PDB Short entry for 1MNM HEADER TRANSCRIPTION/DNA 03-NOV-97 1MNM TITLE YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL TITLE 2 STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (STE6 OPERATOR DNA); COMPND 3 CHAIN: E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (STE6 OPERATOR DNA); COMPND 7 CHAIN: F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR); COMPND 11 CHAIN: A, B; COMPND 12 FRAGMENT: RESIDUES 1 - 100; COMPND 13 SYNONYM: PHEROMONE RECEPTOR TRANSCRIPTION FACTOR; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: PROTEIN (MAT ALPHA-2 TRANSCRIPTIONAL REPRESSOR); COMPND 17 CHAIN: C, D; COMPND 18 FRAGMENT: RESIDUES 113 - 189; COMPND 19 SYNONYM: MATING-TYPE PROTEIN ALPHA-2; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 4932; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 4; SOURCE 16 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 17 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 18 ORGANISM_TAXID: 4932; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION REGULATION, TRANSCRIPTIONAL REPRESSION, DNA-BINDING KEYWDS 2 PROTEIN, COMPLEX (TRANSCRIPTION-HOMEOBOX-DNA), TRANSCRIPTION-DNA KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.TAN,T.J.RICHMOND REVDAT 4 02-AUG-23 1MNM 1 REMARK REVDAT 3 15-FEB-17 1MNM 1 AUTHOR SOURCE VERSN REVDAT 2 24-FEB-09 1MNM 1 VERSN REVDAT 1 18-MAR-98 1MNM 0 JRNL AUTH S.TAN,T.J.RICHMOND JRNL TITL CRYSTAL STRUCTURE OF THE YEAST MATALPHA2/MCM1/DNA TERNARY JRNL TITL 2 COMPLEX. JRNL REF NATURE V. 391 660 1998 JRNL REFN ISSN 0028-0836 JRNL PMID 9490409 JRNL DOI 10.1038/35563 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.PELLEGRINI,S.TAN,T.J.RICHMOND REMARK 1 TITL STRUCTURE OF SERUM RESPONSE FACTOR CORE BOUND TO DNA REMARK 1 REF NATURE V. 376 490 1995 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.WOLBERGER,A.K.VERSHON,B.LIU,A.D.JOHNSON,C.O.PABO REMARK 1 TITL CRYSTAL STRUCTURE OF A MAT ALPHA 2 HOMEODOMAIN-OPERATOR REMARK 1 TITL 2 COMPLEX SUGGESTS A GENERAL MODEL FOR HOMEODOMAIN-DNA REMARK 1 TITL 3 INTERACTIONS REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 67 517 1991 REMARK 1 REFN ISSN 0092-8674 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.843 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 3670598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1846 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.700 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5718 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 313 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2544 REMARK 3 NUCLEIC ACID ATOMS : 1060 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.65000 REMARK 3 B22 (A**2) : -2.10000 REMARK 3 B33 (A**2) : -0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM SIGMAA (A) : 0.47 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.43 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.210 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.230 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.060 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.590 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.430 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : DNA-RNA.PARAM REMARK 3 PARAMETER FILE 3 : PARAM19.SOL REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED IN X-PLOR. TNT REMARK 3 REFINEMENT PACKAGE ALSO USED. REMARK 4 REMARK 4 1MNM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000175091. