PDB Short entry for 1MSW HEADER TRANSCRIPTION/DNA/RNA 19-SEP-02 1MSW TITLE STRUCTURAL BASIS FOR THE TRANSITION FROM INITIATION TO ELONGATION TITLE 2 TRANSCRIPTION IN T7 RNA POLYMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TEMPLATE DNA; COMPND 3 CHAIN: T; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: 20-MER; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NON-TEMPLATE DNA; COMPND 8 CHAIN: N; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: 17-MER; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: RNA MESSAGE; COMPND 13 CHAIN: R; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA-DIRECTED RNA POLYMERASE; COMPND 17 CHAIN: D; COMPND 18 SYNONYM: T7 RNA POLYMERASE; BACTERIOPHAGE T7 RNA POLYMERASE; COMPND 19 EC: 2.7.7.6; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN BACTERIOPHAGE T7; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN BACTERIOPHAGE T7; SOURCE 7 MOL_ID: 3; SOURCE 8 SYNTHETIC: YES; SOURCE 9 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN BACTERIOPHAGE T7; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T7; SOURCE 12 ORGANISM_TAXID: 10760; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PAR1219 KEYWDS T7RNAP ELONGATION COMPLEX, TRANSCRIPTION-DNA-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.W.YIN,T.A.STEITZ REVDAT 3 14-FEB-24 1MSW 1 REMARK REVDAT 2 24-FEB-09 1MSW 1 VERSN REVDAT 1 15-NOV-02 1MSW 0 JRNL AUTH Y.W.YIN,T.A.STEITZ JRNL TITL STRUCTURAL BASIS FOR THE TRANSITION FROM INITIATION TO JRNL TITL 2 ELONGATION TRANSCRIPTION IN T7 RNA POLYMERASE JRNL REF SCIENCE V. 298 1387 2002 JRNL REFN ISSN 0036-8075 JRNL PMID 12242451 JRNL DOI 10.1126/SCIENCE.1077464 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4598334.230 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.0 REMARK 3 NUMBER OF REFLECTIONS : 61181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4894 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 55.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6996 REMARK 3 BIN R VALUE (WORKING SET) : 0.4820 REMARK 3 BIN FREE R VALUE : 0.4750 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 640 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.059 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6802 REMARK 3 NUCLEIC ACID ATOMS : 964 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -16.03000 REMARK 3 B22 (A**2) : 33.00000 REMARK 3 B33 (A**2) : -16.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.77 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.290 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.390 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.380 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.930 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.030 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 32.63 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MSW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-02. REMARK 100 THE DEPOSITION ID IS D_1000017155. