PDB Short entry for 1M4U HEADER HORMONE/GROWTH FACTOR 03-JUL-02 1M4U TITLE CRYSTAL STRUCTURE OF BONE MORPHOGENETIC PROTEIN-7 (BMP-7) IN COMPLEX TITLE 2 WITH THE SECRETED ANTAGONIST NOGGIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BONE MORPHOGENETIC PROTEIN-7; COMPND 3 CHAIN: L; COMPND 4 SYNONYM: BMP-7, OSTEOGENIC PROTEIN 1, OP-1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NOGGIN; COMPND 8 CHAIN: A; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BMP7; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 EXPRESSION_SYSTEM_CELL: OVARY CELLS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 OTHER_DETAILS: DHFR-; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: NOG; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: W3110 LACIQ; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PRG301; SOURCE 21 OTHER_DETAILS: HIGH COPY NUMBER DERIVATIVE OF PBR322 WITH A LACUV5 SOURCE 22 PROMOTER KEYWDS NOGGIN, BMP ANTAGONIST, BMP-7, BONE MORPHOGENETIC PROTEIN, CYSTINE KEYWDS 2 KNOT, HORMONE-GROWTH FACTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.GROPPE,J.GREENWALD,E.WIATER,J.RODRIGUEZ-LEON,A.N.ECONOMIDES, AUTHOR 2 W.KWIATKOWSKI,M.AFFOLTER,W.W.VALE,J.C.IZPISUA-BELMONTE,S.CHOE REVDAT 5 21-DEC-22 1M4U 1 SEQADV HETSYN REVDAT 4 29-JUL-20 1M4U 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-JUL-11 1M4U 1 VERSN REVDAT 2 24-FEB-09 1M4U 1 VERSN REVDAT 1 18-DEC-02 1M4U 0 JRNL AUTH J.GROPPE,J.GREENWALD,E.WIATER,J.RODRIGUEZ-LEON, JRNL AUTH 2 A.N.ECONOMIDES,W.KWIATKOWSKI,M.AFFOLTER,W.W.VALE, JRNL AUTH 3 J.C.IZPISUA-BELMONTE,S.CHOE JRNL TITL STRUCTURAL BASIS OF BMP SIGNALLING INHIBITION BY THE CYSTINE JRNL TITL 2 KNOT PROTEIN NOGGIN JRNL REF NATURE V. 420 636 2002 JRNL REFN ISSN 0028-0836 JRNL PMID 12478285 JRNL DOI 10.1038/NATURE01245 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.L.GRIFFITH,P.C.KECK,T.K.SAMPATH,D.C.RUEGER,W.D.CARLSON REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF RECOMBINANT HUMAN OSTEOGENIC REMARK 1 TITL 2 PROTEIN 1: STRUCTURAL PARADIGM FOR THE TRANSFORMING GROWTH REMARK 1 TITL 3 FACTOR BETA SUPERFAMILY REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 93 878 1996 REMARK 1 REFN ISSN 0027-8424 REMARK 1 DOI 10.1073/PNAS.93.2.878 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 27000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1441 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2026 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2485 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.96000 REMARK 3 B22 (A**2) : 0.96000 REMARK 3 B33 (A**2) : -1.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.235 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.210 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.223 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.409 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2590 ; 0.035 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2288 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3515 ; 3.034 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5346 ; 1.345 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 308 ; 6.173 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 476 ;24.632 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 369 ; 0.201 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2820 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 520 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 637 ; 0.280 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2444 ; 0.282 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 4 ; 0.343 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 174 ; 0.237 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 3 ; 0.226 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 72 ; 0.336 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 187 ; 0.347 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.310 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): 1 ; 0.062 ; 0.500 REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1557 ; 1.780 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2515 ; 3.227 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1033 ; 4.116 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1000 ; 6.602 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1M4U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-02. REMARK 100 THE DEPOSITION ID IS D_1000016599. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.04888, 0.91987, 0.91957, REMARK 200 0.88557 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : TRUNCATE, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28463 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6 M DISODIUM, 1.0 M MONOPOTASSIUM REMARK 280 PHOSPHATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.16350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.91700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.91700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.58175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.91700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.91700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 112.74525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.91700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.91700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.58175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.91700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.91700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 112.74525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 75.16350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED REMARK 300 BY THE TWO FOLD AXIS: -Y,-X,-Z+.5 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 12100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 75.16350 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER L 1 REMARK 465 THR L 2 REMARK 465 GLY L 3 REMARK 465 SER L 4 REMARK 465 LYS L 5 REMARK 465 GLN L 6 REMARK 465 ARG L 7 REMARK 465 SER L 8 REMARK 465 GLN L 9 REMARK 465 ASN L 10 REMARK 465 ARG L 11 REMARK 465 SER L 12 REMARK 465 LYS L 13 REMARK 465 THR L 14 REMARK 465 PRO L 15 REMARK 465 LYS L 16 REMARK 465 ASN L 17 REMARK 465 GLN L 18 REMARK 465 GLU L 19 REMARK 465 ALA L 20 REMARK 465 LEU L 21 REMARK 465 ARG L 22 REMARK 465 MET L 23 REMARK 465 ALA L 24 REMARK 465 ASN L 25 REMARK 465 VAL L 26 REMARK 465 ALA L 27 REMARK 465 GLY A 89 REMARK 465 GLY A 90 REMARK 465 GLY A 91 REMARK 465 GLY A 92 REMARK 465 GLY A 93 REMARK 465 ALA A 94 REMARK 465 ALA A 95 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 189 O HOH L 191 1.97 REMARK 500 OE2 GLU A 48 NH2 ARG A 204 2.16 REMARK 500 O HOH L 191 O HOH L 198 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O SER L 77 O PRO A 88 6455 1.49 REMARK 500 OE1 GLN A 135 NH2 ARG A 210 4444 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR L 65 CG TYR L 65 CD2 -0.096 REMARK 500 TYR L 65 CE1 TYR L 65 CZ -0.084 REMARK 500 PHE L 93 CD1 PHE L 93 CE1 -0.127 