PDB Short entry for 1M3C
HEADER    PROTEIN BINDING                         27-JUN-02   1M3C              
TITLE     SOLUTION STRUCTURE OF A CIRCULAR FORM OF THE N-TERMINAL SH3 DOMAIN    
TITLE    2 (E132C, E133G, R191G MUTANT) FROM ONCOGENE PROTEIN C-CRK             
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PROTO-ONCOGENE C-CRK;                                      
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: N-TERMINAL SH3 DOMAIN (RESIDUES 132-191);                  
COMPND   5 SYNONYM: P38, ADAPTER MOLECULE CRK;                                  
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;                                   
SOURCE   3 ORGANISM_COMMON: HOUSE MOUSE;                                        
SOURCE   4 ORGANISM_TAXID: 10090;                                               
SOURCE   5 GENE: CRK;                                                           
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1                                 
KEYWDS    SH3, SH3 DOMAIN, CIRCULAR PROTEIN, CYCLIZED PROTEIN, ADAPTOR PROTEIN, 
KEYWDS   2 PROTEIN BINDING                                                      
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    F.H.SCHUMANN,R.VARADAN,P.P.TAYAKUNIYIL,J.B.HALL,J.A.CAMARERO,         
AUTHOR   2 D.FUSHMAN                                                            
REVDAT   3   27-OCT-21 1M3C    1       REMARK SEQADV LINK                       
REVDAT   2   24-FEB-09 1M3C    1       VERSN                                    
REVDAT   1   05-AUG-03 1M3C    0                                                
JRNL        AUTH   F.H.SCHUMANN,R.VARADAN,P.P.TAYAKUNIYIL,J.B.HALL,             
JRNL        AUTH 2 J.A.CAMARERO,D.FUSHMAN                                       
JRNL        TITL   CHANGING PROTEIN BACKBONE TOPOLOGY: STRUCTURAL AND DYNAMIC   
JRNL        TITL 2 CONSEQUENCES OF THE BACKBONE CYCLIZATION IN SH3 DOMAIN       
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   1                                                                      
REMARK   1 REFERENCE 1                                                          
REMARK   1  AUTH   J.A.CAMARERO,D.FUSHMAN,S.SATO,I.GIRIAT,D.COWBURN,            
REMARK   1  AUTH 2 D.P.RALEIGH,T.W.MUIR                                         
REMARK   1  TITL   RESCUING A DESTABILIZED PROTEIN FOLD THROUGH BACKBONE        
REMARK   1  TITL 2 CYCLIZATION                                                  
REMARK   1  REF    J.MOL.BIOL.                   V. 308  1045 2001              
REMARK   1  REFN                   ISSN 0022-2836                               
REMARK   1  DOI    10.1006/JMBI.2001.4631                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : XWINNMR 2.6,3.0, DYANA                               
REMARK   3   AUTHORS     : BRUKER (XWINNMR), GUENTERT, WUETHRICH (DYANA)        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 1010          
REMARK   3  RESTRAINTS, 913 ARE NOE-DERIVED DISTANCE CONTRAINTS, 25 DIHEDRAL    
REMARK   3  ANGLE CONSTRAINTS, AND 72 DISTANCE RESTRAINTS FROM HYDROGEN         
REMARK   3  BONDS. STRUCTURES WERE CALCULATED USING PROGRAM DYANA. NO           
REMARK   3  FURTHER REFINEMENT WAS PERFORMED.                                   
REMARK   4                                                                      
REMARK   4 1M3C COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-02.                  
REMARK 100 THE DEPOSITION ID IS D_1000016545.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 307                                
REMARK 210  PH                             : 7.2                                
REMARK 210  IONIC STRENGTH                 : 100 MM NACL                        
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1MM SH3 NA, 20MM SODIUM            
REMARK 210                                   PHOSPHATE, 20 MM DTT-D10, 100 MM   
REMARK 210                                   NACL, 0.1% (W/V) NAN3; 1MM SH3 U-  
REMARK 210                                   15N, 20MM SODIUM PHOSPHATE, 20     
REMARK 210                                   MM DTT-D10, 100 MM NACL, 0.1% (W/  
REMARK 210                                   V) NAN3                            
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D TOCSY; 2D NOESY; DQF-COSY; 2D   
REMARK 210                                   HSQC                               
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ                            
REMARK 210  SPECTROMETER MODEL             : DRX                                
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : XEASY 1.3.1.3., DYANA 1.5          
REMARK 210   METHOD USED                   : SIMULATED ANNEALING COMBINED       
REMARK 210                                   WITH TORSION ANGLE DYNAMICS        
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 200                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   TARGET FUNCTION                    
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D              
REMARK 210  HOMONUCLEAR TECHNIQUES COMBINED WITH 2D 1H-15N HSQC DATA.           