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; NSLS REMARK 200 BEAMLINE : 19-ID; X25 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790; 1.050 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61181 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, LISO4, MG(OAC)2, TRIS-HCL, REMARK 280 PH 7.0, VAPOR DIFFUSION, HANGING DROP AT 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.80000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.80000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 71.45500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.73000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 71.45500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.73000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.80000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 71.45500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 72.73000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.80000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 71.45500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 72.73000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, N, R, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 1 REMARK 465 ASN D 233 REMARK 465 ALA D 234 REMARK 465 GLY D 235 REMARK 465 VAL D 236 REMARK 465 VAL D 237 REMARK 465 GLY D 238 REMARK 465 GLN D 239 REMARK 465 ASP D 240 REMARK 465 PRO D 364 REMARK 465 GLU D 365 REMARK 465 ASP D 366 REMARK 465 ILE D 367 REMARK 465 ASP D 368 REMARK 465 MET D 369 REMARK 465 ASN D 370 REMARK 465 PRO D 371 REMARK 465 GLU D 372 REMARK 465 ALA D 373 REMARK 465 LEU D 374 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU D 252 CB CG CD OE1 OE2 REMARK 470 ARG D 291 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG HIS D 300 O HOH D 898 0.48 REMARK 500 CG2 THR D 763 O HOH D 962 0.76 REMARK 500 ND1 HIS D 300 O HOH D 898 1.03 REMARK 500 CD2 HIS D 300 O HOH D 898 1.28 REMARK 500 NZ LYS D 407 O HOH D 1035 1.46 REMARK 500 CE1 HIS D 300 O HOH D 898 1.73 REMARK 500 NE2 HIS D 300 O HOH D 898 1.82 REMARK 500 CB HIS D 300 O HOH D 898 1.94 REMARK 500 OE1 GLN D 505 O HOH D 1046 2.00 REMARK 500 N VAL D 795 O HOH D 892 2.00 REMARK 500 O LEU D 561 O HOH D 1014 2.01 REMARK 500 C3' DT T 111 O HOH T 132 2.02 REMARK 500 O GLY D 716 O HOH D 1013 2.02 REMARK 500 N LEU D 360 O HOH D 917 2.02 REMARK 500 O ALA D 129 O HOH D 983 2.04 REMARK 500 O LEU D 791 O HOH D 892 2.04 REMARK 500 O THR D 688 O HOH D 1007 2.04 REMARK 500 O LYS D 302 N ALA D 304 2.04 REMARK 500 N3 G R 10 O HOH R 46 2.05 REMARK 500 OD2 ASP D 820 O HOH D 989 2.05 REMARK 500 O2 DC T 128 O HOH T 134 2.05 REMARK 500 N ILE D 