PDB Short entry for 1MW4 HEADER HORMONE/GROWTH FACTOR/TRANSFERASE 27-SEP-02 1MW4 TITLE SOLUTION STRUCTURE OF THE HUMAN GRB7-SH2 DOMAIN IN COMPLEX WITH A 10 TITLE 2 AMINO ACID PEPTIDE PY1139 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH FACTOR RECEPTOR-BOUND PROTEIN 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH2 DOMAIN; COMPND 5 SYNONYM: GRB7 ADAPTER PROTEIN, EPIDERMAL GROWTH FACTOR RECEPTOR GRB- COMPND 6 7, B47; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RECEPTOR PROTEIN-TYROSINE KINASE ERBB-2; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: SH2 DOMAIN BINDING SITE; COMPND 12 SYNONYM: PY1139, NEU PROTO-ONCOGENE, C-ERBB-2, TYROSINE KINASE-TYPE COMPND 13 CELL SURFACE RECEPTOR HER2, MLN 19; COMPND 14 EC: 2.7.10.1; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX2T; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 13 OF THE PEPTIDE IS NATURALLY FOUND IN HOMO SAPIENS (HUMAN). KEYWDS SH2 DOMAIN IN COMPLEX WITH A LIGAND, HORMONE-GROWTH FACTOR- KEYWDS 2 TRANSFERASE COMPLEX EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.IVANCIC,B.A.LYONS REVDAT 3 02-MAY-12 1MW4 1 COMPND VERSN REVDAT 2 24-FEB-09 1MW4 1 VERSN REVDAT 1 09-SEP-03 1MW4 0 JRNL AUTH M.IVANCIC,R.J.DALY,B.A.LYONS JRNL TITL SOLUTION STRUCTURE OF THE HUMAN GRB7-SH2 DOMAIN/ERBB2 JRNL TITL 2 PEPTIDE COMPLEX AND STRUCTURAL BASIS FOR GRB7 BINDING TO JRNL TITL 3 ERBB2 JRNL REF J.BIOMOL.NMR V. 27 205 2003 JRNL REFN ISSN 0925-2738 JRNL PMID 12975581 JRNL DOI 10.1023/A:1025498409113 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.J.BRESCIA,M.IVANCIC,B.A.LYONS REMARK 1 TITL ASSIGNMENT OF BACKBONE 1H, 13C, AND 15N RESONANCES OF HUMAN REMARK 1 TITL 2 GRB7-SH2 DOMAIN IN COMPLEX WITH A PHOSPHORYLATED PEPTIDE REMARK 1 TITL 3 LIGAND REMARK 1 REF J.BIOMOL.NMR V. 23 77 2002 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1015345302576 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURE IS BASED ON A TOTAL OF 1904 RESTRAINTS: 1660 REMARK 3 ARE NOE DERIVED, 120 ARE DIHEDRAL RESTRAINTS AND 124 ARE REMARK 3 DISTANCE RESTRAINTS FROM HYDROGEN BONDS. REMARK 4 REMARK 4 1MW4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-02. REMARK 100 THE RCSB ID CODE IS RCSB017238. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : 100 MM NACL REMARK 210 PRESSURE : 1ATM REMARK 210 SAMPLE CONTENTS : 0.7MM GRB7 SH2 U-15N, 13C, 50MM REMARK 210 ACETATE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AZARA 2.6, ANSIG 3.3, CNS 1.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH FAVORABLE NON- REMARK 210 BOND ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 5 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 92 H LEU A 96 1.42 REMARK 500 O VAL A 39 H GLY A 41 1.45 REMARK 500 OE1 GLU A 47 H SER A 48 1.49 REMARK 500 O THR A 88 H PHE A 90 1.58 REMARK 500 O THR A 88 N PHE A 90 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -64.78 -150.21 REMARK 500 1 PRO A 3 107.58 -58.93 REMARK 500 1 ALA A 4 -47.96 -149.59 REMARK 500 1 THR A 7 -74.81 -135.57 REMARK 500 1 ALA A 12 78.28 -150.05 REMARK 500 1 THR A 16 -147.04 -141.10 REMARK 500 1 GLN A 17 31.88 -99.34 REMARK 500 1 SER A 25 88.93 -41.68 REMARK 500 1 ASP A 40 54.29 -68.59 REMARK 500 1 GLU