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    ALA A   139     H    GLY A   156              1.29            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 GLU A 135       69.02     39.05                                   
REMARK 500  1 PHE A 143       59.82    179.00                                   
REMARK 500  1 ASN A 146       66.28   -167.53                                   
REMARK 500  1 LYS A 154     -167.22   -126.56                                   
REMARK 500  1 ARG A 162      -69.27    -97.70                                   
REMARK 500  1 ASP A 174     -177.38    -68.63                                   
REMARK 500  1 GLU A 176       22.68   -175.35                                   
REMARK 500  2 ALA A 134     -159.64     68.40                                   
REMARK 500  2 PHE A 143       34.73   -179.36                                   
REMARK 500  2 ASN A 146      -50.19   -177.74                                   
REMARK 500  2 ASP A 147      154.82    -42.10                                   
REMARK 500  2 GLU A 148       46.21    -90.94                                   
REMARK 500  2 GLU A 149      -46.52   -144.20                                   
REMARK 500  2 LYS A 154      -90.77   -121.27                                   
REMARK 500  2 LYS A 164       84.98   -164.74                                   
REMARK 500  2 ASP A 174     -164.22    -72.44                                   
REMARK 500  2 GLU A 176       28.45   -177.22                                   
REMARK 500  3 ALA A 134      109.61     56.54                                   
REMARK 500  3 PHE A 143      -42.35   -149.03                                   
REMARK 500  3 ASN A 144      169.39     58.61                                   
REMARK 500  3 ASN A 146       57.33   -157.42                                   
REMARK 500  3 GLU A 148       58.01   -101.67                                   
REMARK 500  3 GLU A 149      -43.74   -179.51                                   
REMARK 500  3 LYS A 154     -164.91   -127.13                                   
REMARK 500  3 LYS A 164       64.14   -165.23                                   
REMARK 500  3 GLN A 168      -57.82   -159.44                                   
REMARK 500  3 ASP A 174     -168.50    -73.99                                   
REMARK 500  3 GLU A 176       16.85   -175.11                                   
REMARK 500  4 ALA A 134       77.96   -168.59                                   
REMARK 500  4 GLU A 135       75.54     46.66                                   
REMARK 500  4 PHE A 143       29.22   -170.09                                   
REMARK 500  4 ASN A 144      169.73    -47.25                                   
REMARK 500  4 ASN A 146      -53.68   -176.87                                   
REMARK 500  4 ASP A 147     -171.77     46.04                                   
REMARK 500  4 LYS A 154      -82.26   -121.60                                   
REMARK 500  4 LYS A 155      108.63   -175.25                                   
REMARK 500  4 LYS A 164       63.08   -157.81                                   
REMARK 500  4 GLU A 167       45.77   -106.99                                   
REMARK 500  4 GLN A 168      -59.53   -167.03                                   
REMARK 500  4 ASP A 174     -163.92    -74.60                                   
REMARK 500  4 SER A 175       47.04    -89.32                                   
REMARK 500  4 GLU A 176       24.51   -169.68                                   
REMARK 500  5 GLU A 135       74.88     39.14                                   
REMARK 500  5 PHE A 143       36.09   -179.14                                   
REMARK 500  5 ASN A 144      107.36    -40.99                                   
REMARK 500  5 ASN A 146      -51.56   -174.39                                   
REMARK 500  5 ASP A 147      154.40    -40.54                                   
REMARK 500  5 LYS A 154     -164.42   -128.56                                   
REMARK 500  5 ASP A 174     -174.73    -66.43                                   
REMARK 500  5 GLU A 176       11.25   -172.21                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     206 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1M30   RELATED DB: PDB                                   
REMARK 900 SOLUTION STRUCTURE OF N-TERMINAL SH3 DOMAIN FROM ONCOGENE PROTEIN C- 
REMARK 900 CRK                                                                  
REMARK 900 RELATED ID: 1M3A   RELATED DB: PDB                                   
REMARK 900 SOLUTION STRUCTURE OF A CIRCULAR FORM OF THE TRUNCATED N-TERMINAL    
REMARK 900 SH3 DOMAIN FROM ONCOGENE PROTEIN C-CRK.                              
REMARK 900 RELATED ID: 1M3B   RELATED DB: PDB                                   
REMARK 900 SOLUTION STRUCTURE OF A CIRCULAR FORM OF THE N-TERMINAL SH3 DOMAIN   
REMARK 900 (A134C,E135G MUTANT) FROM ONCOGENE PROTEIN C-CRK.                    
DBREF  1M3C A  132   191  UNP    Q64010   CRK_MOUSE      132    191             
SEQADV 1M3C CYS A  132  UNP  Q64010    GLU   132 ENGINEERED MUTATION            
SEQADV 1M3C GLY A  133  UNP  Q64010    GLU   133 ENGINEERED MUTATION            
SEQADV 1M3C GLY A  191  UNP  Q64010    ARG   191 ENGINEERED MUTATION            
SEQRES   1 A   60  CYS GLY ALA GLU TYR VAL ARG ALA LEU PHE ASP PHE ASN          
SEQRES   2 A   60  GLY ASN ASP GLU GLU ASP LEU PRO PHE LYS LYS GLY ASP          
SEQRES   3 A   60  ILE LEU ARG ILE ARG ASP LYS PRO GLU GLU GLN TRP TRP          
SEQRES   4 A   60  ASN ALA GLU ASP SER GLU GLY LYS ARG GLY MET ILE PRO          
SEQRES   5 A   60  VAL PRO TYR VAL GLU LYS TYR GLY                              
SHEET    1   A 5 ARG A 179  PRO A 183  0                                        
SHEET    2   A 5 TRP A 169  GLU A 173 -1  N  TRP A 170   O  ILE A 182           
SHEET    3   A 5 ASP A 157  ASP A 163 -1  N  ARG A 160   O  GLU A 173           
SHEET    4   A 5 TYR A 136  ALA A 139 -1  N  VAL A 137   O  LEU A 159           
SHEET    5   A 5 VAL A 187  LYS A 189 -1  O  GLU A 188   N  ARG A 138           
LINK         N   CYS A 132                 C   GLY A 191     1555   1555  1.49  
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000