PDB Short entry for 1M33 HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 26-JUN-02 1M33 TITLE CRYSTAL STRUCTURE OF BIOH AT 1.7 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOH PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: BIOH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS ALPHA-BETTA-ALPHA SANDWICH, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR R.SANISHVILI,A.SAVCHENKO,T.SKARINA,A.EDWARDS,A.JOACHIMIAK,A.YAKUNIN, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 6 24-JUL-19 1M33 1 REMARK LINK REVDAT 5 11-OCT-17 1M33 1 REMARK REVDAT 4 13-JUL-11 1M33 1 VERSN REVDAT 3 24-FEB-09 1M33 1 VERSN REVDAT 2 28-DEC-04 1M33 1 AUTHOR JRNL KEYWDS REMARK REVDAT 2 2 1 CONECT MASTER HEADER REVDAT 1 21-JAN-03 1M33 0 JRNL AUTH R.SANISHVILI,A.F.YAKUNIN,R.A.LASKOWSKI,T.SKARINA, JRNL AUTH 2 E.EVDOKIMOVA,A.DOHERTY-KIRBY,G.A.LAJOIE,J.M.THORNTON, JRNL AUTH 3 C.H.ARROWSMITH,A.SAVCHENKO,A.JOACHIMIAK,A.M.EDWARDS JRNL TITL INTEGRATING STRUCTURE, BIOINFORMATICS, AND ENZYMOLOGY TO JRNL TITL 2 DISCOVER FUNCTION: BIOH, A NEW CARBOXYLESTERASE FROM JRNL TITL 3 ESCHERICHIA COLI. JRNL REF J.BIOL.CHEM. V. 278 26039 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12732651 JRNL DOI 10.1074/JBC.M303867200 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.05 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 27141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1422 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3631 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 175 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1996 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : -0.15000 REMARK 3 B33 (A**2) : 0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.099 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.933 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2327 ; 0.022 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2174 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3158 ; 1.941 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5079 ; 2.329 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 276 ; 6.629 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 455 ;19.565 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 352 ; 0.143 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2551 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 468 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 539 ; 0.286 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2506 ; 0.268 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1273 ; 0.098 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 144 ; 0.196 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.300 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 59 ; 0.293 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.142 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1373 ; 1.107 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2248 ; 1.791 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 954 ; 2.650 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 910 ; 3.961 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 109 REMARK 3 RESIDUE RANGE : A 188 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9707 10.8230 14.3217 REMARK 3 T TENSOR REMARK 3 T11: 0.0210 T22: 0.0190 REMARK 3 T33: 0.0393 T12: 0.0147 REMARK 3 T13: 0.0092 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.5960 L22: 2.1184 REMARK 3 L33: 1.7319 L12: -0.2217 REMARK 3 L13: 0.2992 L23: -0.0851 REMARK 3 S TENSOR REMARK 3 S11: 0.0179 S12: 0.0109 S13: 0.0518 REMARK 3 S21: 0.0451 S22: -0.0312 S23: 0.0583 REMARK 3 S31: -0.0046 S32: -0.0260 S33: 0.0133 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): 34.4722 2.5709 11.6658 REMARK 3 T TENSOR