PDB Short entry for 1MJD HEADER SIGNALING PROTEIN 27-AUG-02 1MJD TITLE STRUCTURE OF N-TERMINAL DOMAIN OF HUMAN DOUBLECORTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOUBLECORTIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES (45-150); COMPND 5 SYNONYM: LISSENCEPHALIN-X, LIS-X, DOUBLIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DCX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: GSTUNI1 KEYWDS DCX DOMAIN, UBIQUITIN-LIKE FOLD, MICROTUBULE ASSOCIATED PROTEIN, KEYWDS 2 SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.H.KIM,T.CIERPICKI,U.DEREWENDA,D.KROWARSCH,Y.FENG,Y.DEVEDJIEV, AUTHOR 2 Z.DAUTER,C.A.WALSH,J.OTLEWSKI,J.H.BUSHWELLER,Z.S.DEREWENDA REVDAT 5 23-FEB-22 1MJD 1 REMARK SEQADV REVDAT 4 24-FEB-09 1MJD 1 VERSN REVDAT 3 13-MAY-03 1MJD 2 JRNL REVDAT 2 06-MAY-03 1MJD 1 JRNL REVDAT 1 29-APR-03 1MJD 0 JRNL AUTH M.H.KIM,T.CIERPICKI,U.DEREWENDA,D.KROWARSCH,Y.FENG, JRNL AUTH 2 Y.DEVEDJIEV,Z.DAUTER,C.A.WALSH,J.OTLEWSKI,J.H.BUSHWELLER, JRNL AUTH 3 Z.S.DEREWENDA JRNL TITL THE DCX-DOMAIN TANDEMS OF DOUBLECORTIN AND DOUBLECORTIN-LIKE JRNL TITL 2 KINASE JRNL REF NAT.STRUCT.BIOL. V. 10 324 2003 JRNL REFN ISSN 1072-8368 JRNL PMID 12692530 JRNL DOI 10.1038/NSB918 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.CIERPICKI,M.H.KIM,J.OTLEWSKI,Z.S.DEREWENDA,J.H.BUSHWELLER REMARK 1 TITL LETTER TO THE EDITOR: ASSIGNMENT OF 1H, 13C AND 15N REMARK 1 TITL 2 RESONANCES OF THE N-TERMINAL MICROTUBULE-BINDING DOMAIN OF REMARK 1 TITL 3 HUMAN DOUBLECORTIN REMARK 1 REF J.BIOMOL.NMR V. 25 81 2003 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1021981207062 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.1, CNS 1.0 REMARK 3 AUTHORS : DELAGLIO, F., GRZESIEK, S., VUISTER, G.W., ZHU, REMARK 3 G., PFEIFER, J., BAX, A. (NMRPIPE), BRUNGER, A.T., REMARK 3 ADAMS, P.D., CLORE, G.M., DELANO, W.L., GROS, P., REMARK 3 GROSSE-KUNSTLEVE, R.W., JIANG, J.S., KUSZEWSKI, J., REMARK 3 NILGES, M., PANNU, N.S. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NOESY CROSS-PEAKS WERE ASSIGNED USING REMARK 3 COMBINATION OF MANUAL AND AUTOMATIC ASSIGNMENT EMPLOYING NOAH/ REMARK 3 DYANA PROGRAM. THE FINAL SET OF STRUCTURES WAS REFINED IN CNS. REMARK 4 REMARK 4 1MJD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-02. REMARK 100 THE DEPOSITION ID IS D_1000016956. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM DOUBLECORTIN 45-150 U-15N, REMARK 210 13C; 50MM PHOSPHATE BUFFER; 5MMM REMARK 210 DTT REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.100, DYANA 1.5 REMARK 210 METHOD USED : AUTOMATIC NOESY CROSS-PEAKS REMARK 210 ASSIGNMENT, TORSION ANGLE REMARK 210 DYNAMICS, SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 18 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 39 88.61 -156.12 REMARK 500 1 MET A 40 -60.92 -90.52 REMARK 500 1 ASP A 41 88.12 -158.27 REMARK 500 1 PHE A 44 73.78 -156.75 REMARK 500 1 ALA A 45 28.96 -163.69 REMARK 500 1 LEU A 46 88.09 -160.69 REMARK 500 1 SER A 47 130.58 64.48 REMARK 500 1 ALA A 52 -176.78 68.98 REMARK 500 1 ASP A 62 -47.82 -146.81 REMARK 500 1 ARG A 63 -78.23 64.32 REMARK 500 1 ASP A 93 1.81 -150.24 REMARK 500 1 ASN A 94 34.40 34.22 REMARK 500 1 ILE A 95 -76.87 -126.70 