PDB Short entry for 1MUH HEADER TRANSCRIPTION/DNA 23-SEP-02 1MUH TITLE CRYSTAL STRUCTURE OF TN5 TRANSPOSASE COMPLEXED WITH TRANSPOSON END DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TRANSFERRED STRAND; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA NON-TRANSFERRED STRAND; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: TN5 TRANSPOSASE; COMPND 11 CHAIN: A; COMPND 12 SYNONYM: PLASPOSON PTNMOD-OCM; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: TRANSPOSASE RECOGNITION SEQUENCE OCCURS NATURALLY IN SOURCE 4 THE TN5 TRANSPOSON; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 OTHER_DETAILS: TRANSPOSASE RECOGNITION SEQUENCE OCCURS NATURALLY IN SOURCE 8 THE TN5 TRANSPOSON; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PTYB1 KEYWDS TRANSPOSASE, RIBONUCLEASE H-LIKE MOTIF, PROTEIN-DNA COMPLEX, SYNAPTIC KEYWDS 2 COMPLEX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.B.THODEN,H.M.HOLDEN,D.R.DAVIES,I.Y.GORYSHIN,W.S.REZNIKOFF,I.RAYMENT REVDAT 5 14-FEB-24 1MUH 1 REMARK REVDAT 4 27-OCT-21 1MUH 1 REMARK SEQADV LINK REVDAT 3 24-JUL-19 1MUH 1 REMARK REVDAT 2 24-FEB-09 1MUH 1 VERSN REVDAT 1 27-SEP-02 1MUH 0 SPRSDE 27-SEP-02 1MUH 1F3I JRNL AUTH D.R.DAVIES,I.Y.GORYSHIN,W.S.REZNIKOFF,I.RAYMENT JRNL TITL THREE-DIMENSIONAL STRUCTURE OF THE TN5 SYNAPTIC COMPLEX JRNL TITL 2 TRANSPOSITION INTERMEDIATE. JRNL REF SCIENCE V. 289 77 2000 JRNL REFN ISSN 0036-8075 JRNL PMID 10884228 JRNL DOI 10.1126/SCIENCE.289.5476.77 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39412 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4025 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.2060 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 39412 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3566 REMARK 3 NUCLEIC ACID ATOMS : 814 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 306 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : 11.300 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.015 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.710 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MUH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-02. REMARK 100 THE DEPOSITION ID IS D_1000017190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-99 REMARK 200 TEMPERATURE (KELVIN) : 113.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.70090,0.97910,0.97630, 0.72130 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39476 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 14.94 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG400, SUCCINATE, PH 6.00, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 152.06667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.03333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 114.05000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.01667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 190.08333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 152.06667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 76.03333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 