 O2 53.8 REMARK 620 3 PO4 A 302 O1 48.2 53.3 REMARK 620 4 HIS B 7 NE2 90.6 59.4 112.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 TL B 502 TL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 92 OD1 REMARK 620 2 SER B 94 O 70.8 REMARK 620 3 SER B 94 OG 84.5 71.2 REMARK 620 4 GLU B 95 O 131.5 63.1 94.0 REMARK 620 5 GLY B 96 O 90.4 69.4 139.6 60.4 REMARK 620 6 SER B 98 OG 93.0 149.1 135.0 119.3 85.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TL B 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LQK RELATED DB: PDB REMARK 900 1LQK IS THE HIGH RESOLUTION STRUCTURE OF THE FOSFOMYCIN RESISTANCE REMARK 900 PROTEIN A WITH BOUND PHOSPHATE. REMARK 900 RELATED ID: 1LQP RELATED DB: PDB REMARK 900 1LQP IS THE STRUCTURE OF THE FOSFOMYCIN RESISTANCE PROTEIN A WITH REMARK 900 BOUND FOSFOMYCIN. DBREF 1LQO A 1 135 UNP Q9I4K6 FOSA_PSEAE 1 135 DBREF 1LQO B 1 135 UNP Q9I4K6 FOSA_PSEAE 1 135 SEQRES 1 A 135 MET LEU THR GLY LEU ASN HIS LEU THR LEU ALA VAL ALA SEQRES 2 A 135 ASP LEU PRO ALA SER ILE ALA PHE TYR ARG ASP LEU LEU SEQRES 3 A 135 GLY PHE ARG LEU GLU ALA ARG TRP ASP GLN GLY ALA TYR SEQRES 4 A 135 LEU GLU LEU GLY SER LEU TRP LEU CYS LEU SER ARG GLU SEQRES 5 A 135 PRO GLN TYR GLY GLY PRO ALA ALA ASP TYR THR HIS TYR SEQRES 6 A 135 ALA PHE GLY ILE ALA ALA ALA ASP PHE ALA ARG PHE ALA SEQRES 7 A 135 ALA GLN LEU ARG ALA HIS GLY VAL ARG GLU TRP LYS GLN SEQRES 8 A 135 ASN ARG SER GLU GLY ASP SER PHE TYR PHE LEU ASP PRO SEQRES 9 A 135 ASP GLY HIS ARG LEU GLU ALA HIS VAL GLY ASP LEU ARG SEQRES 10 A 135 SER ARG LEU ALA ALA CYS ARG GLN ALA PRO TYR ALA GLY SEQRES 11 A 135 MET ARG PHE ALA ASP SEQRES 1 B 135 MET LEU THR GLY LEU ASN HIS LEU THR LEU ALA VAL ALA SEQRES 2 B 135 ASP LEU PRO ALA SER ILE ALA PHE TYR ARG ASP LEU LEU SEQRES 3 B 135 GLY PHE ARG LEU GLU ALA ARG TRP ASP GLN GLY ALA TYR SEQRES 4 B 135 LEU GLU LEU GLY SER LEU TRP LEU CYS LEU SER ARG GLU SEQRES 5 B 135 PRO GLN TYR GLY GLY PRO ALA ALA ASP TYR THR HIS TYR SEQRES 6 B 135 ALA PHE GLY ILE ALA ALA ALA ASP PHE ALA ARG PHE ALA SEQRES 7 B 135 ALA GLN LEU ARG ALA HIS GLY VAL ARG GLU TRP LYS GLN SEQRES 8 B 135 ASN ARG SER GLU GLY ASP SER PHE TYR PHE LEU ASP PRO SEQRES 9 B 135 ASP GLY HIS ARG LEU