PDB Short entry for 1MI2 HEADER CYTOKINE 24-OCT-97 1MI2 TITLE SOLUTION STRUCTURE OF MURINE MACROPHAGE INFLAMMATORY PROTEIN-2, NMR, TITLE 2 20 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE INFLAMMATORY PROTEIN-2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PPIC9 KEYWDS MIP-2, CHEMOKINE, CYTOKINE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.SHAO,L.F.JERVA,J.WEST,E.LOLIS,B.I.SCHWEITZER REVDAT 4 23-FEB-22 1MI2 1 REMARK REVDAT 3 24-FEB-09 1MI2 1 VERSN REVDAT 2 20-JAN-00 1MI2 1 JRNL REVDAT 1 29-APR-98 1MI2 0 JRNL AUTH W.SHAO,L.F.JERVA,J.WEST,E.LOLIS,B.I.SCHWEITZER JRNL TITL SOLUTION STRUCTURE OF MURINE MACROPHAGE INFLAMMATORY JRNL TITL 2 PROTEIN-2. JRNL REF BIOCHEMISTRY V. 37 8303 1998 JRNL REFN ISSN 0006-2960 JRNL PMID 9622482 JRNL DOI 10.1021/BI980112R REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES OF THE MURINE MACROPHAGE REMARK 3 INFLAMMATORY PROTEIN-2 (MIP-2) WERE GENERATED USING TORSION- REMARK 3 ANGLE MOLECULAR DYNAMICS APPROACH (STEIN, E.G., RICE, L.M., & REMARK 3 BRUNGER, A.T. (1997) J. MAGN. RESON. 124, 154-164) AND X-PLOR REMARK 3 3.851 (ONLINE)(BRUNGER, A.T. (1992) X-PLOR (VERSION 3.1) MANUAL, REMARK 3 YALE UNIVERSITY PRESS) BASED ON A TOTAL OF 2740 EXPERIMENTAL REMARK 3 RESTRAINTS, COMPRISING 2596 NOE-DERIVED DISTANCE RESTRAINTS, 44 REMARK 3 DISTANCE RESTRAINTS FOR 22 HYDROGEN BONDS, AND 100 TORSION ANGLE REMARK 3 RESTRAINTS DERIVED FROM NOE AND COUPLING CONSTANT MEASUREMENTS. REMARK 4 REMARK 4 1MI2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175011. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; HSQC; COSY; ROESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.851 REMARK 210 METHOD USED : TORSION-ANGLE MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-20 REMARK 470 RES CSSEQI ATOMS REMARK 470 ASN A 73 O REMARK 470 ASN B 73 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 15 H ASP A 53 1.45 REMARK 500 O LEU B 15 H ASP B 53 1.45 REMARK 500 O GLN A 60 H GLN A 64 1.49 REMARK 500 O GLN B 60 H GLN B 64 1.49 REMARK 500 O VAL B 18 N PHE B 20 1.94 REMARK 500 O VAL A 18 N PHE A 20 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 6 -121.45 -127.30 REMARK 500 1 ARG A 8 -103.88 -98.69 REMARK 500 1 CYS A 9 -144.15 -144.84 REMARK 500 1 ARG A 17 60.25 -163.44 REMARK 500 1 VAL A 18 165.11 -40.85 REMARK 500 1 ASP A 19 72.67 -34.96 REMARK 500 1 PHE A 20 -78.73 -40.94 REMARK 500 1 ILE A 23 98.60 -39.04 REMARK 500 1 PRO A 33 49.59 -76.42 REMARK 500 1 HIS A 34 -51.92 177.85 REMARK 500 1 ALA A 36 21.69 42.06 REMARK 500 1 GLN A 37 138.18 -175.10 REMARK 500 1 GLN A 48 95.86 -164.71 REMARK 500 1 VAL A 50 -159.91 -170.67 REMARK 500 1 ASP A 53 173.22 -23.03 REMARK 500 1 ALA A 56 68.53 35.29 REMARK 500 1 GLU B 6 -121.51 -127.35 REMARK 500 1 ARG B 8 -103.94 -98.71 REMARK 500 1 CYS B 9 -144.20 -144.76 REMARK 500 1 ARG B 17 60.25 -163.44 REMARK 500 1 VAL B 18 165.00 -40.75 REMARK 500 1 ASP B 19 72.57 -34.92 REMARK 500 1 PHE B 20 -78.81 -40.74 REMARK 500 1 ILE B 23 98.60 -38.95 REMARK 500 1 PRO B 33 49.47 -76.44 REMARK 500 1 HIS B 34 -51.84 177.88 REMARK 500 1 ALA B 36 21.60 42.22 REMARK 500 1 GLN B 37 138.21 -175.16 REMARK 500 1 GLN B 48 95.92 -164.77 REMARK 500 1 VAL B 50 -159.90 -170.64 REMARK 500 1 ASP B 53 173.14 -23.05 REMARK 500 1 ALA B 56 68.50 35.26 REMARK 500 2 VAL A 2 -165.85 -67.95 REMARK 500 2 VAL A 3 86.10 -58.37 REMARK 500 2 GLU A 6 42.43 -91.46 REMARK 500 2 LEU A 7 48.17 -85.88 REMARK 500 2 ARG A 8 -122.30 -98.14 REMARK 500 2 CYS A 9 -158.36 -133.92 REMARK 500 2 ARG A 17 55.27 -176.56 REMARK 500 2 VAL A 18 169.82 -41.37 REMARK 500 2 ASP A 19 74.73 -38.41 REMARK 500 2 PHE A 20 -78.36 -44.20 REMARK 500 2 ILE A 23 111.55 -37.59 REMARK 500 2 SER A 25 126.58 -170.09 REMARK 500 2 PRO A 33 47.36 -77.55 REMARK 500 2 HIS A 34 -49.69 -179.98 REMARK 500 2 ALA A 36 16.91 48.55 REMARK 500 2 GLN A 48 101.67 -172.91 REMARK 500 2 VAL A 50 -168.76 -170.76 REMARK 500 2 ASP A 53 -163.29 -46.76 REMARK 500 REMARK 500 THIS ENTRY HAS 720 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 8 0.24 SIDE CHAIN REMARK 500 1 ARG A 17 0.18 SIDE CHAIN REMARK 500 1 ARG B 8 0.24 SIDE CHAIN REMARK 500 1 ARG B 17 0.18 SIDE CHAIN REMARK 500 2 ARG A 8 0.14 SIDE CHAIN REMARK 500 2 ARG A 17 0.31 SIDE CHAIN REMARK 500 2 ARG B 8 0.14 SIDE CHAIN REMARK 500 2 ARG B 17 0.31 SIDE CHAIN REMARK 500 3 ARG A 8 0.16 SIDE CHAIN REMARK 500 3 ARG A 17 0.30 SIDE CHAIN REMARK 500 3 ARG B 8 0.16 SIDE CHAIN REMARK 500 3 ARG B 17 0.30 SIDE CHAIN REMARK 500 4 ARG A 8 0.28 SIDE CHAIN REMARK 500 4 ARG A 17 0.28 SIDE CHAIN REMARK 500 4 ARG B 8 0.28 SIDE CHAIN REMARK 500 4 ARG B 17 0.28 SIDE CHAIN REMARK 500 5 ARG A 8 0.31 SIDE CHAIN REMARK 500 5 ARG A 17 0.28 SIDE CHAIN REMARK 500 5 ARG B 8 0.31 SIDE CHAIN REMARK 500 5 ARG B 17 0.28 SIDE CHAIN REMARK 500 6 ARG A 17 0.11 SIDE CHAIN REMARK 500 6 ARG B 17 0.11 SIDE CHAIN REMARK 500 7 ARG A 8 0.10 SIDE CHAIN REMARK 500 7 ARG A 17 0.22 SIDE CHAIN REMARK 500 7 ARG B 8 0.10 SIDE