38.01667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 114.05000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 190.08333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HOMODIMER, THE SECOND HALF IS GENERATED BY: REMARK 300 REMARK 300 ROTATION MATRIX: REMARK 300 0.50000 0.86603 0.00000 REMARK 300 0.86603 -0.50000 0.00000 REMARK 300 0.00000 0.00000 -1.00000 REMARK 300 TRANSLATION VECTOR IN AS -0.00049 -0.00062 -38.01598 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -38.01667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -3 REMARK 465 VAL A -2 REMARK 465 THR A -1 REMARK 465 PHE A 0 REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 PRO A 373 REMARK 465 GLN A 374 REMARK 465 ALA A 375 REMARK 465 LEU A 376 REMARK 465 ARG A 377 REMARK 465 ALA A 378 REMARK 465 GLN A 379 REMARK 465 GLY A 380 REMARK 465 LEU A 381 REMARK 465 LEU A 382 REMARK 465 LYS A 383 REMARK 465 GLU A 384 REMARK 465 ALA A 385 REMARK 465 GLU A 386 REMARK 465 HIS A 387 REMARK 465 VAL A 388 REMARK 465 GLU A 389 REMARK 465 SER A 390 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 7 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 ASP A 158 CG OD1 OD2 REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 GLU A 394 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 392 OG1 THR A 395 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT B 7 O3' DT B 7 C3' -0.064 REMARK 500 DT B 11 O3' DT B 11 C3' -0.047 REMARK 500 DA B 12 O3' DA B 12 C3' -0.040 REMARK 500 DA B 13 O3' DA B 13 C3' -0.041 REMARK 500 DT B 17 O3' DT B 17 C3' -0.094 REMARK 500 DA B 19 P DA B 19 O5' 0.063 REMARK 500 DG C 3 O3' DG C 3 C3' -0.048 REMARK 500 DC C 5 O3' DC C 5 C3' -0.061 REMARK 500 DA C 12 O3' DA C 12 C3' -0.041 REMARK 500 DA C 14 O3' DA C 14 C3' -0.053 REMARK 500 DG C 18 O3' DG C 18 C3' -0.043 REMARK 500 GLU A 58 CD GLU A 58 OE2 0.067 REMARK 500 GLU A 72 CD GLU A 72 OE2 0.088 REMARK 500 GLU A 88 CD GLU A 88 OE2 0.073 REMARK 500 GLU A 159 CD GLU A 159 OE2 0.078 REMARK 500 GLU A 161 CD GLU A 161 OE2 0.071 REMARK 500 GLU A 219 CD GLU A 219 OE2 0.088 REMARK 500 GLU A 233 CD GLU A 233 OE2 0.072 REMARK 500 GLU A 285 CD GLU A 285 OE2 0.081 REMARK 500 GLU A 326 CD GLU A 326 OE2 0.089 REMARK 500 GLU A 345 CD GLU A 345 OE2 0.069 REMARK 500 GLU A 417 CD GLU A 417 OE2 0.074 REMARK 500 GLU A 454 CD GLU A 454 OE2 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 1 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG B 1 C8 - N9 - C1' ANGL. DEV. = 18.9 DEGREES REMARK 500 DG B 1 C4 - N9 - C1' ANGL. DEV. = -20.1 DEGREES REMARK 500 DA B 2 O4' - C1' - C2' ANGL. DEV. = 4.3 DEGREES REMARK 500 DA B 2 C8 - N9 - C1' ANGL. DEV. = 12.5 DEGREES REMARK 500 DA B 2 C4 - N9 - C1' ANGL. DEV. = -14.3 DEGREES REMARK 500 DC B 3 C2 - N1 - C1' ANGL. DEV. = -6.6 DEGREES REMARK 500 DT B 4 C5' - C4' - C3' ANGL. DEV. = -11.7 DEGREES REMARK 500 DT B 4 C4' - C3' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DT B 4 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 DT B 4 C6 - N1 - C1' ANGL. DEV. = -11.7 DEGREES REMARK 500 DT B 4 C2 - N1 - C1' ANGL. DEV. = 12.4 