PDB Short entry for 1MM5 HEADER TRANSFERASE 03-SEP-02 1MM5 TITLE SOLUTION NMR STRUCTURE OF THE OUTER MEMBRANE ENZYME PAGP IN OG TITLE 2 MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRCA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PAGP ENZYME; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: CRCA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS ETA BARREL, PALMITOYLTRANSFERASE, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.M.HWANG,W.-Y.CHOY,E.I.LO,L.CHEN,J.D.FORMAN-KAY,C.R.H.RAETZ, AUTHOR 2 G.G.PRIVE,R.E.BISHOP,L.E.KAY REVDAT 4 23-FEB-22 1MM5 1 REMARK SEQADV REVDAT 3 24-FEB-09 1MM5 1 VERSN REVDAT 2 01-NOV-02 1MM5 1 JRNL REVDAT 1 13-SEP-02 1MM5 0 JRNL AUTH P.M.HWANG,W.-Y.CHOY,E.I.LO,L.CHEN,J.D.FORMAN-KAY, JRNL AUTH 2 C.R.H.RAETZ,G.G.PRIVE,R.E.BISHOP,L.E.KAY JRNL TITL SOLUTION STRUCTURE AND DYNAMICS OF THE OUTER MEMBRANE ENZYME JRNL TITL 2 PAGP BY NMR JRNL REF PROC.NATL.ACAD.SCI.USA V. 99 13560 2002 JRNL REFN ISSN 0027-8424 JRNL PMID 12357033 JRNL DOI 10.1073/PNAS.212344499 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.1, CNS 1.0 REMARK 3 AUTHORS : DELAGLIO (NMRPIPE), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MM5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-02. REMARK 100 THE DEPOSITION ID IS D_1000017011. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 50 MM PHOSPHATE REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM PAGP U-2H,15N,13C; 50 MM REMARK 210 PHOSPHATE BUFFER; 200 MM OG REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 4D_15N-SEPARATED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 4.0, CNS 1.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 2 -174.54 -62.37 REMARK 500 1 GLU A 22 110.86 60.29 REMARK 500 1 ALA A 30 -65.20 -150.31 REMARK 500 1 LYS A 41 31.51 -149.46 REMARK 500 1 THR A 44 36.13 -151.66 REMARK 500 1 LYS A 64 34.99 -92.08 REMARK 500 1 ASN A 80 109.04 61.09 REMARK 500 1 LYS A 81 118.65 -175.81 REMARK 500 1 PRO A 96 -167.75 -72.12 REMARK 500 1 LEU A 97 -73.26 -93.12 REMARK 500 1 ASP A 99 -177.78 -66.75 REMARK 500 1 GLU A 100 -45.86 -155.06 REMARK 500 1 TRP A 118 32.79 -98.83 REMARK 500 1 ASN A 119 -43.69 -165.75 REMARK 500 1 TYR A 120 48.58 -92.98 REMARK 500 1 THR A 147 -61.15 -127.75 REMARK 500 1 TYR A 148 -60.07 -168.91 REMARK 500 1 ASN A 152 57.34 -173.56 REMARK 500 1 GLU A 164 -78.00 63.41 REMARK 500 1 HIS A 166 -46.49 -130.47 REMARK 500 1 HIS A 168 -66.11 -120.05 REMARK 500 1 HIS A 169 -68.04 68.47 REMARK 500 2 ALA A 30 -75.58 -114.68 REMARK 500 2 ARG A 36 30.95 -146.65 REMARK 500 2 PHE A 37 29.76 -159.33 REMARK 500 2 TYR A 39 85.88 -64.41 REMARK 500 2 LYS A 41 36.14 -140.49 REMARK 500 2 GLU A 42 -66.54 -97.13 REMARK 500 2 LYS A 43 -67.37 -162.22 REMARK 500 2 THR A 44 -62.11 -161.63 REMARK 500 2 ASP A 45 -72.39 -118.65 REMARK 500 2 ARG A 46 110.52 -164.81 REMARK 500 2 LYS A 64 35.09 -93.10 REMARK 500 2 TRP A 79 38.15 -178.16 REMARK 500 2 ASN A 80 -77.58 -109.30 REMARK 500 2 PRO A 96 -168.26 -73.68 REMARK 500 2 ASN A 117 -47.62 -140.97 REMARK 500 2 TRP A 118 -64.40 -95.40 REMARK 500 2 ASN A 119 -63.97 -160.71 REMARK 500 2 TYR A 120 44.15 -166.61 REMARK 500 2 TYR A 148 -72.82 -177.13 REMARK 500 2 ASN A 152 32.48 -165.56 REMARK 500 2 HIS A 167 100.94 60.46 REMARK 500 3 PHE A 37 66.21 -114.79 REMARK 500 3 TYR A 39 84.01 -64.54 REMARK 500 3 LYS A 41 71.25 -117.52 REMARK 500 3 GLU A 42 75.81 -166.02 REMARK 500 3 LYS A 43 46.23 -92.25 REMARK 500 3 LYS A 64 35.21 -90.56 REMARK 500 3 TRP A 79 -78.43 -88.68 REMARK 500 REMARK 500 THIS ENTRY HAS 402 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MM4 RELATED DB: PDB DBREF 1MM5 A 2 162 UNP P37001 CRCA_ECOLI 26 186 SEQADV 1MM5 MET A 1 UNP P37001 EXPRESSION TAG SEQADV 1MM5 LEU A 163 UNP P37001 EXPRESSION TAG SEQADV 1MM5 GLU A 164 UNP P37001 EXPRESSION TAG SEQADV 1MM5 HIS A 165 UNP P37001 EXPRESSION TAG SEQADV 1MM5 HIS A 166 UNP P37001 EXPRESSION TAG SEQADV 1MM5 HIS A 167 UNP P37001 EXPRESSION TAG SEQADV 1MM5 HIS A 168 UNP P37001 EXPRESSION TAG SEQADV 1MM5 HIS A 169 UNP P37001 EXPRESSION TAG SEQADV 1MM5 HIS A 170 UNP P37001 EXPRESSION TAG SEQRES 1 A 170 MET ASN ALA ASP GLU TRP MET THR THR PHE ARG GLU ASN SEQRES 2 A 170 ILE ALA GLN THR TRP GLN GLN PRO GLU HIS TYR ASP LEU SEQRES 3 A 170 TYR ILE PRO ALA ILE THR TRP HIS ALA ARG PHE ALA TYR SEQRES 4 A 170 ASP LYS GLU LYS THR ASP ARG TYR ASN GLU ARG PRO TRP SEQRES 5 A 170 GLY GLY GLY PHE GLY LEU SER ARG TRP ASP GLU LYS GLY SEQRES 6 A 170 ASN TRP HIS GLY LEU TYR ALA MET ALA PHE LYS ASP SER SEQRES 7 A 170 TRP ASN LYS TRP GLU PRO ILE ALA GLY TYR GLY TRP GLU SEQRES 8 A 170 SER THR TRP ARG PRO LEU ALA ASP GLU ASN PHE HIS LEU SEQRES 9 A 170 GLY LEU GLY PHE THR ALA GLY VAL THR ALA ARG ASP ASN SEQRES 10 A 170 TRP ASN TYR ILE PRO LEU PRO VAL LEU LEU PRO LEU ALA SEQRES 11 A 170 SER VAL GLY TYR GLY PRO VAL THR PHE GLN MET THR TYR SEQRES 12 A 170 ILE PRO GLY THR TYR ASN ASN GLY ASN VAL TYR PHE ALA SEQRES 13 A 170 TRP MET ARG PHE GLN PHE LEU GLU HIS HIS HIS HIS HIS SEQRES 14 A 170 HIS HELIX 1 1 ASN A 2 GLN A 20 1 19 SHEET 1 A 9 TYR A 24 THR A 32 0 SHEET 2 A 9 GLY A 53 ASP A 62 -1 O GLY A 57 N ASP A 25 SHEET 3 A 9 ASN A 66 LYS A 76 -1 O ALA A 72 N PHE A 56 SHEET 4 A 9 TRP A 82 TRP A 94 -1 O ILE A 85 N MET A 73 SHEET 5 A 9 HIS A 103 THR A 113 -1 O LEU A 106 N SER A 92 SHEET 6 A 9 LEU A 123 TYR A 134 -1 O LEU A 129 N GLY A 107 SHEET 7 A 9 VAL A 137 PRO A 145 -1 O VAL A 137 N TYR A 134 SHEET 8 A 9 ASN A 152 PHE A 162 -1 O TRP A 157 N GLN A 140 SHEET 9 A 9 TYR A 24 THR A 32 -1 N TYR A 24 O PHE A 162 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000