PDB Short entry for 1M7M HEADER HYDROLASE 22-JUL-02 1M7M TITLE A THEORETICAL MODEL OF HUMAN ADENOSINE DEAMINASE CAVEAT 1M7M CHIRALITY ERROR AT THE CA CENTER OF CYS A 153. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE DEAMINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.4.4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN KEYWDS HYDROLASE, NUCLEOTIDE METABOLISM, SCID, HEREDITARY KEYWDS 2 HEMOLYTIC ANEMIA, DISEASE MUTATION, POLYMORPHISM EXPDTA THEORETICAL MODEL AUTHOR R.RAVULAPALLI,S.MURUGANATHAM REVDAT 1 07-AUG-02 1M7M 0 JRNL AUTH R.RAVULAPALLI,S.MURUGANATHAM JRNL TITL A THEORETICAL MODEL OF HUMAN ADENOSINE DEAMINASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.K.WILSON,F.B.RUDOLPH,F.A.QUIOCHO REMARK 1 TITL ATOMIC STRUCTURE OF ADENOSINE DEAMINASE COMPLEXED REMARK 1 TITL 2 WITH A TRANSITION-STATE ANALOG: UNDERSTANDING REMARK 1 TITL 3 CATALYSIS AND IMMUNODEFICIENCY MUTATIONS REMARK 1 REF SCIENCE V. 252 1278 1991 REMARK 1 REFN ASTM SCIEAS US ISSN 0036-8075 REMARK 1 REFERENCE 2 REMARK 1 AUTH Z.WANG,F.A.QUIOCHO REMARK 1 TITL COMPLEXES OF ADENOSINE DEAMINASE WITH TWO POTENT REMARK 1 TITL 2 INHIBITORS: X-RAY STRUCTURES IN FOUR INDEPENDENT REMARK 1 TITL 3 MOLECULES AT PH OF MAXIMUM ACTIVITY REMARK 1 REF BIOCHEMISTRY V. 37 8314 1998 REMARK 1 REFN ASTM BICHAW US ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MODELER 2000 REMARK 3 AUTHORS : ANDREJ SALI ET AL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1M7M COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-2002. REMARK 100 THE RCSB ID CODE IS RCSB016696. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 116 N - CA - C ANGL. DEV. = 15.8 DEGREES REMARK 500 CYS A 153 N - CA - CB ANGL. DEV. = 16.2 DEGREES REMARK 500 ASN A 362 OD1 - CG - ND2 ANGL. DEV. = 16.4 DEGREES REMARK 500 ASN A 362 CB - CG - OD1 ANGL. DEV. =-76.4 DEGREES REMARK 500 ASN A 362 CB - CG - ND2 ANGL. DEV. =-21.7 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 6 -55.42 77.84 REMARK 500 THR A 176 -35.86 78.47 REMARK 500 HIS A 238 -99.31 78.36 REMARK 500 ASP A 295 -72.64 76.28 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ADA RELATED DB: PDB REMARK 900 2ADA CONTAINS ADENOSINE DEAMINASE COMPLEXED WITH A REMARK 900 TRANSITION-STATE ANALOG REMARK 900 RELATED ID: 1A4M RELATED DB: PDB REMARK 900 1A4M CONTAINS ADA COMPLEXED WITH PURINE RIBOSIDE DBREF 1M7M A 1 363 UNP P00813 ADA_HUMAN 1 363 SEQRES 1 A 363 MET ALA GLN THR PRO ALA PHE ASP LYS PRO LYS VAL GLU SEQRES 2 A 363 LEU HIS VAL HIS LEU ASP GLY SER ILE LYS PRO GLU THR SEQRES 3 A 363 ILE LEU TYR TYR GLY ARG ARG ARG GLY ILE ALA LEU PRO SEQRES 4 A 363 ALA ASN THR ALA GLU GLY LEU LEU ASN VAL ILE GLY MET SEQRES 5 A 363 ASP LYS PRO LEU THR LEU PRO ASP PHE LEU ALA LYS PHE SEQRES 6 A 363 ASP