GLU ALA HIS VAL GLY ASP LEU ARG SEQRES 10 B 135 SER ARG LEU ALA ALA CYS ARG GLN ALA PRO TYR ALA GLY SEQRES 11 B 135 MET ARG PHE ALA ASP HET PO4 A 202 5 HET PO4 A 301 5 HET PO4 A 302 5 HET MN A 402 1 HET TL A 501 1 HET TL A 602 1 HET TL A 701 1 HET PO4 B 201 5 HET MN B 401 1 HET TL B 502 1 HET TL B 601 1 HET TL B 702 1 HETNAM PO4 PHOSPHATE ION HETNAM MN MANGANESE (II) ION HETNAM TL THALLIUM (I) ION FORMUL 3 PO4 4(O4 P 3-) FORMUL 6 MN 2(MN 2+) FORMUL 7 TL 6(TL 1+) FORMUL 15 HOH *126(H2 O) HELIX 1 1 ASP A 14 LEU A 25 1 12 HELIX 2 2 ASP A 73 HIS A 84 1 12 HELIX 3 3 ASP A 115 ALA A 126 1 12 HELIX 4 4 ASP B 14 LEU B 25 1 12 HELIX 5 5 ASP B 73 HIS B 84 1 12 HELIX 6 6 ASP B 115 ALA B 126 1 12 SHEET 1 A 9 GLU B 88 LYS B 90 0 SHEET 2 A 9 SER B 98 LEU B 102 -1 O TYR B 100 N LYS B 90 SHEET 3 A 9 ARG B 108 HIS B 112 -1 O LEU B 109 N PHE B 101 SHEET 4 A 9 HIS B 64 ILE B 69 1 N PHE B 67 O GLU B 110 SHEET 5 A 9 LEU A 2 VAL A 12 -1 N THR A 9 O HIS B 64 SHEET 6 A 9 LEU A 45 ARG A 51 1 O CYS A 48 N LEU A 8 SHEET 7 A 9 GLY A 37 LEU A 42 -1 N LEU A 40 O LEU A 47 SHEET 8 A 9 ARG A 29 TRP A 34 -1 N ARG A 29 O GLU A 41 SHEET 9 A 9 ARG B 132 PHE B 133 -1 O ARG B 132 N ARG A 33 SHEET 1 B 9 GLU A 88 LYS A 90 0 SHEET 2 B 9 SER A 98 LEU A 102 -1 O TYR A 100 N LYS A 90 SHEET 3 B 9 ARG A 108 HIS A 112 -1 O LEU A 109 N PHE A 101 SHEET 4 B 9 HIS A 64 ILE A 69 1 N PHE A 67 O GLU A 110 SHEET 5 B 9 LEU B 2 VAL B 12 -1 O ASN B 6 N ALA A 66 SHEET 6 B 9 LEU B 45 ARG B 51 1 O SER B 50 N LEU B 10 SHEET 7 B 9 GLY B 37 LEU B 42 -1 N LEU B 40 O LEU B 47 SHEET 8 B 9 ARG B 29 TRP B 34 -1 N TRP B 34 O GLY B 37 SHEET 9 B 9 ARG A 132 PHE A 133 -1 N ARG A 132 O ARG B 33 LINK NE2 HIS A 7 TL TL A 501 1555 1555 2.98 LINK NE2 HIS A 7 MN MN B 401 1555 1555 2.24 LINK SG CYS A 48 TL TL A 501 1555 1555 3.26 LINK OG SER A 50 TL TL B 702 1555 1555 3.09 LINK NE2 HIS A 64 MN MN A 402 1555 1555 2.21 LINK OD1 ASN A 92 TL TL A 602 1555 1555 2.58 LINK O SER A 94 TL TL A 602 1555 1555 3.07 LINK OG SER A 94 TL TL A 602 1555 1555 2.80 LINK O GLU A 95 TL TL A 602 1555 1555 2.92 LINK O GLY A 96 TL TL A 602 1555 1555 2.56 LINK OG SER A 98 TL TL A 602 1555 1555 2.82 LINK OE1 GLU A 110 MN MN A 402 1555 1555 2.10 LINK