PDB Short entry for 1MOI HEADER TRANSFERASE 09-SEP-02 1MOI TITLE THEORETICAL MODEL OF HUMAN GLUTAMINYL CYCLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMINYL CYCLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLUTAMINYL-PEPTIDE CYCLOTRANSFERASE; COMPND 5 EC: 2.3.2.5 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN KEYWDS TRANSFERASE EXPDTA THEORETICAL MODEL AUTHOR R.E.BOOTH,S.C.LOVELL,S.A.MISQUITA,R.C.BATEMAN REVDAT 1 23-SEP-03 1MOI 0 JRNL AUTH R.E.BOOTH,S.C.LOVELL,S.A.MISQUITA,R.C.BATEMAN JRNL TITL HETEROLOGOUS EXPRESSION, AFFINITY PURIFICATION, JRNL TITL 2 AND THEORETICAL MODELING OF HUMAN GLUTAMINYL JRNL TITL 3 CYCLASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MOI COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-SEP-2002. REMARK 100 THE RCSB ID CODE IS RCSB017056. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: HOMOLOGY MODELING. MODELING PROGRAM: MODELER; PROGRAM REMARK 220 AUTHORS: A. SALI. THIS MODEL IS BASED ON THE COORDINATES REMARK 220 OF 1AMP, 1XJO AND 1CG2 REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 GLY A 4 REMARK 465 ARG A 5 REMARK 465 HIS A 6 REMARK 465 ARG A 7 REMARK 465 ARG A 8 REMARK 465 VAL A 9 REMARK 465 VAL A 10 REMARK 465 GLY A 11 REMARK 465 THR A 12 REMARK 465 LEU A 13 REMARK 465 HIS A 14 REMARK 465 LEU A 15 REMARK 465 LEU A 16 REMARK 465 LEU A 17 REMARK 465 LEU A 18 REMARK 465 VAL A 19 REMARK 465 ALA A 20 REMARK 465 ALA A 21 REMARK 465 LEU A 22 REMARK 465 PRO A 23 REMARK 465 TRP A 24 REMARK 465 ALA A 25 REMARK 465 SER A 26 REMARK 465 ARG A 27 REMARK 465 GLY A 28 REMARK 465 VAL A 29 REMARK 465 SER A 30 REMARK 465 PRO A 31 REMARK 465 SER A 32 REMARK 465 ALA A 33 REMARK 465 SER A 34 REMARK 465 ALA A 35 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 OE1 GLU A 58 O ASP A 340 1.76 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 305 CA ASP A 305 C 0.303 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 250 C - N - CA ANGL. DEV. = 25.2 DEGREES REMARK 500 ASP A 305 CA - C - N ANGL. DEV. =-15.2 DEGREES REMARK 500 SER A 323 CB - CA - C ANGL. DEV. =-17.3 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 146 -169.95 110.53 REMARK 500 VAL A 184 -36.40 70.70 REMARK 500 LEU A 238 -69.34 60.22 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 176 LYS A 177 -140.65 REMARK 500 GLN A 237 LEU A 238 -143.55 REMARK 500 PHE A 261 PRO A 262 142.51 REMARK 500 PRO A 262 ASN A 263 62.98 REMARK 500 ASP A 305 ASP A 306 -146.18 DBREF 1MOI A 1 361 UNP Q16769 QPCT_HUMAN 1 361 SEQRES 1 A 361 MET ALA GLY GLY ARG HIS ARG ARG VAL VAL GLY THR LEU SEQRES 2 A 361 HIS LEU LEU LEU LEU VAL ALA ALA LEU PRO