A 47 -116.39 -142.33 REMARK 500 1 GLN A 53 65.04 -111.26 REMARK 500 1 LEU A 62 39.61 -94.00 REMARK 500 1 GLN A 63 -40.26 -152.80 REMARK 500 1 LYS A 64 -158.83 -154.03 REMARK 500 1 ILE A 70 -38.93 -143.10 REMARK 500 1 SER A 73 99.05 -62.94 REMARK 500 1 ARG A 78 -111.15 -135.05 REMARK 500 1 SER A 82 -115.12 -150.15 REMARK 500 1 ASP A 85 38.88 -140.41 REMARK 500 1 ARG A 89 64.60 -39.66 REMARK 500 1 PHE A 90 -156.77 -141.49 REMARK 500 1 THR A 91 165.26 -46.93 REMARK 500 1 ASP A 92 -69.41 -150.19 REMARK 500 1 LEU A 93 -72.28 -39.73 REMARK 500 1 ASN A 103 -159.25 -105.56 REMARK 500 1 LEU A 107 -100.71 -29.79 REMARK 500 1 PRO A 108 50.00 -105.53 REMARK 500 1 LEU A 110 92.78 -44.70 REMARK 500 1 CYS A 114 -85.33 -140.27 REMARK 500 1 VAL A 118 -69.06 -140.93 REMARK 500 1 ALA A 119 -84.29 -80.05 REMARK 500 1 GLN B1136 -52.35 -157.42 REMARK 500 1 PRO B1137 -146.87 -69.70 REMARK 500 1 GLU B1138 -68.82 -147.67 REMARK 500 1 PTR B1139 -141.22 15.93 REMARK 500 1 ASN B1141 -29.94 89.92 REMARK 500 1 GLN B1142 172.55 176.88 REMARK 500 1 PRO B1143 -6.11 -57.21 REMARK 500 2 SER A 2 -64.74 -150.14 REMARK 500 2 PRO A 3 87.17 -58.55 REMARK 500 2 THR A 16 -86.22 -141.06 REMARK 500 2 GLN A 17 21.66 -150.36 REMARK 500 2 TRP A 19 57.70 -140.05 REMARK 500 2 ARG A 23 99.63 -67.83 REMARK 500 2 SER A 25 93.75 -34.81 REMARK 500 2 LEU A 32 -64.21 -103.29 REMARK 500 2 ASP A 40 54.26 -62.21 REMARK 500 2 PRO A 52 -34.21 -39.57 REMARK 500 2 LEU A 62 35.76 -93.85 REMARK 500 2 GLN A 63 -32.95 -152.98 REMARK 500 REMARK 500 THIS ENTRY HAS 332 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5288 RELATED DB: BMRB REMARK 900 BACKBONE N, HN, CA AND CB ASSIGNMENTS FOR HGRB7-SH2 DOMAIN DBREF 1MW4 A 3 120 UNP Q14451 GRB7_HUMAN 415 532 DBREF 1MW4 B 1135 1144 UNP P04626 ERBB2_HUMAN 1135 1144 SEQADV 1MW4 GLY A 1 UNP Q14451 CLONING ARTIFACT SEQADV 1MW4 SER A 2 UNP Q14451 CLONING ARTIFACT SEQADV 1MW4 PTR B 1139 UNP P04626 TYR 1139 MODIFIED RESIDUE SEQRES 1 A 120 GLY SER PRO ALA SER GLY THR SER LEU SER ALA ALA ILE SEQRES 2 A 120 HIS ARG THR GLN LEU TRP PHE HIS GLY ARG ILE SER ARG SEQRES 3 A 120 GLU GLU SER GLN ARG LEU ILE GLY GLN GLN GLY LEU VAL SEQRES 4 A 120 ASP GLY LEU PHE LEU VAL ARG GLU SER GLN ARG ASN PRO SEQRES 5 A 120 GLN GLY PHE VAL LEU SER LEU CYS HIS LEU GLN LYS VAL SEQRES 6 A 120 LYS HIS TYR LEU ILE LEU PRO SER GLU GLU GLU GLY ARG SEQRES 7 A 120 LEU TYR PHE SER MET ASP ASP GLY GLN THR ARG PHE THR SEQRES 8 A 120 ASP LEU LEU GLN LEU VAL GLU PHE HIS GLN LEU ASN ARG SEQRES 9 A 120 GLY ILE LEU PRO CYS LEU LEU ARG HIS CYS CYS THR ARG SEQRES 10 A 120 VAL ALA LEU SEQRES 1 B 10 PRO GLN PRO GLU PTR VAL ASN GLN PRO ASP MODRES 1MW4 PTR B 1139 TYR O-PHOSPHOTYROSINE HET PTR B1139 24 HETNAM PTR O-PHOSPHOTYROSINE HETSYN PTR PHOSPHONOTYROSINE FORMUL 2 PTR C9 H12 N O6 P HELIX 1 1 SER A 25 ILE A 33 1 9 HELIX 2 2 GLY A 34 GLN A 36 5 3 HELIX 3 3 ASP A 92 HIS A 100 1 9 SHEET 1 A 4 PHE A 20 HIS A 21 0 SHEET 2 A 4 LEU A 44 GLU A 47 1 O GLU A 47 N HIS A 21 SHEET 3 A 4 PHE A 55 CYS A 60 -1 O SER A 58 N LEU A 44 SHEET 4 A 4 VAL A 65 LEU A 69 -1 O TYR A 68 N LEU A 57 LINK C GLU B1138 N PTR B1139 1555 1555 1.33 LINK C PTR B1139 N VAL B1140 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000