4 O HOH D 985 2.05 REMARK 500 O LYS D 454 O HOH D 951 2.06 REMARK 500 CB TRP D 344 O HOH D 1015 2.06 REMARK 500 C ASN D 289 O HOH D 960 2.07 REMARK 500 O ILE D 452 O HOH D 980 2.07 REMARK 500 CE LYS D 276 O HOH D 1032 2.07 REMARK 500 N ILE D 217 O HOH D 1005 2.08 REMARK 500 CA ALA D 428 O HOH D 944 2.08 REMARK 500 O5' G R 5 O HOH R 99 2.09 REMARK 500 OE1 GLN D 107 O HOH D 1011 2.09 REMARK 500 O GLY D 538 O HOH D 984 2.09 REMARK 500 C ASN D 419 O HOH D 957 2.10 REMARK 500 N THR D 118 O HOH D 955 2.10 REMARK 500 OE2 GLU D 146 O HOH D 971 2.10 REMARK 500 N LYS D 441 O HOH D 967 2.11 REMARK 500 O ASP D 859 O HOH D 988 2.11 REMARK 500 O PHE D 546 O HOH D 909 2.11 REMARK 500 CB LEU D 360 O HOH D 968 2.12 REMARK 500 OG SER D 209 O HOH D 971 2.12 REMARK 500 O LYS D 95 O HOH D 902 2.12 REMARK 500 O PHE D 807 O HOH D 941 2.13 REMARK 500 O GLY D 803 O HOH D 966 2.13 REMARK 500 O4' DT T 119 O HOH T 139 2.13 REMARK 500 O HOH D 989 O HOH D 1008 2.13 REMARK 500 OD2 ASP D 537 O HOH D 984 2.13 REMARK 500 CA GLY D 664 O HOH D 1031 2.14 REMARK 500 OG1 THR D 500 O HOH D 1009 2.15 REMARK 500 CZ PHE D 733 O HOH D 1002 2.15 REMARK 500 N ASN D 869 O HOH D 893 2.15 REMARK 500 REMARK 500 THIS ENTRY HAS 62 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT T 119 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC T 118 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG T 117 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC T 116 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC T 115 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG T 114 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 PRO D 353 C - N - CD ANGL. DEV. = -13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU D 15 76.31 -69.76 REMARK 500 LEU D 16 148.70 -22.27 REMARK 500 ASP D 26 -38.37 76.99 REMARK 500 GLU D 30 -54.67 -23.65 REMARK 500 ALA D 61 3.89 -177.45 REMARK 500 LEU D 106 1.44 -69.04 REMARK 500 SER D 128 -89.64 -82.73 REMARK 500 ASN D 131 42.40 -77.93 REMARK 500 THR D 132 39.65 -74.63 REMARK 500 VAL D 134 -14.88 -49.30 REMARK 500 ILE D 154 14.95 -68.28 REMARK 500 ARG D 155 -52.46 -131.31 REMARK 500 GLU D 158 86.97 -32.48 REMARK 500 ALA D 159 89.11 -169.65 REMARK 500 LYS D 163 11.70 -67.90 REMARK 500 LYS D 164 -65.73 -128.83 REMARK 500 VAL D 166 -6.35 -141.53 REMARK 500 HIS D 176 -35.75 -36.14 REMARK 500 LEU D 196 31.02 -73.28 REMARK 500 SER D 203 164.00 -40.64 REMARK 500 HIS D 205 103.55 81.74 REMARK 500 LYS D 206 -28.81 -31.44 REMARK 500 SER D 209 14.19 -59.94 REMARK 500 ARG D 292 74.64 -100.69 REMARK 500 SER D 301 102.81 72.33 REMARK 500 LYS D 302 -110.90 -11.21 REMARK 500 LYS D 303 -43.34 16.53 REMARK 500 PRO D 353 170.51 28.04 REMARK 500 GLU D 358 -141.70 -70.05 REMARK 500 ALA D 376 -105.04 79.83 REMARK 500 ALA D 381 -61.13 -109.63 REMARK 500 ALA D 383 -74.98 -68.66 REMARK 500 GLN D 404 -25.94 -172.18 REMARK 500 THR D 500 14.91 57.14 REMARK 500 CYS D 540 69.10 74.09 REMARK 500 ALA D 584 -16.57 -47.28 REMARK 500 ASN D 588 23.26 160.35 REMARK 500 ASN D 592 175.22 -45.99 REMARK 500 VAL D 594 29.95 -142.26 REMARK 500 VAL D 595 134.89 64.73 REMARK 500 THR D 596 -132.98 -117.96 REMARK 500 ASP D 599 -82.01 -86.18 REMARK 500 ASN D 601 47.00 -92.15 REMARK 500 THR D 602 -80.46 55.65 REMARK 500 SER D 606 -148.24 173.77 REMARK 500 GLU D 607 129.26 -173.48 REMARK 500 LYS D 608 -152.38 -125.89 REMARK 500 VAL D 609 76.59 -111.34 REMARK 500 LYS D 610 95.81 -64.97 REMARK 500 THR D 626 -169.21 -113.30 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA T 121 0.06 SIDE CHAIN REMARK 500 DT T 119 0.09 SIDE CHAIN REMARK 500 DC T 118 0.10 SIDE CHAIN REMARK 500 DG T 117 0.12 SIDE CHAIN REMARK 500 DC T 116 0.10 SIDE CHAIN REMARK 500 DC T 115 0.07 SIDE CHAIN REMARK 500 DG T 114 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1MSW D 1 883 UNP P00573 RPOL_BPT7 1 883 DBREF 1MSW T 130 111 PDB 1MSW 1MSW 130 111 DBREF 1MSW N 14 30 PDB 1MSW 1MSW 14 30 DBREF 1MSW R 10 1 PDB 1MSW 1MSW 10 1 SEQRES 1 T 20 DG DC DC DG DT DG DC DG DC DA DT DT DC SEQRES 2 T 20 DG DC DC DG DT DG DT SEQRES 1 N 17 DT DT DT DA DC DG DT DT DG DC DG DC DA SEQRES 2 N 17 DC DG DG DC SEQRES 1 R 10 G A C A C G G C G A SEQRES 1 D 883 MET ASN THR ILE ASN ILE ALA LYS ASN ASP PHE SER ASP SEQRES 2 D 883 ILE GLU LEU ALA ALA ILE PRO PHE ASN THR LEU ALA ASP SEQRES 3 D 883 HIS TYR GLY GLU ARG LEU ALA ARG GLU GLN LEU ALA LEU SEQRES 4 D 883 GLU HIS GLU SER TYR GLU MET GLY GLU ALA ARG PHE ARG SEQRES 5 D 883 LYS MET PHE GLU ARG GLN LEU LYS ALA GLY GLU VAL ALA SEQRES 6 D 883 ASP ASN ALA ALA ALA LYS PRO LEU ILE THR THR LEU LEU SEQRES 7 D 883 PRO LYS MET ILE ALA ARG ILE ASN ASP TRP PHE GLU GLU SEQRES 8 D 883 VAL LYS ALA LYS ARG GLY LYS ARG PRO THR ALA PHE GLN SEQRES 9 D 883 PHE LEU GLN GLU ILE LYS PRO GLU ALA VAL ALA TYR ILE SEQRES 10 D 883 THR ILE LYS THR THR LEU ALA CYS LEU THR SER ALA ASP SEQRES 11 D 883 ASN THR THR VAL GLN ALA VAL ALA SER ALA ILE GLY ARG SEQRES 12 D 883 ALA ILE GLU ASP GLU ALA ARG PHE GLY ARG ILE ARG ASP SEQRES 13 D 883 LEU GLU ALA LYS HIS PHE LYS LYS ASN VAL GLU GLU GLN SEQRES 14 D 883 LEU ASN LYS ARG VAL GLY HIS VAL TYR LYS LYS ALA PHE SEQRES 15 D 883 MET GLN VAL VAL GLU ALA ASP MET LEU SER LYS GLY LEU SEQRES 16 D 883 LEU GLY GLY GLU ALA TRP SER SER TRP HIS LYS GLU ASP SEQRES 17 D 883 SER ILE HIS VAL GLY VAL ARG CYS ILE GLU MET LEU ILE SEQRES 18 D 883 GLU SER THR GLY MET VAL SER LEU HIS ARG GLN ASN ALA SEQRES 19 D 883 GLY VAL VAL GLY GLN ASP SER GLU THR ILE GLU LEU ALA SEQRES 20 D 883 PRO GLU TYR ALA GLU ALA ILE ALA THR ARG ALA GLY ALA SEQRES 21 D 883 LEU ALA GLY ILE SER PRO MET PHE GLN PRO CYS VAL VAL SEQRES 22 D 883 PRO PRO LYS