REMARK 500 LYS L 101 CB LYS L 101 CG -0.185 REMARK 500 TYR A 74 CD1 TYR A 74 CE1 -0.160 REMARK 500 TYR A 74 CE2 TYR A 74 CD2 -0.119 REMARK 500 GLU A 119 CD GLU A 119 OE2 0.069 REMARK 500 TRP A 148 CB TRP A 148 CG 0.135 REMARK 500 VAL A 157 CB VAL A 157 CG2 -0.132 REMARK 500 TRP A 161 CB TRP A 161 CG -0.138 REMARK 500 VAL A 173 CB VAL A 173 CG1 -0.129 REMARK 500 VAL A 191 CB VAL A 191 CG2 -0.216 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE L 73 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASP L 119 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG L 134 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 HIS L 139 CA - C - O ANGL. DEV. = -14.4 DEGREES REMARK 500 TYR A 30 CB - CG - CD2 ANGL. DEV. = 3.7 DEGREES REMARK 500 TYR A 30 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 LEU A 43 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 ASP A 45 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 51 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 55 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TYR A 74 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 PRO A 83 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 ASP A 86 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 ASP A 86 CB - CG - OD1 ANGL. DEV. = -16.1 DEGREES REMARK 500 ASP A 86 CB - CG - OD2 ANGL. DEV. = 14.1 DEGREES REMARK 500 PRO A 88 C - N - CA ANGL. DEV. = 18.1 DEGREES REMARK 500 PRO A 88 C - N - CD ANGL. DEV. = -16.9 DEGREES REMARK 500 PRO A 88 N - CA - C ANGL. DEV. = 19.4 DEGREES REMARK 500 LEU A 104 CB - CG - CD1 ANGL. DEV. = 14.8 DEGREES REMARK 500 ASP A 105 CB - CG - OD1 ANGL. DEV. = -8.5 DEGREES REMARK 500 ASP A 105 CB - CG - OD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 LEU A 141 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 LEU A 145 CA - CB - CG ANGL. DEV. = -14.9 DEGREES REMARK 500 CYS A 232 CA - C - O ANGL. DEV. = -16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN L 29 82.66 -50.80 REMARK 500 GLN L 34 -78.27 -100.80 REMARK 500 LEU L 43 110.52 -160.06 REMARK 500 PRO L 59 -163.39 -73.41 REMARK 500 TYR L 65 175.50 65.27 REMARK 500 VAL L 99 145.43 -172.63 REMARK 500 ASP L 118 -167.54 -103.52 REMARK 500 ASP A 60 55.95 -115.45 REMARK 500 GLU A 63 -28.92 -36.22 REMARK 500 TYR A 74 120.56 -34.94 REMARK 500 GLU A 85 89.90 -41.07 REMARK 500 GLN A 135 99.05 -173.99 REMARK 500 LEU A 137 -91.36 -111.25 REMARK 500 SER A 138 144.46 164.33 REMARK 500 LYS A 140 -70.27 -40.23 REMARK 500 LEU A 141 -13.70 -48.31 REMARK 500 GLN A 208 -72.47 -54.57 REMARK 500 ARG A 214 75.38 50.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP A 86 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BMP RELATED DB: PDB REMARK 900 FREE (UNBOUND) BMP-7 SIGNAL LIGAND. REMARK 900 RELATED ID: 3BMP RELATED DB: PDB REMARK 900 STRUCTURALLY-RELATED LIGAND (BMP-2). REMARK 900 RELATED ID: 1ES7 RELATED DB: PDB REMARK 900 COMPLEX BETWEEN BMP-2 AND TWO BMP RECEPTOR IA ECTODOMAINS. DBREF 1M4U L 1 139 UNP P18075 BMP7_HUMAN 293 431 DBREF 1M4U A 28 232 UNP Q13253 NOGG_HUMAN 28 232 SEQADV 1M4U MET A 27 UNP Q13253 INITIATING METHIONINE SEQRES 1 L 139 SER THR GLY SER LYS GLN ARG SER GLN ASN ARG SER LYS SEQRES 2 L 139 THR PRO LYS ASN GLN GLU ALA LEU ARG MET ALA ASN VAL SEQRES 3 L 139 ALA GLU ASN SER SER SER ASP GLN ARG GLN ALA CYS LYS SEQRES 4 L 139 LYS HIS GLU LEU TYR VAL SER PHE ARG ASP LEU GLY TRP SEQRES 5 L 139 GLN ASP TRP ILE ILE ALA PRO GLU GLY TYR ALA ALA TYR SEQRES 6 L 139 TYR CYS GLU GLY GLU CYS ALA