DEGREES REMARK 500 DT B 5 C2 - N1 - C1' ANGL. DEV. = -11.5 DEGREES REMARK 500 DT B 5 C3' - O3' - P ANGL. DEV. = 11.9 DEGREES REMARK 500 DG B 6 O4' - C1' - N9 ANGL. DEV. = -8.1 DEGREES REMARK 500 DT B 9 C6 - N1 - C1' ANGL. DEV. = -10.5 DEGREES REMARK 500 DA B 10 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT B 11 C3' - O3' - P ANGL. DEV. = -8.2 DEGREES REMARK 500 DA B 13 O5' - C5' - C4' ANGL. DEV. = -4.8 DEGREES REMARK 500 DA B 13 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG B 14 P - O5' - C5' ANGL. DEV. = -11.5 DEGREES REMARK 500 DG B 14 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DA B 15 O4' - C1' - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 DG B 16 O4' - C1' - N9 ANGL. DEV. = -4.2 DEGREES REMARK 500 DC B 18 N3 - C4 - C5 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA B 19 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 DA B 19 C8 - N9 - C1' ANGL. DEV. = 21.4 DEGREES REMARK 500 DA B 19 C4 - N9 - C1' ANGL. DEV. = -28.4 DEGREES REMARK 500 DG B 20 O4' - C4' - C3' ANGL. DEV. = -3.8 DEGREES REMARK 500 DC C 1 C6 - N1 - C1' ANGL. DEV. = -9.8 DEGREES REMARK 500 DC C 1 C2 - N1 - C1' ANGL. DEV. = 9.8 DEGREES REMARK 500 DT C 2 C5' - C4' - C3' ANGL. DEV. = 11.8 DEGREES REMARK 500 DT C 2 C4' - C3' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 DT C 2 O4' - C1' - N1 ANGL. DEV. = -5.3 DEGREES REMARK 500 DT C 2 C6 - N1 - C1' ANGL. DEV. = -14.6 DEGREES REMARK 500 DT C 2 C2 - N1 - C1' ANGL. DEV. = 12.7 DEGREES REMARK 500 DA C 4 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 DA C 4 C8 - N9 - C1' ANGL. DEV. = 17.1 DEGREES REMARK 500 DA C 4 C4 - N9 - C1' ANGL. DEV. = -15.7 DEGREES REMARK 500 DC C 5 P - O5' - C5' ANGL. DEV. = -10.2 DEGREES REMARK 500 DC C 5 O4' - C1' - C2' ANGL. DEV. = 3.2 DEGREES REMARK 500 DC C 5 C5 - C6 - N1 ANGL. DEV. = -3.2 DEGREES REMARK 500 DC C 7 O4' - C1' - N1 ANGL. DEV. = -4.4 DEGREES REMARK 500 DC C 7 C6 - N1 - C2 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT C 8 O4' - C1' - N1 ANGL. DEV. = -8.3 DEGREES REMARK 500 DT C 9 C6 - N1 - C2 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA C 10 C8 - N9 - C4 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT C 11 O4' - C1' - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 DT C 11 C4 - C5 - C7 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT C 11 C3' - O3' - P ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 102 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 24 123.70 -176.63 REMARK 500 TYR A 41 54.15 -118.43 REMARK 500 GLU A 51 49.45 36.32 REMARK 500 ASP A 192 70.32 -62.08 REMARK 500 GLN A 274 -88.81 -40.54 REMARK 500 ASN A 288 60.49 35.44 REMARK 500 LYS A 333 -79.86 -99.66 REMARK 500 GLU A 394 10.15 -68.25 REMARK 500 ALA A 419 103.54 -53.39 REMARK 500 LYS A 467 -76.39 -42.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA B 19 0.06 SIDE CHAIN REMARK 500 DT C 11 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 478 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 20 O3' REMARK 620 2 ASP A 97 OD2 153.0 REMARK 620 3 GLU A 326 OE1 92.1 97.4 REMARK 620 4 HOH A 529 O 96.2 93.5 138.0 REMARK 620 5 HOH A 578 O 81.4 71.8 103.1 118.