REMARK 500 1 GLN A 99 43.32 -95.17 REMARK 500 1 VAL A 101 115.83 -163.45 REMARK 500 1 SER A 129 -50.81 -152.70 REMARK 500 1 ASP A 130 32.85 -149.94 REMARK 500 1 PHE A 133 121.18 66.85 REMARK 500 1 THR A 139 17.52 -150.70 REMARK 500 1 VAL A 148 27.83 -150.72 REMARK 500 2 ASP A 41 85.56 60.73 REMARK 500 2 GLU A 43 -59.51 73.55 REMARK 500 2 PHE A 44 30.84 -86.59 REMARK 500 2 ASN A 48 117.37 68.91 REMARK 500 2 LYS A 51 146.17 63.21 REMARK 500 2 ALA A 52 160.42 62.50 REMARK 500 2 ASP A 62 -46.65 -142.61 REMARK 500 2 ARG A 63 35.27 35.72 REMARK 500 2 TYR A 64 26.81 -152.96 REMARK 500 2 SER A 92 126.97 -34.73 REMARK 500 2 ASN A 94 29.66 -163.89 REMARK 500 2 ILE A 95 -57.20 -130.58 REMARK 500 2 VAL A 101 114.74 -165.89 REMARK 500 2 SER A 129 -48.07 -153.02 REMARK 500 2 ASP A 130 31.98 -149.63 REMARK 500 2 ASN A 131 -163.91 -107.59 REMARK 500 2 PHE A 132 50.79 -151.83 REMARK 500 2 PHE A 133 111.32 42.10 REMARK 500 2 LYS A 135 94.28 37.74 REMARK 500 2 ASN A 143 119.16 76.45 REMARK 500 2 PRO A 144 36.96 -84.97 REMARK 500 2 ASN A 149 54.36 -92.95 REMARK 500 3 ALA A 39 -64.64 -175.20 REMARK 500 3 ASP A 41 -58.26 -159.17 REMARK 500 3 ALA A 45 171.76 76.05 REMARK 500 3 LEU A 46 47.07 -159.06 REMARK 500 3 SER A 47 -78.81 63.43 REMARK 500 3 ASN A 48 -49.69 -158.14 REMARK 500 3 LYS A 51 167.19 63.79 REMARK 500 3 ALA A 52 162.49 71.13 REMARK 500 REMARK 500 THIS ENTRY HAS 401 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5482 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFTS REMARK 900 RELATED ID: 1MG4 RELATED DB: PDB REMARK 900 STRUCTURE OF DCX DOMAINS: IMPLICATIONS FOR MICROTUBULE BUNDLING AND REMARK 900 CEREBRAL CORTEX DEVELOPMENT REMARK 900 RELATED ID: 1MFW RELATED DB: PDB REMARK 900 STRUCTURE OF THE DCX DOMAINS: IMPLICATIONS FOR MICROTUBULE BUNDLING REMARK 900 AND CEREBRAL CORTEX DEVELOPMENT DBREF 1MJD A 45 150 UNP O43602 DCX_HUMAN 87 192 SEQADV 1MJD GLY A 38 UNP O43602 CLONING ARTIFACT SEQADV 1MJD ALA A 39 UNP O43602 CLONING ARTIFACT SEQADV 1MJD MET A 40 UNP O43602 CLONING ARTIFACT SEQADV 1MJD ASP A 41 UNP O43602 CLONING ARTIFACT SEQADV 1MJD PRO A 42 UNP O43602 CLONING ARTIFACT SEQADV 1MJD GLU A 43 UNP O43602 CLONING ARTIFACT SEQADV 1MJD PHE A 44 UNP O43602 CLONING ARTIFACT SEQRES 1 A 113 GLY ALA MET ASP PRO GLU PHE ALA LEU SER ASN GLU LYS SEQRES 2 A 113 LYS ALA LYS LYS VAL ARG PHE TYR ARG ASN GLY ASP ARG SEQRES 3 A 113 TYR PHE LYS GLY ILE VAL TYR ALA VAL SER SER ASP ARG SEQRES 4 A 113 PHE ARG SER PHE ASP ALA LEU LEU ALA ASP LEU THR ARG SEQRES 5 A 113 SER LEU SER ASP ASN ILE ASN LEU PRO GLN GLY VAL ARG SEQRES 6 A 113 TYR ILE TYR THR ILE ASP GLY SER ARG LYS ILE GLY SER SEQRES 7 A 113 MET ASP GLU LEU GLU GLU GLY GLU SER TYR VAL CYS SER SEQRES 8 A 113 SER ASP ASN PHE PHE LYS LYS VAL GLU TYR THR LYS ASN SEQRES 9 A 113 VAL ASN PRO ASN TRP SER VAL ASN VAL HELIX 1 1 SER A 79 SER A 92 1 14 HELIX 2 2 SER A 115 LEU A 119 5 5 SHEET 1 A 5 ILE A 68 VAL A 72 0 SHEET 2 A 5 LYS A 53 ARG A 59 -1 N PHE A 57 O ILE A 68 SHEET 3 A 5 GLU A 123 SER A 128 1 O TYR A 125 N TYR A 58 SHEET 4 A 5 TYR A 103 THR A 106 -1 N TYR A 105 O VAL A 126 SHEET 5 A 5 LYS A 112 ILE A 113 -1 O ILE A 113 N ILE A 104 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000