PHE PRO LEU ASN SER TYR SEQRES 7 L 139 MET ASN ALA THR ASN HIS ALA ILE VAL GLN THR LEU VAL SEQRES 8 L 139 HIS PHE ILE ASN PRO GLU THR VAL PRO LYS PRO CYS CYS SEQRES 9 L 139 ALA PRO THR GLN LEU ASN ALA ILE SER VAL LEU TYR PHE SEQRES 10 L 139 ASP ASP SER SER ASN VAL ILE LEU LYS LYS TYR ARG ASN SEQRES 11 L 139 MET VAL VAL ARG ALA CYS GLY CYS HIS SEQRES 1 A 206 MET GLN HIS TYR LEU HIS ILE ARG PRO ALA PRO SER ASP SEQRES 2 A 206 ASN LEU PRO LEU VAL ASP LEU ILE GLU HIS PRO ASP PRO SEQRES 3 A 206 ILE PHE ASP PRO LYS GLU LYS ASP LEU ASN GLU THR LEU SEQRES 4 A 206 LEU ARG SER LEU LEU GLY GLY HIS TYR ASP PRO GLY PHE SEQRES 5 A 206 MET ALA THR SER PRO PRO GLU ASP ARG PRO GLY GLY GLY SEQRES 6 A 206 GLY GLY ALA ALA GLY GLY ALA GLU ASP LEU ALA GLU LEU SEQRES 7 A 206 ASP GLN LEU LEU ARG GLN ARG PRO SER GLY ALA MET PRO SEQRES 8 A 206 SER GLU ILE LYS GLY LEU GLU PHE SER GLU GLY LEU ALA SEQRES 9 A 206 GLN GLY LYS LYS GLN ARG LEU SER LYS LYS LEU ARG ARG SEQRES 10 A 206 LYS LEU GLN MET TRP LEU TRP SER GLN THR PHE CYS PRO SEQRES 11 A 206 VAL LEU TYR ALA TRP ASN ASP LEU GLY SER ARG PHE TRP SEQRES 12 A 206 PRO ARG TYR VAL LYS VAL GLY SER CYS PHE SER LYS ARG SEQRES 13 A 206 SER CYS SER VAL PRO GLU GLY MET VAL CYS LYS PRO SER SEQRES 14 A 206 LYS SER VAL HIS LEU THR VAL LEU ARG TRP ARG CYS GLN SEQRES 15 A 206 ARG ARG GLY GLY GLN ARG CYS GLY TRP ILE PRO ILE GLN SEQRES 16 A 206 TYR PRO ILE ILE SER GLU CYS LYS CYS SER CYS MODRES 1M4U ASN L 80 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 HOH *46(H2 O) HELIX 1 1 ARG L 48 GLY L 51 5 4 HELIX 2 2 TYR L 78 ASN L 80 5 3 HELIX 3 3 THR L 82 ASN L 95 1 14 HELIX 4 4 LYS A 57 LEU A 61 5 5 HELIX 5 5 ASN A 62 GLY A 71 1 10 HELIX 6 6 GLY A 72 TYR A 74 5 3 HELIX 7 7 ALA A 98 GLN A 110 1 13 HELIX 8 8 PRO A 117 GLY A 122 1 6 HELIX 9 9 SER A 138 PHE A 154 1 17 HELIX 10 10 ARG A 209 GLN A 213 5 5 SHEET 1 A 2 LYS L 39 HIS L 41 0 SHEET 2 A 2 TYR L 66 GLU L 68 -1 O TYR L 66 N HIS L 41 SHEET 1 B 2 TYR L 44 SER L 46 0 SHEET 2 B 2 GLY L 61 ALA L 63 -1 O TYR L 62 N VAL L 45 SHEET 1 C 3 ILE L 56 ALA L 58 0 SHEET 2 C 3 CYS L 103 PHE L 117 -1 O LEU L 115 N ALA L 58 SHEET 3 C 3 VAL L 123 HIS L 139 -1 O ARG L 134 N GLN L 108 SHEET 1 D 2 LEU L 75 ASN L 76 0 SHEET 2 D 2 LEU A 31 HIS A 32 -1 O HIS A 32 N LEU L 75 SHEET 1 E 3 MET A 79 ALA A 80 0 SHEET 2 E 3 TYR A 172 SER A 177 -1 O TYR A 172 N ALA A 80 SHEET 3 E 3 LEU A 158 ASP A 163 -1 N ALA A 160 O VAL A 175 SHEET 1 F 3 PHE A 168 TRP A 169 0 SHEET 2 F 3 VAL A 191 CYS A 207 -1 O LEU A 203 N TRP A 169 SHEET 3 F 3 CYS A 215 SER A 231 -1 O TYR A 222 N LEU A 200 SSBOND 1 CYS L 38 CYS L 104 1555 1555 2.05 SSBOND 2 CYS L 67 CYS L 136 1555 1555 2.13 SSBOND 3 CYS L 71 CYS L 138 1555 1555 2.22 SSBOND 4 CYS L 103 CYS L 103 1555 8555 2.21 SSBOND 5 CYS A 155 CYS A 192 1555 1555 2.04 SSBOND 6 CYS A 178 CYS A 228 1555 1555 2.20 SSBOND 7 CYS A 184 CYS A 230 1555 1555 2.13 SSBOND 8 CYS A 207 CYS A 215 1555 1555 2.10 SSBOND 9 CYS A 232 CYS A 232 1555 8555 2.33 LINK ND2 ASN L 80 C1 NAG B 1 1555 1555 1.48 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.49 CISPEP 1 ALA L 58 PRO L 59 0 -1.38 CISPEP 2 PHE L 73 PRO L 74 0 -1.97 CISPEP 3 LEU A 41 PRO A 42 0 0.50 CISPEP 4 ARG A 87 PRO A 88 0 -7.00 CISPEP 5 TRP A 169 PRO A 170 0 -0.45 CISPEP 6 VAL A 186 PRO A 187 0 -8.42 CRYST1 99.834 99.834 150.327 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010017 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010017 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006652 0.00000