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : SEP-96 REMARK 200 TEMPERATURE (KELVIN) : 110.00 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35613 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 0.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1SRS AND PDB ENTRY 1APL REMARK 200 REMARK 200 REMARK: ADDITIONAL LOW RESOLUTION DATA SET COLLECTED USING REMARK 200 ROTATING ANODE GENERATOR. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.31000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.35000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.27500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.35000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.31000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.27500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 ILE A 4 REMARK 465 GLU A 5 REMARK 465 GLU A 6 REMARK 465 GLY A 7 REMARK 465 THR A 8 REMARK 465 PRO A 9 REMARK 465 THR A 10 REMARK 465 ASN A 11 REMARK 465 ASN A 12 REMARK 465 GLY A 13 REMARK 465 GLN A 14 REMARK 465 GLU A 100 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 ILE B 4 REMARK 465 GLU B 5 REMARK 465 GLU B 6 REMARK 465 GLY B 7 REMARK 465 THR B 8 REMARK 465 PRO B 9 REMARK 465 THR B 10 REMARK 465 ASN B 11 REMARK 465 ASN B 12 REMARK 465 GLY B 13 REMARK 465 GLN B 14 REMARK 465 GLN B 15 REMARK 465 LYS B 16 REMARK 465 GLU B 17 REMARK 465 ASP B 99 REMARK 465 GLU B 100 REMARK 465 GLN C 103 REMARK 465 LEU C 104 REMARK 465 THR C 105 REMARK 465 GLN C 106 REMARK 465 LYS C 107 REMARK 465 ASN C 108 REMARK 465 LYS C 109 REMARK 465 SER C 110 REMARK 465 ALA C 111 REMARK 465 ASP C 112 REMARK 465 GLN D 103 REMARK 465 LEU D 104 REMARK 465 THR D 105 REMARK 465 GLN D 106 REMARK 465 LYS D 107 REMARK 465 ASN D 108 REMARK 465 LYS D 109 REMARK 465 SER D 110 REMARK 465 ALA D 111 REMARK 465 ASP D 112 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 GLN A 84 CG CD OE1 NE2 REMARK 470 ARG B 19 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 20 CG CD CE NZ REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 LYS B 24 CG CD CE NZ REMARK 470 ARG B 31 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 91 CG CD OE1 NE2 REMARK 470 ASP B 98 CG OD1 OD2 REMARK 470 LYS C 126 CG CD CE NZ REMARK 470 LYS C 129 CG CD CE NZ REMARK 470 LYS C 138 CG CD CE NZ REMARK 470 GLU C 139 CG CD OE1 OE2 REMARK 470 ARG C 142 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 150 CG CD CE NZ REMARK 470 LYS C 160 CG CD CE NZ REMARK 470 LYS C 167 CG CD CE NZ REMARK 470 LYS C 188 CG CD CE NZ REMARK 470 LYS D 138 CG CD CE NZ REMARK 470 GLU D 139 CG CD OE1 OE2 REMARK 470 LYS D 150 CG CD CE NZ REMARK 470 LYS D 160 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 155 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 16 113.55 68.63 REMARK 500 ILE B 23 75.32 -101.12 REMARK 500 PRO B 75 -63.50 -28.46 REMARK 500 LEU B 94 35.05 -79.29 REMARK 500 ALA B 96 -171.36 172.00 REMARK 500 ASN C 151 36.61 -85.