PDB Short entry for 1LZJ HEADER TRANSFERASE 10-JUN-02 1LZJ TITLE GLYCOSYLTRANSFERASE B + UDP + H ANTIGEN ACCEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYLTRANSFERASE B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (RESIDUES 64-354); COMPND 5 SYNONYM: B-SPECIFIC ALPHA 1->3 GALACTOSYLTRANSFERASE; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: N-TERMINAL TRUNCATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOPROTEIN, TRANSMEMBRANE, SIGNAL-ANCHOR, BLOOD GROUP ANTIGEN, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.I.PATENAUDE,N.O.L.SETO,S.N.BORISOVA,A.SZPACENKO,S.L.MARCUS, AUTHOR 2 M.M.PALCIC,S.V.EVANS REVDAT 6 21-DEC-22 1LZJ 1 SEQADV HETSYN REVDAT 5 29-JUL-20 1LZJ 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 13-JUL-11 1LZJ 1 VERSN REVDAT 3 24-FEB-09 1LZJ 1 VERSN REVDAT 2 01-APR-03 1LZJ 1 JRNL REVDAT 1 28-AUG-02 1LZJ 0 JRNL AUTH S.I.PATENAUDE,N.O.SETO,S.N.BORISOVA,A.SZPACENKO,S.L.MARCUS, JRNL AUTH 2 M.M.PALCIC,S.V.EVANS JRNL TITL THE STRUCTURAL BASIS FOR SPECIFICITY IN HUMAN ABO(H) BLOOD JRNL TITL 2 GROUP BIOSYNTHESIS. JRNL REF NAT.STRUCT.BIOL. V. 9 685 2002 JRNL REFN ISSN 1072-8368 JRNL PMID 12198488 JRNL DOI 10.1038/NSB832 REMARK 2 REMARK 2 RESOLUTION. 1.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 65709 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 6678 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7308 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 800 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2147 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 388 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.14 REMARK 3 ESD FROM SIGMAA (A) : 0.12 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.15 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.13 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 2.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 87.38 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1LZJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-02. REMARK 100 THE DEPOSITION ID IS D_1000016416. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.15 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72904 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.320 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ADA, MANGANESE CHLORIDE, AMMONIUM REMARK 280 SULFATE, MPD, GLYCEROL, PEG 4000, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.76500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.76500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.37000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.74000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.37000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.74000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.76500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.37000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.74000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 39.76500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.37000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.74000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -243.