PRO TRP THR GLY ILE THR GLY GLY GLY TYR SEQRES 23 D 883 TRP ALA ASN GLY ARG ARG PRO LEU ALA LEU VAL ARG THR SEQRES 24 D 883 HIS SER LYS LYS ALA LEU MET ARG TYR GLU ASP VAL TYR SEQRES 25 D 883 MET PRO GLU VAL TYR LYS ALA ILE ASN ILE ALA GLN ASN SEQRES 26 D 883 THR ALA TRP LYS ILE ASN LYS LYS VAL LEU ALA VAL ALA SEQRES 27 D 883 ASN VAL ILE THR LYS TRP LYS HIS CYS PRO VAL GLU ASP SEQRES 28 D 883 ILE PRO ALA ILE GLU ARG GLU GLU LEU PRO MET LYS PRO SEQRES 29 D 883 GLU ASP ILE ASP MET ASN PRO GLU ALA LEU THR ALA TRP SEQRES 30 D 883 LYS ARG ALA ALA ALA ALA VAL TYR ARG LYS ASP LYS ALA SEQRES 31 D 883 ARG LYS SER ARG ARG ILE SER LEU GLU PHE MET LEU GLU SEQRES 32 D 883 GLN ALA ASN LYS PHE ALA ASN HIS LYS ALA ILE TRP PHE SEQRES 33 D 883 PRO TYR ASN MET ASP TRP ARG GLY ARG VAL TYR ALA VAL SEQRES 34 D 883 SER MET PHE ASN PRO GLN GLY ASN ASP MET THR LYS GLY SEQRES 35 D 883 LEU LEU THR LEU ALA LYS GLY LYS PRO ILE GLY LYS GLU SEQRES 36 D 883 GLY TYR TYR TRP LEU LYS ILE HIS GLY ALA ASN CYS ALA SEQRES 37 D 883 GLY VAL ASP LYS VAL PRO PHE PRO GLU ARG ILE LYS PHE SEQRES 38 D 883 ILE GLU GLU ASN HIS GLU ASN ILE MET ALA CYS ALA LYS SEQRES 39 D 883 SER PRO LEU GLU ASN THR TRP TRP ALA GLU GLN ASP SER SEQRES 40 D 883 PRO PHE CYS PHE LEU ALA PHE CYS PHE GLU TYR ALA GLY SEQRES 41 D 883 VAL GLN HIS HIS GLY LEU SER TYR ASN CYS SER LEU PRO SEQRES 42 D 883 LEU ALA PHE ASP GLY SER CYS SER GLY ILE GLN HIS PHE SEQRES 43 D 883 SER ALA MET LEU ARG ASP GLU VAL GLY GLY ARG ALA VAL SEQRES 44 D 883 ASN LEU LEU PRO SER GLU THR VAL GLN ASP ILE TYR GLY SEQRES 45 D 883 ILE VAL ALA LYS LYS VAL ASN GLU ILE LEU GLN ALA ASP SEQRES 46 D 883 ALA ILE ASN GLY THR ASP ASN GLU VAL VAL THR VAL THR SEQRES 47 D 883 ASP GLU ASN THR GLY GLU ILE SER GLU LYS VAL LYS LEU SEQRES 48 D 883 GLY THR LYS ALA LEU ALA GLY GLN TRP LEU ALA TYR GLY SEQRES 49 D 883 VAL THR ARG SER VAL THR LYS ARG SER VAL MET THR LEU SEQRES 50 D 883 ALA TYR GLY SER LYS GLU PHE GLY PHE ARG GLN GLN VAL SEQRES 51 D 883 LEU GLU ASP THR ILE GLN PRO ALA ILE ASP SER GLY LYS SEQRES 52 D 883 GLY LEU MET PHE THR GLN PRO ASN GLN ALA ALA GLY TYR SEQRES 53 D 883 MET ALA LYS LEU ILE TRP GLU SER VAL SER VAL THR VAL SEQRES 54 D 883 VAL ALA ALA VAL GLU ALA MET ASN TRP LEU LYS SER ALA SEQRES 55 D 883 ALA LYS LEU LEU ALA ALA GLU VAL LYS ASP LYS LYS THR SEQRES 56 D 883 GLY GLU ILE LEU ARG LYS ARG CYS ALA VAL HIS TRP VAL SEQRES 57 D 883 THR PRO ASP GLY PHE PRO VAL TRP GLN GLU TYR LYS LYS SEQRES 58 D 883 PRO ILE GLN THR ARG LEU ASN LEU MET PHE LEU GLY GLN SEQRES 59 D 883 PHE ARG LEU GLN PRO THR ILE ASN THR ASN LYS ASP SER SEQRES 60 D 883 GLU ILE ASP ALA HIS LYS GLN GLU SER GLY ILE ALA PRO SEQRES 61 D 883 ASN PHE VAL HIS SER GLN ASP GLY SER HIS LEU ARG LYS SEQRES 62 D 883 THR VAL VAL TRP ALA HIS GLU LYS TYR GLY ILE GLU SER SEQRES 63 D 883 PHE ALA LEU