PDB Short entry for 1MPV
HEADER    PROTEIN BINDING                         12-SEP-02   1MPV              
TITLE     STRUCTURE OF BHPBR3, THE BAFF-BINDING LOOP OF BR3 EMBEDDED            
TITLE    2 IN A BETA-HAIRPIN PEPTIDE                                            
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: BLYS RECEPTOR 3;                                           
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: BR3 LOOP (RESIDUES 26-31);                                 
COMPND   5 SYNONYM: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER           
COMPND   6 13C, B CELL-ACTIVATING FACTOR RECEPTOR,  BAFF RECEPTOR,              
COMPND   7 BAFF-R, BLYS RECEPTOR 3;                                             
COMPND   8 ENGINEERED: YES;                                                     
COMPND   9 OTHER_DETAILS: THE RECEPTOR LOOP IS EMBEDDED WITHIN A BETA-          
COMPND  10 HAIRPIN (BHP) SCAFFOLD                                               
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES;                                                      
SOURCE   3 OTHER_DETAILS: THE PEPTIDE WAS SYNTHESIZED CHEMICALLY WITH           
SOURCE   4 ACETYLATED N-TERMINUS AND AMIDATED C-TERMINUS                        
KEYWDS    BETA-HAIRPIN, PROTEIN BINDING                                         
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    N.KAYAGAKI,M.YAN,D.SESHASAYEE,H.WANG,W.LEE,D.M.FRENCH,                
AUTHOR   2 I.S.GREWAL,A.G.COCHRAN,N.C.GORDON,J.YIN,M.A.STAROVASNIK,             
AUTHOR   3 V.M.DIXIT                                                            
REVDAT   3   24-FEB-09 1MPV    1       VERSN                                    
REVDAT   2   01-APR-03 1MPV    1       JRNL                                     
REVDAT   1   30-OCT-02 1MPV    0                                                
JRNL        AUTH   N.KAYAGAKI,M.YAN,D.SESHASAYEE,H.WANG,W.LEE,                  
JRNL        AUTH 2 D.M.FRENCH,I.S.GREWAL,A.G.COCHRAN,N.C.GORDON,J.YIN,          
JRNL        AUTH 3 M.A.STAROVASNIK,V.M.DIXIT                                    
JRNL        TITL   BAFF/BLYS RECEPTOR 3 BINDS THE B CELL SURVIVAL               
JRNL        TITL 2 FACTOR BAFF LIGAND THROUGH A DISCRETE SURFACE LOOP           
JRNL        TITL 3 AND PROMOTES PROCESSING OF NF-KAPPAB2.                       
JRNL        REF    IMMUNITY                      V.  17   515 2002              
JRNL        REFN                   ISSN 1074-7613                               
JRNL        PMID   12387744                                                     
JRNL        DOI    10.1016/S1074-7613(02)00425-9                                
REMARK   1                                                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : DISCOVER 98.0                                        
REMARK   3   AUTHORS     : ACCELRYS                                             
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: COMPLETE 1H RESONANCE ASSIGNMENTS         
REMARK   3  WERE OBTAINED USING STANDARD 2D HOMONUCLEAR NMR METHODS.            
REMARK   3  DISTANCE RESTRAINTS WERE DERIVED FROM ANALYSIS OF A 2D NOESY        
REMARK   3  SPECTRUM (250MS MIXING TIME); HN-HA COUPLING CONSTANTS WERE         
REMARK   3  OBTAINED FROM ANALYSIS OF A DQF-COSY SPECTRUM ACQUIRED IN           
REMARK   3  WATER; AND HAHB VALUES WERE OBTAINED FROM ANALYSIS OF A COSY-       
REMARK   3  35 SPECTRUM ACQUIRED IN D2O. STRUCTURES WERE CALCULATED FROM A      
REMARK   3  TOTAL OF 119 NOE-DERIVED (INCLUDING 46 LONG-RANGE) DISTANCE         
REMARK   3  RESTRAINTS AND 16 DIHEDRAL ANGLE RESTRAINTS. STRUCTURES             
REMARK   3  SATISFY THE EXPERIMENTAL DATA VERY WELL WITH NO DISTANCE OR         
REMARK   3  DIHEDRAL ANGLE VIOLATIONS GREATER THAN 0.1 ANGSTROM OR 1            
REMARK   3  DEGREE, RESPECTIVELY.                                               
REMARK   4                                                                      
REMARK   4 1MPV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-02.                  
REMARK 100 THE RCSB ID CODE IS RCSB017081.                                      