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 52.74000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 39.76500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 177 REMARK 465 TYR A 178 REMARK 465 LYS A 179 REMARK 465 ARG A 180 REMARK 465 TRP A 181 REMARK 465 GLN A 182 REMARK 465 ASP A 183 REMARK 465 VAL A 184 REMARK 465 SER A 185 REMARK 465 MET A 186 REMARK 465 ARG A 187 REMARK 465 ARG A 188 REMARK 465 MET A 189 REMARK 465 GLU A 190 REMARK 465 MET A 191 REMARK 465 ILE A 192 REMARK 465 SER A 193 REMARK 465 ASP A 194 REMARK 465 PHE A 195 REMARK 465 CYS A 196 REMARK 465 LYS A 346 REMARK 465 ASN A 347 REMARK 465 HIS A 348 REMARK 465 GLN A 349 REMARK 465 ALA A 350 REMARK 465 VAL A 351 REMARK 465 ARG A 352 REMARK 465 ASN A 353 REMARK 465 PRO A 354 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 734 O HOH A 805 1.73 REMARK 500 OE1 GLU A 242 O HOH A 804 2.02 REMARK 500 O HOH A 553 O HOH A 895 2.07 REMARK 500 O HOH A 795 O HOH A 835 2.17 REMARK 500 O HOH A 605 O HOH A 844 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 522 O HOH A 522 3655 2.15 REMARK 500 NH1 ARG A 199 O HOH A 849 8456 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 124 -128.80 52.27 REMARK 500 THR A 245 48.31 -85.90 REMARK 500 PHE A 269 101.35 -161.60 REMARK 500 HIS A 301 -130.21 50.19 REMARK 500 HIS A 301 -133.13 50.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 146 0.24 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 401 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 119 OG1 REMARK 620 2 CYS A 209 SG 88.2 REMARK 620 3 HOH A 719 O 93.2 177.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 404 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 210 N REMARK 620 2 VAL A 210 O 46.7 REMARK 620 3 HOH A 629 O 71.5 90.3 REMARK 620 4 HOH A 635 O 135.1 90.2 102.1 REMARK 620 5 HOH A 661 O 67.5 65.8 138.5 110.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 406 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 211 OD2 REMARK 620 2 ASP A 213 OD2 100.5 REMARK 620 3 ASP A 213 OD1 151.1 51.1 REMARK 620 4 UDP A 475 O1A 96.4 79.7 75.3 REMARK 620 5 UDP A 475 O3B 92.1 166.0 115.6 93.0 REMARK 620 6 HOH A 708 O 89.2 99.5 99.9 174.4 86.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 402 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 284 SG REMARK 620 2 CYS A 284 SG 60.6 REMARK 620 3 HOH A 663 O 173.7 113.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 403 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 288 SD REMARK 620 2 HOH A 713 O 141.3 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LZ0 RELATED DB: PDB REMARK 900 GLYCOSYLTRANSFERASE A REMARK 900 RELATED ID: 1LZ7 RELATED DB: PDB REMARK 900 GLYCOSYLTRANSFERASE B REMARK 900 RELATED ID: 1LZI RELATED DB: PDB REMARK 900 GLYCOSYLTRANSFERASE A + UDP + H ANTIGEN ACCEPTOR DBREF 1LZJ A 64 354 GB 4590454 AAD26574 64 354 SEQADV 1LZJ MET A 63 GB 4590454 INITIATING METHIONINE SEQRES 1 A 292 MET VAL SER LEU PRO ARG MET VAL TYR PRO GLN PRO LYS SEQRES 2 A 292 VAL LEU THR PRO CYS ARG LYS ASP VAL LEU VAL VAL THR SEQRES 3 A 292 PRO TRP LEU ALA PRO ILE VAL TRP GLU GLY THR PHE ASN SEQRES 4 A 292 ILE ASP ILE LEU ASN GLU GLN PHE ARG LEU GLN ASN THR SEQRES 5 A 292 THR ILE GLY LEU THR VAL PHE ALA ILE LYS LYS TYR VAL SEQRES 6 A 292 ALA PHE LEU LYS LEU PHE LEU GLU THR ALA GLU LYS HIS SEQRES 7 A 292 PHE MET VAL GLY HIS ARG VAL HIS TYR TYR VAL PHE THR SEQRES 8 A 292 ASP GLN PRO ALA ALA VAL PRO ARG VAL THR LEU GLY THR SEQRES 9 A 292 GLY ARG GLN LEU SER VAL LEU GLU VAL GLY ALA TYR LYS SEQRES 10 A 292 ARG TRP GLN ASP VAL SER MET ARG ARG MET GLU MET ILE SEQRES 11 A 292 SER ASP PHE CYS GLU ARG ARG PHE LEU SER GLU VAL ASP SEQRES 12 A 292 TYR LEU VAL CYS VAL ASP VAL ASP MET