PDB Short entry for 1M1D HEADER TRANSFERASE 18-JUN-02 1M1D TITLE TETRAHYMENA GCN5 WITH BOUND BISUBSTRATE ANALOG INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TGCN5 HISTONE ACETYL TRANSFERASE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: HAT A1; COMPND 6 EC: 2.3.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H3; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: 20 MER PEPTIDE (RESIDUES 1-20), BISUBSTRATE COMPND 12 ANALOG; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TETRAHYMENA THERMOPHILA; SOURCE 3 ORGANISM_TAXID: 5911; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL-21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSETA; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 OTHER_DETAILS: INHIBITOR COMPOSED OF A HISTONE H3 FRAGMENT SOURCE 12 (RESIDUES 1-20) IS CHEMICALLY SYNTHESIZED. THE PEPTIDE'S SOURCE 13 SEQUENCE OCCURS NATURALLY IN SACCHAROMYCES CEREVISIAE SOURCE 14 (BAKER'S YEAST). KEYWDS HISTONE ACETYLTRANSFERASE, GCN5-RELATED N-ACETYLTRANSFERASE, KEYWDS 2 INHIBITOR COMPLEX, TRANSCRIPTION FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR A.N.POUX,M.CEBRAT,C.M.KIM,P.A.COLE,R.MARMORSTEIN REVDAT 3 24-FEB-09 1M1D 1 VERSN REVDAT 2 06-NOV-02 1M1D 1 JRNL REVDAT 1 30-OCT-02 1M1D 0 JRNL AUTH A.N.POUX,M.CEBRAT,C.M.KIM,P.A.COLE,R.MARMORSTEIN JRNL TITL STRUCTURE OF THE GCN5 HISTONE ACETYLTRANSFERASE JRNL TITL 2 BOUND TO A BISUBSTRATE INHIBITOR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 14065 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 12391296 JRNL DOI 10.1073/PNAS.222373899 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 16027 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1615 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2858 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.16900 REMARK 3 B22 (A**2) : 2.41700 REMARK 3 B33 (A**2) : 1.75200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1M1D COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-02. REMARK 100 THE RCSB ID CODE IS RCSB016476. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0082 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26519 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1QSN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM REMARK 280 CACODYLATE, SODIUM CHLORIDE, PH 6.6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.71000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.25000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.91500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.25000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.71000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.91500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 1 REMARK 465 ARG B 2 REMARK 465 THR B 3 REMARK 465 LYS B 4 REMARK 465 GLN B 5 REMARK 465 THR B 6 REMARK 465 ALA B 7 REMARK 465 ARG B 8 REMARK 465 LYS B 9 REMARK 465 SER B 10 REMARK 465 THR B 11 REMARK 465 LYS B 18 REMARK 465 GLN B 19 REMARK 465 LEU B 20 REMARK 465 LEU C 348 REMARK 465 ALA D 301 REMARK 465 ARG D 302 REMARK 465 THR D 303 REMARK 465 LYS D 304 REMARK 465 GLN D 305 REMARK 465 THR D 306 REMARK 465 ALA D 307 REMARK 465 ARG D 308 REMARK 465 LYS D 309 REMARK 465 SER D 310 REMARK 465 THR D 311 REMARK 465 GLY D 312 REMARK 465 GLY D 313 REMARK 465 ALA D 315 REMARK 465 PRO D 316 