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 479 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 110 OE1 REMARK 620 2 GLU A 110 OE2 61.7 REMARK 620 3 GLU A 345 OE1 135.3 162.9 REMARK 620 4 GLU A 345 OE2 89.4 145.5 48.2 REMARK 620 5 HOH A 645 O 101.9 70.0 100.0 101.0 REMARK 620 6 HOH A 722 O 134.5 87.5 79.8 127.0 97.1 REMARK 620 7 HOH A 723 O 81.2 113.5 76.3 76.8 176.2 82.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 478 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 479 DBREF 1MUH A -3 476 UNP Q46731 Q46731_ECOLI 1 480 DBREF 1MUH B 1 20 PDB 1MUH 1MUH 1 20 DBREF 1MUH C 1 20 PDB 1MUH 1MUH 1 20 SEQADV 1MUH LYS A 54 UNP Q46731 GLU 58 ENGINEERED MUTATION SEQADV 1MUH ALA A 56 UNP Q46731 MET 60 ENGINEERED MUTATION SEQADV 1MUH PRO A 372 UNP Q46731 LEU 376 ENGINEERED MUTATION SEQADV 1MUH GLY A 477 UNP Q46731 CLONING ARTIFACT SEQRES 1 B 20 DG DA DC DT DT DG DT DG DT DA DT DA DA SEQRES 2 B 20 DG DA DG DT DC DA DG SEQRES 1 C 20 DC DT DG DA DC DT DC DT DT DA DT DA DC SEQRES 2 C 20 DA DC DA DA DG DT DC SEQRES 1 A 481 MET VAL THR PHE MET ILE THR SER ALA LEU HIS ARG ALA SEQRES 2 A 481 ALA ASP TRP ALA LYS SER VAL PHE SER SER ALA ALA LEU SEQRES 3 A 481 GLY ASP PRO ARG ARG THR ALA ARG LEU VAL ASN VAL ALA SEQRES 4 A 481 ALA GLN LEU ALA LYS TYR SER GLY LYS SER ILE THR ILE SEQRES 5 A 481 SER SER GLU GLY SER LYS ALA ALA GLN GLU GLY ALA TYR SEQRES 6 A 481 ARG PHE ILE ARG ASN PRO ASN VAL SER ALA GLU ALA ILE SEQRES 7 A 481 ARG LYS ALA GLY ALA MET GLN THR VAL LYS LEU ALA GLN SEQRES 8 A 481 GLU PHE PRO GLU LEU LEU ALA ILE GLU ASP THR THR SER SEQRES 9 A 481 LEU SER TYR ARG HIS GLN VAL ALA GLU GLU LEU GLY LYS SEQRES 10 A 481 LEU GLY SER ILE GLN ASP LYS SER ARG GLY TRP TRP VAL SEQRES 11 A 481 HIS SER VAL LEU LEU LEU GLU ALA THR THR PHE ARG THR SEQRES 12 A 481 VAL GLY LEU LEU HIS GLN GLU TRP TRP MET ARG PRO ASP SEQRES 13 A 481 ASP PRO ALA ASP ALA ASP GLU LYS GLU SER GLY LYS TRP SEQRES 14 A 481 LEU ALA ALA ALA ALA THR SER ARG LEU ARG MET GLY SER SEQRES 15 A 481 MET MET SER ASN VAL ILE ALA VAL CYS ASP ARG GLU ALA SEQRES 16 A 481 ASP ILE HIS ALA TYR LEU GLN ASP LYS LEU ALA HIS ASN SEQRES 17 A 481 GLU ARG PHE VAL VAL ARG SER LYS HIS PRO ARG LYS ASP SEQRES 18 A 481 VAL GLU SER GLY LEU TYR LEU TYR ASP HIS LEU LYS ASN SEQRES 19 A 481 GLN PRO GLU LEU GLY GLY TYR GLN ILE SER ILE PRO GLN SEQRES 20 A 481 LYS GLY VAL VAL ASP LYS ARG GLY LYS ARG LYS ASN ARG SEQRES 21 A 481 PRO ALA ARG LYS ALA SER LEU SER LEU ARG SER GLY ARG SEQRES 22 A 481 ILE THR LEU LYS GLN GLY ASN ILE THR LEU ASN ALA VAL SEQRES 23 A 481 LEU ALA GLU GLU ILE ASN PRO PRO LYS GLY GLU THR PRO SEQRES 24 A 481 LEU LYS TRP LEU LEU LEU THR SER GLU PRO VAL GLU SER SEQRES 25 A 481 LEU ALA GLN ALA LEU ARG VAL ILE ASP ILE TYR THR HIS SEQRES 26 A 481 ARG TRP ARG ILE GLU GLU PHE HIS LYS ALA TRP LYS THR SEQRES 27 A 481 GLY ALA GLY ALA GLU ARG GLN ARG MET GLU GLU PRO ASP SEQRES 28 A 481 ASN LEU GLU ARG MET VAL SER ILE LEU SER PHE VAL ALA SEQRES 29 A 481 VAL ARG LEU LEU