ILE HIS ASP SER PHE GLY THR ILE PRO ALA SEQRES 64 D 883 ASP ALA ALA ASN LEU PHE LYS ALA VAL ARG GLU THR MET SEQRES 65 D 883 VAL ASP THR TYR GLU SER CYS ASP VAL LEU ALA ASP PHE SEQRES 66 D 883 TYR ASP GLN PHE ALA ASP GLN LEU HIS GLU SER GLN LEU SEQRES 67 D 883 ASP LYS MET PRO ALA LEU PRO ALA LYS GLY ASN LEU ASN SEQRES 68 D 883 LEU ARG ASP ILE LEU GLU SER ASP PHE ALA PHE ALA FORMUL 5 HOH *190(H2 O) HELIX 1 1 PHE D 11 GLU D 15 5 5 HELIX 2 2 ALA D 17 ALA D 25 1 9 HELIX 3 3 GLY D 29 LYS D 60 1 32 HELIX 4 4 GLU D 63 ASN D 67 5 5 HELIX 5 5 ALA D 70 LYS D 95 1 26 HELIX 6 6 LYS D 110 ALA D 129 1 20 HELIX 7 7 THR D 133 LEU D 157 1 25 HELIX 8 8 HIS D 161 VAL D 166 1 6 HELIX 9 9 GLU D 167 ARG D 173 1 7 HELIX 10 10 GLY D 175 MET D 190 1 16 HELIX 11 11 GLU D 207 THR D 224 1 18 HELIX 12 12 ALA D 247 ALA D 262 1 16 HELIX 13 13 LYS D 303 TYR D 308 1 6 HELIX 14 14 MET D 313 ASN D 325 1 13 HELIX 15 15 ASN D 331 THR D 342 1 12 HELIX 16 16 LYS D 378 GLU D 403 1 26 HELIX 17 17 ASN D 437 LEU D 443 1 7 HELIX 18 18 ILE D 452 ALA D 468 1 17 HELIX 19 19 PRO D 474 ASN D 485 1 12 HELIX 20 20 ASN D 485 SER D 495 1 11 HELIX 21 21 SER D 495 THR D 500 1 6 HELIX 22 22 TRP D 501 GLN D 505 5 5 HELIX 23 23 SER D 507 GLY D 525 1 19 HELIX 24 24 CYS D 540 ARG D 551 1 12 HELIX 25 25 VAL D 554 VAL D 559 1 6 HELIX 26 26 ASP D 569 ILE D 587 1 19 HELIX 27 27 GLY D 612 ALA D 622 1 11 HELIX 28 28 THR D 626 THR D 636 1 11 HELIX 29 29 LEU D 637 GLY D 640 5 4 HELIX 30 30 LYS D 642 THR D 654 1 13 HELIX 31 31 THR D 654 SER D 661 1 8 HELIX 32 32 GLN D 669 VAL D 689 1 21 HELIX 33 33 VAL D 689 ALA D 708 1 20 HELIX 34 34 ASP D 770 TYR D 802 1 33 HELIX 35 35 ILE D 817 ALA D 819 5 3 HELIX 36 36 ASP D 820 CYS D 839 1 20 HELIX 37 37 ASP D 840 ALA D 850 1 11 HELIX 38 38 ASN D 871 GLU D 877 5 7 SHEET 1 A 2 VAL D 227 HIS D 230 0 SHEET 2 A 2 THR D 243 LEU D 246 -1 O GLU D 245 N SER D 228 SHEET 1 B 3 VAL D 297 ARG D 298 0 SHEET 2 B 3 TYR D 418 ASP D 421 1 O MET D 420 N ARG D 298 SHEET 3 B 3 VAL D 426 ALA D 428 -1 O TYR D 427 N ASN D 419 SHEET 1 C 2 TRP D 328 ILE D 330 0 SHEET 2 C 2 LEU D 444 LEU D 446 -1 O THR D 445 N LYS D 329 SHEET 1 D 2 LYS D 450 PRO D 451 0 SHEET 2 D 2 ASN D 529 CYS D 530 -1 O CYS D 530 N LYS D 450 SHEET 1 E 3 LEU D 534 ASP D 537 0 SHEET 2 E 3 SER D 813 THR D 816 -1 O THR D 816 N LEU D 534 SHEET 3 E 3 ALA D 808 LEU D 809 -1 N ALA D 808 O GLY D 815 SHEET 1 F 2 VAL D 710 LYS D 711 0 SHEET 2 F 2 ILE D 718 ARG D 720 -1 O LEU D 719 N VAL D 710 SHEET 1 G 2 VAL D 725 VAL D 728 0 SHEET 2 G 2 PRO D 734 GLN D 737 -1 O GLN D 737 N VAL D 725 SHEET 1 H 2 LEU D 747 ASN D 748 0 SHEET 2 H 2 GLN D 754 PHE D 755 -1 O PHE D 755 N LEU D 747 CRYST1 142.910 145.460 145.600 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006997 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006868 0.00000