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 293                                
REMARK 210  PH                             : 4.5                                
REMARK 210  IONIC STRENGTH                 : NO ADDED SALT                      
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 2.9 MM BHPBR3 PEPTIDE; 2.9 MM      
REMARK 210                                   BHPBR3 PEPTIDE                     
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D NOESY, 2D TOCSY, DQF-COSY,      
REMARK 210                                   COSY-35                            
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ                            
REMARK 210  SPECTROMETER MODEL             : DRX                                
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : XWINNMR 1.37.4.2, FELIX 98.0,      
REMARK 210                                   DGII 98.0                          
REMARK 210   METHOD USED                   : HYBRID DISTANCE GEOMETRY/          
REMARK 210                                   SIMULATED ANNEALING FOLLOWED       
REMARK 210                                   BY RESTRAINED MOLECULAR            
REMARK 210                                   DYNAMICS.                          
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 80                                 
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LEAST          
REMARK 210                                   RESTRAINT VIOLATIONS               
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 ARG A  30       58.17     85.86                                   
REMARK 500  2 ARG A  30       60.69     74.13                                   
REMARK 500  3 ARG A  30       58.92     75.75                                   
REMARK 500  4 ARG A  30       56.28     87.63                                   
REMARK 500  5 ARG A  30       59.91     70.80                                   
REMARK 500  6 ARG A  30       59.43     71.05                                   
REMARK 500  7 ARG A  30       60.23     73.48                                   
REMARK 500  8 ARG A  30       51.71     90.63                                   
REMARK 500  9 ARG A  30       62.74     68.58                                   
REMARK 500 10 ARG A  30       60.57     74.03                                   
REMARK 500 11 ARG A  30       58.08     73.92                                   
REMARK 500 12 ARG A  30       60.15     74.03                                   
REMARK 500 13 ARG A  30       59.79     75.10                                   
REMARK 500 14 ARG A  30       52.46     83.37                                   
REMARK 500 15 ARG A  30       52.40    103.41                                   
REMARK 500 16 ARG A  30       55.93     84.88                                   
REMARK 500 17 ARG A  30       60.16     73.51                                   
REMARK 500 18 ARG A  30       60.80     65.95                                   
REMARK 500 19 ARG A  30       52.08    106.57                                   
REMARK 500 20 ARG A  30       60.45     74.72                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACE A 22                  
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 A 35                  
REMARK 999                                                                      
REMARK 999 SEQUENCE                                                             
REMARK 999 THIS IS PART OF AN OPTIMIZED BETA-HAIRPIN                            
REMARK 999 SCAFFOLD, (SEE RUSSELL, BLANDL, SKELTON, &                           
REMARK 999 COCHRAN, "STABILITY OF CYCLIC BETA-HAIRPINS:                         
REMARK 999 ASYMMETRIC CONTRIBUTIONS FROM SIDE CHAINS OF                         
REMARK 999 A HYDROGEN-BONDED CROSS-STRAND RESIDUE PAIR",                        
REMARK 999 J. AMER. CHEM. SOC., IN PRESS.)                                      
DBREF  1MPV A   26    31  UNP    Q96RJ3   TR13C_HUMAN     26     31             
SEQADV 1MPV CYS A   23  UNP  Q96RJ3              SEE REMARK 999                 
SEQADV 1MPV HIS A   24  UNP  Q96RJ3              SEE REMARK 999                 
SEQADV 1MPV TRP A   25  UNP  Q96RJ3              SEE REMARK 999                 
SEQADV 1MPV TRP A   32  UNP  Q96RJ3              SEE REMARK 999                 
SEQADV 1MPV VAL A   33  UNP  Q96RJ3              SEE REMARK 999                 
SEQADV 1MPV CYS A   34  UNP  Q96RJ3              SEE REMARK 999                 
SEQRES   1 A   14  ACE CYS HIS TRP ASP LEU LEU VAL ARG HIS TRP VAL CYS          
SEQRES   2 A   14  NH2                                                          
HET    ACE  A  22       6                                                       
HET    NH2  A  35       3                                                       
HETNAM     ACE ACETYL GROUP                                                     
HETNAM     NH2 AMINO GROUP                                                      
FORMUL   1  ACE    C2 H4 O                                                      
FORMUL   1  NH2    H2 N                                                         
SHEET    1   A 2 HIS A  24  ASP A  26  0                                        
SHEET    2   A 2 HIS A  31  VAL A  33 -1  O  VAL A  33   N  HIS A  24           
SSBOND   1 CYS A   23    CYS A   34                          1555   1555  2.06  
LINK         C   ACE A  22                 N   CYS A  23     1555   1555  1.34  
LINK         N   NH2 A  35                 C   CYS A  34     1555   1555  1.34  
SITE     1 AC1  2 HIS A  24  VAL A  33                                          
SITE     1 AC2  1 CYS A  34                                                     
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000