O3 PO4 A 202 TL TL A 501 1555 1555 2.46 LINK O4 PO4 A 202 TL TL A 501 1555 1555 2.78 LINK O4 PO4 A 202 MN MN B 401 1555 1555 2.13 LINK O3 PO4 A 301 MN MN A 402 1555 1555 1.97 LINK O1 PO4 A 301 TL TL B 601 1555 1555 1.96 LINK O2 PO4 A 302 MN MN A 402 1555 1555 2.12 LINK O2 PO4 A 302 TL TL B 601 1555 1555 2.72 LINK O1 PO4 A 302 TL TL B 601 1555 1555 2.70 LINK MN MN A 402 NE2 HIS B 7 1555 1555 2.35 LINK TL TL A 501 O3 PO4 B 201 1555 1555 2.38 LINK NE2 HIS B 7 TL TL B 601 1555 1555 3.14 LINK NE2 HIS B 64 MN MN B 401 1555 1555 2.19 LINK OD1 ASN B 92 TL TL B 502 1555 1555 2.59 LINK O SER B 94 TL TL B 502 1555 1555 2.83 LINK OG SER B 94 TL TL B 502 1555 1555 2.45 LINK O GLU B 95 TL TL B 502 1555 1555 3.04 LINK O GLY B 96 TL TL B 502 1555 1555 2.85 LINK OG SER B 98 TL TL B 502 1555 1555 2.89 LINK OE1 GLU B 110 MN MN B 401 1555 1555 2.09 LINK O1 PO4 B 201 MN MN B 401 1555 1555 2.20 CISPEP 1 GLU B 52 PRO B 53 0 -18.85 SITE 1 AC1 9 PO4 A 202 TL A 501 HIS B 64 SER B 94 SITE 2 AC1 9 TYR B 100 GLU B 110 ARG B 119 MN B 401 SITE 3 AC1 9 TL B 502 SITE 1 AC2 11 HIS A 7 THR A 9 TYR A 39 CYS A 48 SITE 2 AC2 11 TL A 501 HOH A 738 HOH A 753 TYR B 62 SITE 3 AC2 11 HIS B 64 PO4 B 201 MN B 401 SITE 1 AC3 10 TYR A 62 HIS A 64 SER A 94 TYR A 100 SITE 2 AC3 10 GLU A 110 ARG A 119 PO4 A 302 MN A 402 SITE 3 AC3 10 TL A 602 TL B 601 SITE 1 AC4 11 TYR A 62 HIS A 64 LYS A 90 PO4 A 301 SITE 2 AC4 11 MN A 402 HOH A 749 HOH A 768 HIS B 7 SITE 3 AC4 11 THR B 9 CYS B 48 TL B 601 SITE 1 AC5 5 HIS A 7 PO4 A 202 HIS B 64 GLU B 110 SITE 2 AC5 5 PO4 B 201 SITE 1 AC6 5 HIS A 64 GLU A 110 PO4 A 301 PO4 A 302 SITE 2 AC6 5 HIS B 7 SITE 1 AC7 6 HIS A 7 TRP A 46 CYS A 48 PO4 A 202 SITE 2 AC7 6 ARG B 119 PO4 B 201 SITE 1 AC8 7 ASN B 92 SER B 94 GLU B 95 GLY B 96 SITE 2 AC8 7 SER B 98 TYR B 100 PO4 B 201 SITE 1 AC9 6 ARG A 119 PO4 A 301 PO4 A 302 HIS B 7 SITE 2 AC9 6 TRP B 46 CYS B 48 SITE 1 BC1 8 ASN A 92 SER A 94 GLU A 95 GLY A 96 SITE 2 BC1 8 SER A 98 TYR A 100 HIS A 112 PO4 A 301 SITE 1 BC2 2 SER A 44 SER B 44 SITE 1 BC3 2 SER A 50 TYR B 62 CRYST1 55.797 65.874 76.958 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017922 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012994 0.00000