GLN LEU ARG GLU SER PHE THR PRO PRO SEQRES 30 A 481 GLN ALA LEU ARG ALA GLN GLY LEU LEU LYS GLU ALA GLU SEQRES 31 A 481 HIS VAL GLU SER GLN SER ALA GLU THR VAL LEU THR PRO SEQRES 32 A 481 ASP GLU CYS GLN LEU LEU GLY TYR LEU ASP LYS GLY LYS SEQRES 33 A 481 ARG LYS ARG LYS GLU LYS ALA GLY SER LEU GLN TRP ALA SEQRES 34 A 481 TYR MET ALA ILE ALA ARG LEU GLY GLY PHE MET ASP SER SEQRES 35 A 481 LYS ARG THR GLY ILE ALA SER TRP GLY ALA LEU TRP GLU SEQRES 36 A 481 GLY TRP GLU ALA LEU GLN SER LYS LEU ASP GLY PHE LEU SEQRES 37 A 481 ALA ALA LYS ASP LEU MET ALA GLN GLY ILE LYS ILE GLY HET MN A 478 1 HET MG A 479 1 HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION FORMUL 4 MN MN 2+ FORMUL 5 MG MG 2+ FORMUL 6 HOH *306(H2 O) HELIX 1 1 HIS A 7 SER A 18 1 12 HELIX 2 2 ASP A 24 TYR A 41 1 18 HELIX 3 3 SER A 45 SER A 50 1 6 HELIX 4 4 SER A 53 ARG A 65 1 13 HELIX 5 5 SER A 70 GLN A 87 1 18 HELIX 6 6 HIS A 105 LEU A 111 5 7 HELIX 7 7 ASP A 153 ALA A 157 5 5 HELIX 8 8 LYS A 160 SER A 162 5 3 HELIX 9 9 GLY A 163 GLY A 177 1 15 HELIX 10 10 SER A 178 SER A 181 5 4 HELIX 11 11 ASP A 188 ASP A 192 5 5 HELIX 12 12 ILE A 193 HIS A 203 1 11 HELIX 13 13 LEU A 224 ASN A 230 1 7 HELIX 14 14 SER A 308 HIS A 321 1 14 HELIX 15 15 TRP A 323 LYS A 333 1 11 HELIX 16 16 GLY A 337 GLN A 341 5 5 HELIX 17 17 GLU A 345 SER A 369 1 25 HELIX 18 18 SER A 392 VAL A 396 5 5 HELIX 19 19 THR A 398 ASP A 409 1 12 HELIX 20 20 SER A 421 GLY A 433 1 13 HELIX 21 21 SER A 445 GLN A 472 1 28 SHEET 1 A 9 THR A 139 TRP A 148 0 SHEET 2 A 9 ARG A 122 GLU A 133 -1 N VAL A 129 O HIS A 144 SHEET 3 A 9 LEU A 92 TYR A 103 -1 N ASP A 97 O SER A 128 SHEET 4 A 9 VAL A 183 CYS A 187 1 O ILE A 184 N ALA A 94 SHEET 5 A 9 ARG A 206 ARG A 210 1 O VAL A 208 N ALA A 185 SHEET 6 A 9 LYS A 297 THR A 302 -1 O LEU A 301 N VAL A 209 SHEET 7 A 9 ILE A 277 GLU A 286 -1 N VAL A 282 O LEU A 300 SHEET 8 A 9 ARG A 259 LEU A 272 -1 N ILE A 270 O LEU A 279 SHEET 9 A 9 GLY A 235 ILE A 241 -1 N ILE A 241 O ARG A 259 SHEET 1 B 2 LYS A 216 ASP A 217 0 SHEET 2 B 2 LEU A 222 TYR A 223 -1 O LEU A 222 N ASP A 217 SHEET 1 C 2 LYS A 244 VAL A 247 0 SHEET 2 C 2 ARG A 253 ARG A 256 -1 O ARG A 256 N LYS A 244 LINK O3' DG B 20 MN MN A 478 1555 1555 1.87 LINK OD2 ASP A 97 MN MN A 478 1555 1555 2.12 LINK OE1 GLU A 110 MG MG A 479 1555 1555 2.27 LINK OE2 GLU A 110 MG MG A 479 1555 1555 2.05 LINK OE1 GLU A 326 MN MN A 478 1555 1555 2.16 LINK OE1 GLU A 345 MG MG A 479 1555 1555 2.99 LINK OE2 GLU A 345 MG MG A 479 1555 1555 2.16 LINK MN MN A 478 O HOH A 529 1555 1555 2.45 LINK MN MN A 478 O HOH A 578 1555 1555 1.87 LINK MG MG A 479 O HOH A 645 1555 1555 2.30 LINK MG MG A 479 O HOH A 722 1555 1555 2.13 LINK MG MG A 479 O HOH A 723 1555 1555 2.25 SITE 1 AC1 5 ASP A 97 GLU A 326 HOH A 529 HOH A 578 SITE 2 AC1 5 DG B 20 SITE 1 AC2 5 GLU A 110 GLU A 345 HOH A 645 HOH A 722 SITE 2 AC2 5 HOH A 723 CRYST1 113.700 113.700 228.100 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008795 0.005078 0.000000 0.00000 SCALE2 0.000000 0.010156 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004384 0.00000