REMARK 3 T11: 0.1338 T22: 0.1620 REMARK 3 T33: 0.1404 T12: 0.0224 REMARK 3 T13: -0.0063 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.9386 L22: 1.3232 REMARK 3 L33: 1.1053 L12: -0.4449 REMARK 3 L13: -0.1438 L23: -0.4501 REMARK 3 S TENSOR REMARK 3 S11: 0.0483 S12: 0.2257 S13: -0.0386 REMARK 3 S21: -0.1064 S22: -0.0571 S23: -0.3146 REMARK 3 S31: 0.0521 S32: 0.3817 S33: 0.0088 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 303 A 540 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4028 9.3391 13.2230 REMARK 3 T TENSOR REMARK 3 T11: 0.1710 T22: 0.1592 REMARK 3 T33: 0.1408 T12: 0.0069 REMARK 3 T13: -0.0114 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.6269 L22: 1.8027 REMARK 3 L33: 1.4051 L12: -0.3573 REMARK 3 L13: 0.0707 L23: -0.1525 REMARK 3 S TENSOR REMARK 3 S11: 0.0233 S12: 0.0193 S13: 0.0915 REMARK 3 S21: 0.0099 S22: -0.0147 S23: -0.0578 REMARK 3 S31: -0.0585 S32: 0.0426 S33: -0.0086 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1M33 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-02. REMARK 100 THE DEPOSITION ID IS D_1000016536. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979464, 0.953732, 1.03321 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSING SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : SAGITALLY FOCUSING REMARK 200 MONOCHROMATOR, VERTICALLY REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, D*TREK, DTDISPLAY REMARK 200 DATA SCALING SOFTWARE : D*TREK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33538 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.59500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.3M TRI NA CITRATE, 0.1M TRIS, 15% REMARK 280 ETHYLENE GLYCOL, PH 8.8, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.62800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.94200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 12.31400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE MONOMER IN THE ASYMMETRIC UNIT IS A WHOLE BIOLOGICAL REMARK 300 UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ASN A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 ASP A 123 OD1 OD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 54 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 196 CB SER A 196 OG -0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 31 CA - CB - SG ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 98 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 135 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 VAL A 173 CG1 - CB - CG2 ANGL. DEV. = 9.9 DEGREES REMARK 500 VAL A 195 CG1 - CB - CG2 ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG A 201 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 201 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 24 -160.66 -103.67 REMARK 500 SER A 82 -118.33 62.09 REMARK 500 CYS A 110 89.91 -157.13 REMARK 500 ASP A 115 -96.07 6.14 REMARK 500 ALA A 234 -131.95 -102.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3OH A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC064 RELATED DB: TARGETDB DBREF 1M33 A 1 256 UNP P13001 BIOH_ECOLI 1 256 SEQADV 1M33 MSE A 1 UNP P13001 MET 1 MODIFIED RESIDUE SEQADV 1M33 MSE A 64 UNP P13001 MET 64 MODIFIED RESIDUE SEQADV 1M33 ARG A 100 UNP P13001 GLN 100 CONFLICT SEQADV 1M33 GLN A 136 UNP P13001 PHE 136 CONFLICT SEQADV 1M33 TRP A 81 UNP P13001 PHE 143 CONFLICT SEQADV 1M33 MSE A 149 UNP P13001 MET 149 MODIFIED RESIDUE SEQADV 1M33 ARG A 100 UNP P13001 LYS 162 CONFLICT SEQADV 1M33 MSE A 170 UNP P13001 MET 170 MODIFIED RESIDUE SEQADV 1M33 MSE A 197 UNP P13001 MET 197 MODIFIED RESIDUE SEQADV 1M33 MSE A 217 UNP P13001 MET 217 MODIFIED RESIDUE SEQADV 1M33 GLY A 257 UNP P13001 INSERTION SEQADV 1M33 SER A 258 UNP P13001 INSERTION SEQRES 