REMARK 465 ARG D 317 REMARK 465 LYS D 318 REMARK 465 GLN D 319 REMARK 465 LEU D 320 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO C 481 CG CD REMARK 470 GLN C 482 CG CD OE1 NE2 REMARK 470 TRP C 485 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 485 CZ3 CH2 REMARK 470 TYR C 492 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP C 493 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA B 15 N ALA B 15 CA -0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA B 15 N - CA - C ANGL. DEV. = 19.5 DEGREES REMARK 500 PRO B 16 N - CA - C ANGL. DEV. = 31.7 DEGREES REMARK 500 PRO B 16 C - N - CD ANGL. DEV. = -14.7 DEGREES REMARK 500 PRO B 16 CA - C - N ANGL. DEV. = -20.3 DEGREES REMARK 500 ARG B 17 C - N - CA ANGL. DEV. = 19.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 104 -17.23 -163.62 REMARK 500 THR A 159 144.98 -170.78 REMARK 500 ASP A 193 -70.22 -44.98 REMARK 500 PRO B 16 154.94 18.20 REMARK 500 GLN C 404 -20.93 -153.55 REMARK 500 HIS C 478 35.79 -91.55 REMARK 500 ARG C 479 49.13 -61.65 REMARK 500 MET C 480 -94.58 169.96 REMARK 500 PRO C 481 -167.46 43.75 REMARK 500 GLN C 482 173.56 -59.14 REMARK 500 LYS C 484 51.33 116.42 REMARK 500 TRP C 485 -37.73 73.51 REMARK 500 ASP C 491 87.39 -169.06 REMARK 500 TYR C 492 48.08 13.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA B 15 -16.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 INHIBITOR COMPOSED OF A HISTONE H3 FRAGMENT (RESIDUES 1-20) REMARK 600 AND A COENZYME A MOLECULE COVALENTLY BOUND THROUGH AN REMARK 600 ISOPROPIONYL LINKER TO LYS14. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QSN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TETRAHYMENA GCN5 WITH BOUND COENZYME A REMARK 900 AND HISTONE H3 PEPTIDE REMARK 900 RELATED ID: 1QSR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TETRAHYMENA GCN5 WITH BOUND ACETYL- REMARK 900 COENZYME A REMARK 900 RELATED ID: 1QST RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TETRAHYMENA GCN5 REMARK 900 RELATED ID: 1YGH RELATED DB: PDB REMARK 900 HAT DOMAIN OF GCN5 FROM SACCHAROMYCES CEREVISIAEYGCN5 REMARK 900 RELATED ID: 1CMO RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN MOTIF DNA-RECOGNITION AND HETERODIMERIZATION REMARK 900 FOR THE PEBP2/CBF RUNT-DOMAIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUE 90 (CHAIN A) AND RESIDUE 390 (CHAIN C) ARE BOTH REMARK 999 PHE. AUTHOR INDICATES THAT PHE IS PRESENT IN MANY OF REMARK 999 THE GCN5 HOMOLOGUES AT THAT POSITION. ACCORDING TO THE REMARK 999 AUTHOR, RESIDUE 210 (CHAIN A) AND RESIDUE 510 (CHAIN C) REMARK 999 ARE BOTH ARG AND NOT ASN. DBREF 1M1D A 48 210 GB 1245146 AAB01099 1 163 DBREF 1M1D C 348 510 GB 1245146 AAB01099 1 163 DBREF 1M1D B 1 20 UNP P02303 H3_YEAST 1 20 DBREF 1M1D D 301 320 UNP P02303 H3_YEAST 1 20 SEQADV 1M1D PHE A 90 GB 1245146 LEU 43 SEE REMARK 999 SEQADV 1M1D ARG A 210 GB 1245146 ASN 163 SEE REMARK 999 SEQADV 1M1D PHE C 390 GB 1245146 LEU 43 SEE REMARK 999 SEQADV 1M1D ARG C 510 GB 1245146 ASN 163 SEE REMARK 999 SEQADV 1M1D LYX B 14 UNP P02303 LYS 14 MODIFIED RESIDUE SEQADV 1M1D LYX D 314 UNP P02303 LYS 14 MODIFIED RESIDUE SEQRES 1 A 163 LEU LEU ASP PHE ASP ILE LEU THR ASN ASP GLY THR HIS SEQRES 2 A 163 ARG ASN MET LYS LEU LEU ILE ASP LEU LYS ASN ILE PHE SEQRES 3 A 163 SER ARG GLN LEU PRO LYS MET PRO LYS GLU TYR ILE VAL