TYR TYR MET PRO ALA ILE ALA GLY CYS ARG GLU ALA SEQRES 7 A 363 ILE LYS ARG ILE ALA TYR GLU PHE VAL GLU MET LYS ALA SEQRES 8 A 363 LYS GLU GLY VAL VAL TYR VAL GLU VAL ARG TYR SER PRO SEQRES 9 A 363 HIS LEU LEU ALA ASN SER LYS VAL GLU PRO ILE PRO TRP SEQRES 10 A 363 ASN GLN ALA GLU GLY ASP LEU THR PRO ASP GLU VAL VAL SEQRES 11 A 363 ALA LEU VAL GLY GLN GLY LEU GLN GLU GLY GLU ARG ASP SEQRES 12 A 363 PHE GLY VAL LYS ALA ARG SER ILE LEU CYS CYS MET ARG SEQRES 13 A 363 HIS GLN PRO ASN TRP SER PRO LYS VAL VAL GLU LEU CYS SEQRES 14 A 363 LYS LYS TYR GLN GLN GLN THR VAL VAL ALA ILE ASP LEU SEQRES 15 A 363 ALA GLY ASP GLU THR ILE PRO GLY SER SER LEU LEU PRO SEQRES 16 A 363 GLY HIS VAL GLN ALA TYR GLN GLU ALA VAL LYS SER GLY SEQRES 17 A 363 ILE HIS ARG THR VAL HIS ALA GLY GLU VAL GLY SER ALA SEQRES 18 A 363 GLU VAL VAL LYS GLU ALA VAL ASP ILE LEU LYS THR GLU SEQRES 19 A 363 ARG LEU GLY HIS GLY TYR HIS THR LEU GLU ASP GLN ALA SEQRES 20 A 363 LEU TYR ASN ARG LEU ARG GLN GLU ASN MET HIS PHE GLU SEQRES 21 A 363 ILE CYS PRO TRP SER SER TYR LEU THR GLY ALA TRP LYS SEQRES 22 A 363 PRO ASP THR GLU HIS ALA VAL ILE ARG LEU LYS ASN ASP SEQRES 23 A 363 GLN ALA ASN TYR SER LEU ASN THR ASP ASP PRO LEU ILE SEQRES 24 A 363 PHE LYS SER THR LEU ASP THR ASP TYR GLN MET THR LYS SEQRES 25 A 363 ARG ASP MET GLY PHE THR GLU GLU GLU PHE LYS ARG LEU SEQRES 26 A 363 ASN ILE ASN ALA ALA LYS SER SER PHE LEU PRO GLU ASP SEQRES 27 A 363 GLU LYS ARG GLU LEU LEU ASP LEU LEU TYR LYS ALA TYR SEQRES 28 A 363 GLY MET PRO PRO SER ALA SER ALA GLY GLN ASN LEU HELIX 1 1 LYS A 23 GLY A 35 1 13 HELIX 2 2 THR A 42 GLY A 51 1 10 HELIX 3 3 THR A 57 ALA A 63 1 7 HELIX 4 4 LYS A 64 ALA A 73 1 10 HELIX 5 5 CYS A 75 GLY A 94 1 20 HELIX 6 6 SER A 103 ALA A 108 1 6 HELIX 7 7 THR A 125 GLY A 145 1 21 HELIX 8 8 TRP A 161 TYR A 172 1 12 HELIX 9 9 GLY A 190 LEU A 193 5 4 HELIX 10 10 LEU A 194 GLY A 208 1 15 HELIX 11 11 SER A 220 ILE A 230 1 11 HELIX 12 12 TYR A 240 GLU A 244 5 5 HELIX 13 13 ASP A 245 ASN A 256 1 12 HELIX 14 14 CYS A 262 GLY A 270 1 9 HELIX 15 15 HIS A 278 GLN A 287 1 10 HELIX 16 16 ASP A 296 LYS A 301 1 6 HELIX 17 17 THR A 303 ASP A 314 1 12 HELIX 18 18 THR A 318 SER A 332 1 15 HELIX 19 19 PRO A 336 GLY A 352 1 17 SHEET 1 A 8 LYS A 11 HIS A 17 0 SHEET 2 A 8 VAL A 95 TYR A 102 1 O ARG A 101 N VAL A 16 SHEET 3 A 8 LYS A 147 MET A 155 1 O ILE A 151 N VAL A 100 SHEET 4 A 8 VAL A 177 ALA A 183 1 O ALA A 183 N CYS A 154 SHEET 5 A 8 HIS A 210 ALA A 215 1 O THR A 212 N ILE A 180 SHEET 6 A 8 ARG A 235 HIS A 238 1 O GLY A 237 N VAL A 213 SHEET 7 A 8 HIS A 258 ILE A 261 1 O GLU A 260 N LEU A 236 SHEET 8 A 8 ASN A 289 LEU A 292 1 O ASN A 289 N PHE A 259 CISPEP 1 GLU A 113 PRO A 114 0 -1.69 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000