1 A 258 MSE ASN ASN ILE TRP TRP GLN THR LYS GLY GLN GLY ASN SEQRES 2 A 258 VAL HIS LEU VAL LEU LEU HIS GLY TRP GLY LEU ASN ALA SEQRES 3 A 258 GLU VAL TRP ARG CYS ILE ASP GLU GLU LEU SER SER HIS SEQRES 4 A 258 PHE THR LEU HIS LEU VAL ASP LEU PRO GLY PHE GLY ARG SEQRES 5 A 258 SER ARG GLY PHE GLY ALA LEU SER LEU ALA ASP MSE ALA SEQRES 6 A 258 GLU ALA VAL LEU GLN GLN ALA PRO ASP LYS ALA ILE TRP SEQRES 7 A 258 LEU GLY TRP SER LEU GLY GLY LEU VAL ALA SER GLN ILE SEQRES 8 A 258 ALA LEU THR HIS PRO GLU ARG VAL ARG ALA LEU VAL THR SEQRES 9 A 258 VAL ALA SER SER PRO CYS PHE SER ALA ARG ASP GLU TRP SEQRES 10 A 258 PRO GLY ILE LYS PRO ASP VAL LEU ALA GLY PHE GLN GLN SEQRES 11 A 258 GLN LEU SER ASP ASP GLN GLN ARG THR VAL GLU ARG PHE SEQRES 12 A 258 LEU ALA LEU GLN THR MSE GLY THR GLU THR ALA ARG GLN SEQRES 13 A 258 ASP ALA ARG ALA LEU LYS LYS THR VAL LEU ALA LEU PRO SEQRES 14 A 258 MSE PRO GLU VAL ASP VAL LEU ASN GLY GLY LEU GLU ILE SEQRES 15 A 258 LEU LYS THR VAL ASP LEU ARG GLN PRO LEU GLN ASN VAL SEQRES 16 A 258 SER MSE PRO PHE LEU ARG LEU TYR GLY TYR LEU ASP GLY SEQRES 17 A 258 LEU VAL PRO ARG LYS VAL VAL PRO MSE LEU ASP LYS LEU SEQRES 18 A 258 TRP PRO HIS SER GLU SER TYR ILE PHE ALA LYS ALA ALA SEQRES 19 A 258 HIS ALA PRO PHE ILE SER HIS PRO ALA GLU PHE CYS HIS SEQRES 20 A 258 LEU LEU VAL ALA LEU LYS GLN ARG VAL GLY SER MODRES 1M33 MSE A 64 MET SELENOMETHIONINE MODRES 1M33 MSE A 149 MET SELENOMETHIONINE MODRES 1M33 MSE A 170 MET SELENOMETHIONINE MODRES 1M33 MSE A 197 MET SELENOMETHIONINE MODRES 1M33 MSE A 217 MET SELENOMETHIONINE HET MSE A 64 8 HET MSE A 149 12 HET MSE A 170 12 HET MSE A 197 11 HET MSE A 217 12 HET 3OH A 300 12 HET EDO A 301 4 HET EDO A 302 8 HETNAM MSE SELENOMETHIONINE HETNAM 3OH 3-HYDROXY-PROPANOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 3OH C3 H6 O3 FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *238(H2 O) HELIX 1 1 ASN A 25 CYS A 31 5 7 HELIX 2 2 ILE A 32 SER A 38 1 7 HELIX 3 3 SER A 60 GLN A 70 1 11 HELIX 4 4 SER A 82 HIS A 95 1 14 HELIX 5 5 LYS A 121 ARG A 142 1 22 HELIX 6 6 LEU A 144 THR A 148 5 5 HELIX 7 7 THR A 153 LEU A 161 1 9 HELIX 8 8 LYS A 163 VAL A 165 5 3 HELIX 9 9 GLU A 172 VAL A 186 1 15 HELIX 10 10 GLN A 190 VAL A 195 5 6 HELIX 11 11 LYS A 213 TRP A 222 1 10 HELIX 12 12 ALA A 236 HIS A 241 1 6 HELIX 13 13 HIS A 241 GLN A 254 1 14 SHEET 1 A 7 TRP A 6 LYS A 9 0 SHEET 2 A 7 THR A 41 VAL A 45 -1 O LEU A 44 N GLN A 7 SHEET 3 A 7 HIS A 15 LEU A 19 1 N LEU A 18 O HIS A 43 SHEET 4 A 7 ALA A 76 TRP A 81 1 O TRP A 81 N LEU A 19 SHEET 5 A 7 VAL A 99 VAL A 105 1 O VAL A 103 N TRP A 78 SHEET 6 A 7 PHE A 199 GLY A 204 1 O LEU A 202 N THR A 104 SHEET 7 A 7 GLU A 226 PHE A 230 1 O PHE A 230 N TYR A 203 LINK OG SER A 82 C3 A3OH A 300 1555 1555 1.78 LINK OG SER A 82 C3 B3OH A 300 1555 1555 1.88 LINK C ASP A 63 N MSE A 64 1555 1555 1.33 LINK C MSE A 64 N ALA A 65 1555 1555 1.31 LINK C THR A 148 N MSE A 149 1555 1555 1.34 LINK C MSE A 149 N GLY A 150 1555 1555 1.31 LINK C PRO A 169 N MSE A 170 1555 1555 1.33 LINK C MSE A 170 N PRO A 171 1555 1555 1.34 LINK C SER A 196 N MSE A 197 1555 1555 1.33 LINK C MSE A 197 N PRO A 198 1555 1555 1.34 LINK C PRO A 216 N AMSE A 217 1555 1555 1.33 LINK C MSE A 217 N LEU A 218 1555 1555 1.33 SITE 1 AC1 11 GLY A 21 TRP A 22 LEU A 24 TRP A 81 SITE 2 AC1 11 SER A 82 LEU A 83 PHE A 111 PHE A 143 SITE 3 AC1 11 GLN A 147 LEU A 183 HIS A 235 SITE 1 AC2 3 GLU A 152 LEU A 206 LYS A 232 SITE 1 AC3 8 ILE A 229 HIS A 241 PRO A 242 ALA A 243 SITE 2 AC3 8 GLU A 244 HOH A 360 HOH A 424 HOH A 510 CRYST1 75.210 75.210 49.256 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013296 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013296 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020302 0.00000