PDB Short entry for 1MX3 HEADER TRANSCRIPTION REPRESSOR 01-OCT-02 1MX3 TITLE CRYSTAL STRUCTURE OF CTBP DEHYDROGENASE CORE HOLO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-TERMINAL BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 28-353; COMPND 5 SYNONYM: CTBP1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CTBP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21(DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS NUCLEAR PROTEIN, PHOSPHORYLATION, TRANSCRIPTIONAL COREPRESSOR, KEYWDS 2 TRANSCRIPTION REPRESSOR EXPDTA X-RAY DIFFRACTION AUTHOR V.KUMAR,J.E.CARLSON,K.E.OHGI,T.E.EDWARDS,D.W.ROSE,C.R.ESCALANTE, AUTHOR 2 A.K.AGGARWAL REVDAT 4 14-FEB-24 1MX3 1 REMARK SEQADV REVDAT 3 13-JUL-11 1MX3 1 VERSN REVDAT 2 24-FEB-09 1MX3 1 VERSN REVDAT 1 18-DEC-02 1MX3 0 JRNL AUTH V.KUMAR,J.E.CARLSON,K.E.OHGI,T.E.EDWARDS,D.W.ROSE, JRNL AUTH 2 C.R.ESCALANTE,A.K.AGGARWAL JRNL TITL TRANSCRIPTION COREPRESSOR CTBP IS AN NAD+-REGULATED JRNL TITL 2 DEHYDROGENASE JRNL REF MOL.CELL V. 10 857 2002 JRNL REFN ISSN 1097-2765 JRNL PMID 12419229 JRNL DOI 10.1016/S1097-2765(02)00650-0 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 52834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2642 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2512 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 415 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1MX3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-02. REMARK 100 THE DEPOSITION ID IS D_1000017268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : NULL; NULL REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; APS REMARK 200 BEAMLINE : X25; 32-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.140; 0.97957, 0.97941, 0.96859 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : NULL; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52854 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, MAGNESIUM ACETATE, REMARK 280 HEPES, PH 7, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.66667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 109.33333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 54.66667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 109.33333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.66667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 109.33333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 54.66667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 109.33333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -44.55000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 77.16286 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 109.33333 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -44.55000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 77.16286 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 109.33333 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 -44.55000 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 77.16286 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 109.33333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 7 REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 GLY A 19 REMARK 465 LEU A 20 REMARK 465 VAL A 21 REMARK 465 PRO A 22 REMARK 465 ARG A 23 REMARK 465 GLY A 24 REMARK 465 SER A 25 REMARK 465 HIS A 26 REMARK 465 LYS A 353 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 336 NH1 ARG A 336 11556 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 200 N VAL A 200 CA 0.269 REMARK 500 CYS A 350 C VAL A 351 N -0.145 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 200 C - N - CA ANGL. DEV. = -24.4 DEGREES REMARK 500 VAL A 200 N - CA - CB ANGL. DEV. = -16.1 DEGREES REMARK 500 CYS A 350 O - C - N ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 52.03 -106.73 REMARK 500 TYR A 76 -153.61 -93.87 REMARK 500 LEU A 182 62.58 -103.93 REMARK 500 ASP A 204 91.79 -160.47 REMARK 500 HIS A 236 31.77 -145.81 REMARK 500 ALA A 265 -86.32 -93.