GLU PHE ARG ASP SEQRES 13 A 292 HIS VAL GLY VAL GLU ILE LEU THR PRO LEU PHE GLY THR SEQRES 14 A 292 LEU HIS PRO SER PHE TYR GLY SER SER ARG GLU ALA PHE SEQRES 15 A 292 THR TYR GLU ARG ARG PRO GLN SER GLN ALA TYR ILE PRO SEQRES 16 A 292 LYS ASP GLU GLY ASP PHE TYR TYR MET GLY ALA PHE PHE SEQRES 17 A 292 GLY GLY SER VAL GLN GLU VAL GLN ARG LEU THR ARG ALA SEQRES 18 A 292 CYS HIS GLN ALA MET MET VAL ASP GLN ALA ASN GLY ILE SEQRES 19 A 292 GLU ALA VAL TRP HIS ASP GLU SER HIS LEU ASN LYS TYR SEQRES 20 A 292 LEU LEU ARG HIS LYS PRO THR LYS VAL LEU SER PRO GLU SEQRES 21 A 292 TYR LEU TRP ASP GLN GLN LEU LEU GLY TRP PRO ALA VAL SEQRES 22 A 292 LEU ARG LYS LEU ARG PHE THR ALA VAL PRO LYS ASN HIS SEQRES 23 A 292 GLN ALA VAL ARG ASN PRO HET BHG B 1 18 HET FUC B 2 10 HET HG A 401 1 HET HG A 402 1 HET HG A 403 1 HET HG A 404 1 HET MN A 406 1 HET UDP A 475 25 HETNAM BHG HEXYL BETA-D-GALACTOPYRANOSIDE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM HG MERCURY (II) ION HETNAM MN MANGANESE (II) ION HETNAM UDP URIDINE-5'-DIPHOSPHATE HETSYN BHG 2-HEXYLOXY-6-HYDROXYMETHYL-TETRAHYDRO-PYRAN-3,4,5- HETSYN 2 BHG TRIOL; HEXYL BETA-D-GALACTOSIDE; HEXYL D-GALACTOSIDE; HETSYN 3 BHG HEXYL GALACTOSIDE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 2 BHG C12 H24 O6 FORMUL 2 FUC C6 H12 O5 FORMUL 3 HG 4(HG 2+) FORMUL 7 MN MN 2+ FORMUL 8 UDP C9 H14 N2 O12 P2 FORMUL 9 HOH *388(H2 O) HELIX 1 1 ASN A 101 GLN A 112 1 12 HELIX 2 2 ILE A 123 ALA A 128 5 6 HELIX 3 3 PHE A 129 PHE A 141 1 13 HELIX 4 4 GLN A 155 VAL A 159 5 5 HELIX 5 5 GLU A 197 VAL A 204 1 8 HELIX 6 6 GLY A 221 LEU A 225 5 5 HELIX 7 7 SER A 240 PHE A 244 5 5 HELIX 8 8 VAL A 274 ASN A 294 1 21 HELIX 9 9 TRP A 300 HIS A 313 1 14 HELIX 10 10 PRO A 321 LEU A 324 5 4 HELIX 11 11 ASP A 326 GLY A 331 1 6 SHEET 1 A 8 ILE A 94 VAL A 95 0 SHEET 2 A 8 LYS A 317 LEU A 319 1 O VAL A 318 N VAL A 95 SHEET 3 A 8 LEU A 228 THR A 231 1 N GLY A 230 O LEU A 319 SHEET 4 A 8 PHE A 269 SER A 273 -1 O GLY A 271 N PHE A 229 SHEET 5 A 8 TYR A 206 VAL A 210 -1 N CYS A 209 O PHE A 270 SHEET 6 A 8 THR A 115 ALA A 122 1 N GLY A 117 O TYR A 206 SHEET 7 A 8 ARG A 146 THR A 153 1 O PHE A 152 N ALA A 122 SHEET 8 A 8 ARG A 168 GLU A 174 1 O GLN A 169 N TYR A 149 SHEET 1 B 2 MET A 214 PHE A 216 0 SHEET 2 B 2 PHE A 341 ALA A 343 -1 O THR A 342 N GLU A 215 LINK O2 BHG B 1 C1 FUC B 2 1555 1555 1.40 LINK OG1 THR A 119 HG HG A 401 1555 1555 2.96 LINK SG CYS A 209 HG HG A 401 1555 1555 2.16 LINK N VAL A 210 HG HG A 404 1555 1555 3.53 LINK O VAL A 210 HG HG A 404 1555 1555 3.54 LINK OD2 ASP A 211 MN MN A 406 1555 1555 2.33 LINK OD2 ASP A 213 MN MN A 406 1555 1555 2.38 LINK OD1 ASP A 213 MN MN A 406 1555 1555 2.62 LINK SG ACYS A 284 HG HG A 402 1555 1555 2.30 LINK SG BCYS A 284 HG HG A 402 1555 1555 3.14 LINK SD MET A 288 HG HG A 403 1555 1555 2.48 LINK HG HG A 401 O HOH A 719 1555 1555 2.24 LINK HG HG A 402 O HOH A 663 1555 1555 2.19 LINK HG HG A 403 O HOH A 713 1555 1555 3.02 LINK HG HG A 404 O HOH A 629 1555 1555 2.28 LINK HG HG A 404 O HOH A 635 1555 1555 3.35 LINK HG HG A 404 O HOH A 661 1555 1555 2.44 LINK MN MN A 406 O1A UDP A 475 1555 1555 2.19 LINK MN MN A 406 O3B UDP A 475 1555 1555 2.23 LINK MN MN A 406 O HOH A 708 1555 1555 2.17 CRYST1 52.740 149.480 79.530 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018961 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006690 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012574 0.00000