CHAIN REMARK 500 7 ARG B 17 0.22 SIDE CHAIN REMARK 500 8 ARG A 8 0.30 SIDE CHAIN REMARK 500 8 ARG A 17 0.20 SIDE CHAIN REMARK 500 8 ARG B 8 0.30 SIDE CHAIN REMARK 500 8 ARG B 17 0.20 SIDE CHAIN REMARK 500 9 ARG A 8 0.14 SIDE CHAIN REMARK 500 9 ARG A 17 0.29 SIDE CHAIN REMARK 500 9 ARG B 8 0.14 SIDE CHAIN REMARK 500 9 ARG B 17 0.29 SIDE CHAIN REMARK 500 10 ARG A 8 0.16 SIDE CHAIN REMARK 500 10 ARG A 17 0.18 SIDE CHAIN REMARK 500 10 ARG B 8 0.16 SIDE CHAIN REMARK 500 10 ARG B 17 0.18 SIDE CHAIN REMARK 500 11 ARG A 8 0.16 SIDE CHAIN REMARK 500 11 ARG A 17 0.19 SIDE CHAIN REMARK 500 11 ARG B 8 0.16 SIDE CHAIN REMARK 500 11 ARG B 17 0.19 SIDE CHAIN REMARK 500 12 ARG A 8 0.29 SIDE CHAIN REMARK 500 12 ARG A 17 0.27 SIDE CHAIN REMARK 500 12 ARG B 8 0.29 SIDE CHAIN REMARK 500 12 ARG B 17 0.27 SIDE CHAIN REMARK 500 13 ARG A 8 0.23 SIDE CHAIN REMARK 500 13 ARG B 8 0.23 SIDE CHAIN REMARK 500 14 ARG A 17 0.16 SIDE CHAIN REMARK 500 14 ARG B 17 0.16 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 74 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1MI2 A 1 73 UNP P10889 MIP2_MOUSE 28 100 DBREF 1MI2 B 1 73 UNP P10889 MIP2_MOUSE 28 100 SEQRES 1 A 73 ALA VAL VAL ALA SER GLU LEU ARG CYS GLN CYS LEU LYS SEQRES 2 A 73 THR LEU PRO ARG VAL ASP PHE LYS ASN ILE GLN SER LEU SEQRES 3 A 73 SER VAL THR PRO PRO GLY PRO HIS CYS ALA GLN THR GLU SEQRES 4 A 73 VAL ILE ALA THR LEU LYS GLY GLY GLN LYS VAL CYS LEU SEQRES 5 A 73 ASP PRO GLU ALA PRO LEU VAL GLN LYS ILE ILE GLN LYS SEQRES 6 A 73 ILE LEU ASN LYS GLY LYS ALA ASN SEQRES 1 B 73 ALA VAL VAL ALA SER GLU LEU ARG CYS GLN CYS LEU LYS SEQRES 2 B 73 THR LEU PRO ARG VAL ASP PHE LYS ASN ILE GLN SER LEU SEQRES 3 B 73 SER VAL THR PRO PRO GLY PRO HIS CYS ALA GLN THR GLU SEQRES 4 B 73 VAL ILE ALA THR LEU LYS GLY GLY GLN LYS VAL CYS LEU SEQRES 5 B 73 ASP PRO GLU ALA PRO LEU VAL GLN LYS ILE ILE GLN LYS SEQRES 6 B 73 ILE LEU ASN LYS GLY LYS ALA ASN HELIX 1 1 GLN A 60 GLY A 70 1 11 HELIX 2 2 GLN B 60 GLY B 70 1 11 SHEET 1 A 3 SER A 25 THR A 29 0 SHEET 2 A 3 GLU A 39 THR A 43 -1 N THR A 43 O SER A 25 SHEET 3 A 3 LYS A 49 LEU A 52 -1 N LEU A 52 O VAL A 40 SHEET 1 B 3 SER B 25 THR B 29 0 SHEET 2 B 3 GLU B 39 THR B 43 -1 N THR B 43 O SER B 25 SHEET 3 B 3 LYS B 49 LEU B 52 -1 N LEU B 52 O VAL B 40 SSBOND 1 CYS A 9 CYS A 35 1555 1555 2.02 SSBOND 2 CYS A 11 CYS A 51 1555 1555 2.02 SSBOND 3 CYS B 9 CYS B 35 1555 1555 2.02 SSBOND 4 CYS B 11 CYS B 51 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000