SEQRES 4 A 163 LYS LEU VAL PHE ASP ARG HIS HIS GLU SER MET VAL ILE SEQRES 5 A 163 LEU LYS ASN LYS GLN LYS VAL ILE GLY GLY ILE CYS PHE SEQRES 6 A 163 ARG GLN TYR LYS PRO GLN ARG PHE ALA GLU VAL ALA PHE SEQRES 7 A 163 LEU ALA VAL THR ALA ASN GLU GLN VAL ARG GLY TYR GLY SEQRES 8 A 163 THR ARG LEU MET ASN LYS PHE LYS ASP HIS MET GLN LYS SEQRES 9 A 163 GLN ASN ILE GLU TYR LEU LEU THR TYR ALA ASP ASN PHE SEQRES 10 A 163 ALA ILE GLY TYR PHE LYS LYS GLN GLY PHE THR LYS GLU SEQRES 11 A 163 HIS ARG MET PRO GLN GLU LYS TRP LYS GLY TYR ILE LYS SEQRES 12 A 163 ASP TYR ASP GLY GLY THR LEU MET GLU CYS TYR ILE HIS SEQRES 13 A 163 PRO TYR VAL ASP TYR GLY ARG SEQRES 1 B 20 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 B 20 LYX ALA PRO ARG LYS GLN LEU SEQRES 1 C 163 LEU LEU ASP PHE ASP ILE LEU THR ASN ASP GLY THR HIS SEQRES 2 C 163 ARG ASN MET LYS LEU LEU ILE ASP LEU LYS ASN ILE PHE SEQRES 3 C 163 SER ARG GLN LEU PRO LYS MET PRO LYS GLU TYR ILE VAL SEQRES 4 C 163 LYS LEU VAL PHE ASP ARG HIS HIS GLU SER MET VAL ILE SEQRES 5 C 163 LEU LYS ASN LYS GLN LYS VAL ILE GLY GLY ILE CYS PHE SEQRES 6 C 163 ARG GLN TYR LYS PRO GLN ARG PHE ALA GLU VAL ALA PHE SEQRES 7 C 163 LEU ALA VAL THR ALA ASN GLU GLN VAL ARG GLY TYR GLY SEQRES 8 C 163 THR ARG LEU MET ASN LYS PHE LYS ASP HIS MET GLN LYS SEQRES 9 C 163 GLN ASN ILE GLU TYR LEU LEU THR TYR ALA ASP ASN PHE SEQRES 10 C 163 ALA ILE GLY TYR PHE LYS LYS GLN GLY PHE THR LYS GLU SEQRES 11 C 163 HIS ARG MET PRO GLN GLU LYS TRP LYS GLY TYR ILE LYS SEQRES 12 C 163 ASP TYR ASP GLY GLY THR LEU MET GLU CYS TYR ILE HIS SEQRES 13 C 163 PRO TYR VAL ASP TYR GLY ARG SEQRES 1 D 20 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 D 20 LYX ALA PRO ARG LYS GLN LEU MODRES 1M1D LYX B 14 LYS N''-(2-COENZYME A)-PROPANOYL-LYSINE MODRES 1M1D LYX D 314 LYS N''-(2-COENZYME A)-PROPANOYL-LYSINE HET LYX B 14 61 HET LYX D 314 61 HETNAM LYX N''-(2-COENZYME A)-PROPANOYL-LYSINE FORMUL 2 LYX 2(C30 H52 N9 O19 P3 S) FORMUL 5 HOH *107(H2 O) HELIX 1 1 THR A 59 LEU A 77 1 19 HELIX 2 2 PRO A 81 PHE A 90 1 10 HELIX 3 3 ALA A 130 GLN A 133 5 4 HELIX 4 4 GLY A 136 GLN A 152 1 17 HELIX 5 5 ALA A 165 LYS A 171 1 7 HELIX 6 6 PRO A 181 TRP A 185 5 5 HELIX 7 7 THR C 359 LEU C 377 1 19 HELIX 8 8 PRO C 381 PHE C 390 1 10 HELIX 9 9 ALA C 430 GLN C 433 5 4 HELIX 10 10 GLY C 436 GLN C 452 1 17 HELIX 11 11 ALA C 465 GLN C 472 1 8 SHEET 1 A 6 LEU A 49 THR A 55 0 SHEET 2 A 6 HIS A 94 LYS A 101 -1 O SER A 96 N LEU A 54 SHEET 3 A 6 LYS A 105 TYR A 115 -1 O GLY A 108 N ILE A 99 SHEET 4 A 6 PHE A 120 VAL A 128 -1 O PHE A 120 N TYR A 115 SHEET 5 A 6 TYR A 156 ASP A 162 1 O LEU A 158 N ALA A 121 SHEET 6 A 6 GLY A 195 TYR A 201 -1 O MET A 198 N THR A 159 SHEET 1 B 6 ASP C 350 THR C 355 0 SHEET 2 B 6 HIS C 394 LYS C 401 -1 O LEU C 400 N ASP C 350 SHEET 3 B 6 LYS C 405 TYR C 415 -1 O GLY C 408 N ILE C 399 SHEET 4 B 6 PHE C 420 VAL C 428 -1 O GLU C 422 N ARG C 413 SHEET 5 B 6 TYR C 456 ALA C 461 1 O LEU C 458 N ALA C 421 SHEET 6 B 6 THR C 496 TYR C 501 -1 O MET C 498 N THR C 459 LINK C GLY B 13 N LYX B 14 1555 1555 1.30 LINK C LYX B 14 N ALA B 15 1555 1555 1.29 CRYST1 67.420 67.830 74.500 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014832 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014743 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013423 0.00000