TRP ALA SER SEQRES 3 A 361 ARG GLY VAL SER PRO SER ALA SER ALA TRP PRO GLU GLU SEQRES 4 A 361 LYS ASN TYR HIS GLN PRO ALA ILE LEU ASN SER SER ALA SEQRES 5 A 361 LEU ARG GLN ILE ALA GLU GLY THR SER ILE SER GLU MET SEQRES 6 A 361 TRP GLN ASN ASP LEU GLN PRO LEU LEU ILE GLU ARG TYR SEQRES 7 A 361 PRO GLY SER PRO GLY SER TYR ALA ALA ARG GLN HIS ILE SEQRES 8 A 361 MET GLN ARG ILE GLN ARG LEU GLN ALA ASP TRP VAL LEU SEQRES 9 A 361 GLU ILE ASP THR PHE LEU SER GLN THR PRO TYR GLY TYR SEQRES 10 A 361 ARG SER PHE SER ASN ILE ILE SER THR LEU ASN PRO THR SEQRES 11 A 361 ALA LYS ARG HIS LEU VAL LEU ALA CYS HIS TYR ASP SER SEQRES 12 A 361 LYS TYR PHE SER HIS TRP ASN ASN ARG VAL PHE VAL GLY SEQRES 13 A 361 ALA THR ASP SER ALA VAL PRO CYS ALA MET MET LEU GLU SEQRES 14 A 361 LEU ALA ARG ALA LEU ASP LYS LYS LEU LEU SER LEU LYS SEQRES 15 A 361 THR VAL SER ASP SER LYS PRO ASP LEU SER LEU GLN LEU SEQRES 16 A 361 ILE PHE PHE ASP GLY GLU GLU ALA PHE LEU HIS TRP SER SEQRES 17 A 361 PRO GLN ASP SER LEU TYR GLY SER ARG HIS LEU ALA ALA SEQRES 18 A 361 LYS MET ALA SER THR PRO HIS PRO PRO GLY ALA ARG GLY SEQRES 19 A 361 THR SER GLN LEU HIS GLY MET ASP LEU LEU VAL LEU LEU SEQRES 20 A 361 ASP LEU ILE GLY ALA PRO ASN PRO THR PHE PRO ASN PHE SEQRES 21 A 361 PHE PRO ASN SER ALA ARG TRP PHE GLU ARG LEU GLN ALA SEQRES 22 A 361 ILE GLU HIS GLU LEU HIS GLU LEU GLY LEU LEU LYS ASP SEQRES 23 A 361 HIS SER LEU GLU GLY ARG TYR PHE GLN ASN TYR SER TYR SEQRES 24 A 361 GLY GLY VAL ILE GLN ASP ASP HIS ILE PRO PHE LEU ARG SEQRES 25 A 361 ARG GLY VAL PRO VAL LEU HIS LEU ILE PRO SER PRO PHE SEQRES 26 A 361 PRO GLU VAL TRP HIS THR MET ASP ASP ASN GLU GLU ASN SEQRES 27 A 361 LEU ASP GLU SER THR ILE ASP ASN LEU ASN LYS ILE LEU SEQRES 28 A 361 GLN VAL PHE VAL LEU GLU TYR LEU HIS LEU HELIX 1 1 PRO A 45 ARG A 54 1 10 HELIX 2 2 ALA A 57 LEU A 70 1 14 HELIX 3 3 GLN A 71 ILE A 75 5 5 HELIX 4 4 GLY A 80 TRP A 102 1 23 HELIX 5 5 SER A 160 LYS A 177 1 18 HELIX 6 6 SER A 216 THR A 226 1 11 HELIX 7 7 ARG A 270 SER A 288 1 19 HELIX 8 8 ASP A 306 GLY A 314 1 9 HELIX 9 9 GLU A 341 HIS A 360 1 20 SHEET 1 A 6 ILE A 106 TYR A 115 0 SHEET 2 A 6 ARG A 118 LEU A 127 -1 O ILE A 124 N PHE A 109 SHEET 3 A 6 SER A 192 PHE A 198 -1 O LEU A 195 N SER A 125 SHEET 4 A 6 HIS A 134 HIS A 140 1 N LEU A 135 O GLN A 194 SHEET 5 A 6 MET A 241 LEU A 247 1 O ASP A 242 N HIS A 134 SHEET 6 A 6 VAL A 317 LEU A 320 1 O LEU A 318 N LEU A 246 SHEET 1 B 2 ASN A 259 PHE A 261 0 SHEET 2 B 2 TYR A 293 GLN A 295 1 O PHE A 294 N ASN A 259 SSBOND 1 CYS A 139 CYS A 164 CISPEP 1 ASP A 159 SER A 160 0 -5.58 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000