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC F 27 0.09 SIDE CHAIN REMARK 500 DG F 47 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1MNM A 1 100 UNP P11746 MCM1_YEAST 1 100 DBREF 1MNM B 1 100 UNP P11746 MCM1_YEAST 1 100 DBREF 1MNM C 103 189 UNP Q6B2C0 MTAL2_YEAST 103 189 DBREF 1MNM D 103 189 UNP Q6B2C0 MTAL2_YEAST 103 189 DBREF 1MNM E 1 26 PDB 1MNM 1MNM 1 26 DBREF 1MNM F 27 52 PDB 1MNM 1MNM 27 52 SEQRES 1 E 26 DG DA DT DT DA DC DC DT DA DA DT DA DG SEQRES 2 E 26 DG DG DA DA DA DT DT DT DA DC DA DC DG SEQRES 1 F 26 DC DC DG DT DG DT DA DA DA DT DT DT DC SEQRES 2 F 26 DC DC DT DA DT DT DA DG DG DT DA DA DT SEQRES 1 A 100 MET SER ASP ILE GLU GLU GLY THR PRO THR ASN ASN GLY SEQRES 2 A 100 GLN GLN LYS GLU ARG ARG LYS ILE GLU ILE LYS PHE ILE SEQRES 3 A 100 GLU ASN LYS THR ARG ARG HIS VAL THR PHE SER LYS ARG SEQRES 4 A 100 LYS HIS GLY ILE MET LYS LYS ALA PHE GLU LEU SER VAL SEQRES 5 A 100 LEU THR GLY THR GLN VAL LEU LEU LEU VAL VAL SER GLU SEQRES 6 A 100 THR GLY LEU VAL TYR THR PHE SER THR PRO LYS PHE GLU SEQRES 7 A 100 PRO ILE VAL THR GLN GLN GLU GLY ARG ASN LEU ILE GLN SEQRES 8 A 100 ALA CYS LEU ASN ALA PRO ASP ASP GLU SEQRES 1 B 100 MET SER ASP ILE GLU GLU GLY THR PRO THR ASN ASN GLY SEQRES 2 B 100 GLN GLN LYS GLU ARG ARG LYS ILE GLU ILE LYS PHE ILE SEQRES 3 B 100 GLU ASN LYS THR ARG ARG HIS VAL THR PHE SER LYS ARG SEQRES 4 B 100 LYS HIS GLY ILE MET LYS LYS ALA PHE GLU LEU SER VAL SEQRES 5 B 100 LEU THR GLY THR GLN VAL LEU LEU LEU VAL VAL SER GLU SEQRES 6 B 100 THR GLY LEU VAL TYR THR PHE SER THR PRO LYS PHE GLU SEQRES 7 B 100 PRO ILE VAL THR GLN GLN GLU GLY ARG ASN LEU ILE GLN SEQRES 8 B 100 ALA CYS LEU ASN ALA PRO ASP ASP GLU SEQRES 1 C 87 GLN LEU THR GLN LYS ASN LYS SER ALA ASP GLY LEU VAL SEQRES 2 C 87 PHE ASN VAL VAL THR GLN ASP MET ILE ASN LYS SER THR SEQRES 3 C 87 LYS PRO TYR ARG GLY HIS ARG PHE THR LYS GLU ASN VAL SEQRES 4 C 87 ARG ILE LEU GLU SER TRP PHE ALA LYS ASN ILE GLU ASN SEQRES 5 C 87 PRO TYR LEU ASP THR LYS GLY LEU GLU ASN LEU MET LYS SEQRES 6 C 87 ASN THR SER LEU SER ARG ILE GLN ILE LYS ASN TRP VAL SEQRES 7 C 87 SER ASN ARG ARG ARG LYS GLU LYS THR SEQRES 1 D 87 GLN LEU THR GLN LYS ASN LYS SER ALA ASP GLY LEU VAL SEQRES 2 D 87 PHE ASN VAL VAL THR GLN ASP MET ILE ASN LYS SER THR SEQRES 3 D 87 LYS PRO TYR ARG GLY HIS ARG PHE THR LYS GLU ASN VAL SEQRES 4 D 87 ARG ILE LEU GLU SER TRP PHE ALA LYS ASN ILE GLU ASN SEQRES 5 D 87 PRO TYR LEU ASP THR LYS GLY LEU GLU ASN LEU MET LYS SEQRES 6 D 87 ASN THR SER LEU SER ARG ILE GLN ILE LYS ASN TRP VAL SEQRES 7 D 87 SER ASN ARG ARG ARG LYS GLU LYS THR FORMUL 7 HOH *53(H2 O) HELIX 1 1 LYS A 29 THR A 54 1 26 HELIX 2 2 PRO A 75 THR A 82 1 8 HELIX 3 3 GLN A 84 ASN A 95 1 12 HELIX 4 4 LYS B 29 THR B 54 1 26 HELIX 5 5 PRO B 75 THR B 82 5 8 HELIX 6 6 GLN B 84 ASN B 95 1 12 HELIX 7 7 LYS C 138 ILE C 152 1 15 HELIX 8 8 THR C 159 THR C 169 1 11 HELIX 9 9 ARG C 173 GLU C 187 1 15 HELIX 10 10 GLN D 121 THR D 128 1 8 HELIX 11 12 LYS D 138 ILE D 152 1 15 HELIX 12 14 THR D 159 THR D 169 1 11 HELIX 13 15 ARG D 173 GLU D 187 1 15 SHEET 1 A 6 VAL A 69 SER A 73 0 SHEET 2 A 6 GLN A 57 VAL A 63 -1 SHEET 3 A 6 GLN B 57 VAL B 63 -1 SHEET 4 A 6 VAL B 69 SER B 73 -1 SHEET 5 A 6 VAL C 115 THR C 120 1 SHEET 6 A 6 ASN C 125 SER C 127 -1 SHEET 1 B 1 VAL D 115 THR D 120 0 CRYST1 70.620 72.550 150.700 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014160 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013784 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006636 0.00000