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 4000 DBREF 1MX3 A 28 353 UNP Q13363 CTBP1_HUMAN 28 353 SEQADV 1MX3 MET A 7 UNP Q13363 EXPRESSION TAG SEQADV 1MX3 GLY A 8 UNP Q13363 EXPRESSION TAG SEQADV 1MX3 SER A 9 UNP Q13363 EXPRESSION TAG SEQADV 1MX3 SER A 10 UNP Q13363 EXPRESSION TAG SEQADV 1MX3 HIS A 11 UNP Q13363 EXPRESSION TAG SEQADV 1MX3 HIS A 12 UNP Q13363 EXPRESSION TAG SEQADV 1MX3 HIS A 13 UNP Q13363 EXPRESSION TAG SEQADV 1MX3 HIS A 14 UNP Q13363 EXPRESSION TAG SEQADV 1MX3 HIS A 15 UNP Q13363 EXPRESSION TAG SEQADV 1MX3 HIS A 16 UNP Q13363 EXPRESSION TAG SEQADV 1MX3 SER A 17 UNP Q13363 EXPRESSION TAG SEQADV 1MX3 SER A 18 UNP Q13363 EXPRESSION TAG SEQADV 1MX3 GLY A 19 UNP Q13363 EXPRESSION TAG SEQADV 1MX3 LEU A 20 UNP Q13363 EXPRESSION TAG SEQADV 1MX3 VAL A 21 UNP Q13363 EXPRESSION TAG SEQADV 1MX3 PRO A 22 UNP Q13363 EXPRESSION TAG SEQADV 1MX3 ARG A 23 UNP Q13363 EXPRESSION TAG SEQADV 1MX3 GLY A 24 UNP Q13363 EXPRESSION TAG SEQADV 1MX3 SER A 25 UNP Q13363 EXPRESSION TAG SEQADV 1MX3 HIS A 26 UNP Q13363 EXPRESSION TAG SEQADV 1MX3 MET A 27 UNP Q13363 EXPRESSION TAG SEQRES 1 A 347 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 347 LEU VAL PRO ARG GLY SER HIS MET PRO LEU VAL ALA LEU SEQRES 3 A 347 LEU ASP GLY ARG ASP CYS THR VAL GLU MET PRO ILE LEU SEQRES 4 A 347 LYS ASP VAL ALA THR VAL ALA PHE CYS ASP ALA GLN SER SEQRES 5 A 347 THR GLN GLU ILE HIS GLU LYS VAL LEU ASN GLU ALA VAL SEQRES 6 A 347 GLY ALA LEU MET TYR HIS THR ILE THR LEU THR ARG GLU SEQRES 7 A 347 ASP LEU GLU LYS PHE LYS ALA LEU ARG ILE ILE VAL ARG SEQRES 8 A 347 ILE GLY SER GLY PHE ASP ASN ILE ASP ILE LYS SER ALA SEQRES 9 A 347 GLY ASP LEU GLY ILE ALA VAL CYS ASN VAL PRO ALA ALA SEQRES 10 A 347 SER VAL GLU GLU THR ALA ASP SER THR LEU CYS HIS ILE SEQRES 11 A 347 LEU ASN LEU TYR ARG ARG ALA THR TRP LEU HIS GLN ALA SEQRES 12 A 347 LEU ARG GLU GLY THR ARG VAL GLN SER VAL GLU GLN ILE SEQRES 13 A 347 ARG GLU VAL ALA SER GLY ALA ALA ARG ILE ARG GLY GLU SEQRES 14 A 347 THR LEU GLY ILE ILE GLY LEU GLY ARG VAL GLY GLN ALA SEQRES 15 A 347 VAL ALA LEU ARG ALA LYS ALA PHE GLY PHE ASN VAL LEU SEQRES 16 A 347 PHE TYR ASP PRO TYR LEU SER ASP GLY VAL GLU ARG ALA SEQRES 17 A 347 LEU GLY LEU GLN ARG VAL SER THR LEU GLN ASP LEU LEU SEQRES 18 A 347 PHE HIS SER ASP CYS VAL THR LEU HIS CYS GLY LEU ASN SEQRES 19 A 347 GLU HIS ASN HIS HIS LEU ILE ASN ASP PHE THR VAL LYS SEQRES 20 A 347 GLN MET ARG GLN GLY ALA PHE LEU VAL ASN THR ALA ARG SEQRES 21 A 347 GLY GLY LEU VAL ASP GLU LYS ALA LEU ALA GLN ALA LEU SEQRES 22 A 347 LYS GLU GLY ARG ILE ARG GLY ALA ALA LEU ASP VAL HIS SEQRES 23 A 347 GLU SER GLU PRO PHE SER PHE SER GLN GLY PRO LEU LYS SEQRES 24 A 347 ASP ALA PRO ASN LEU ILE CYS THR PRO HIS ALA ALA TRP SEQRES 25 A 347 TYR SER GLU GLN ALA SER ILE GLU MET ARG GLU GLU ALA SEQRES 26 A 347 ALA ARG GLU ILE ARG ARG ALA ILE THR GLY ARG ILE PRO SEQRES 27 A 347 ASP SER LEU LYS ASN CYS VAL ASN LYS HET NAD A1000 44 HET ACY A4000 4 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM ACY ACETIC ACID FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 ACY C2 H4 O2 FORMUL 4 HOH *415(H2 O) HELIX 1 1 GLU A 41 LYS A 46 1 6 HELIX 2 2 SER A 58 ILE A 62 5 5 HELIX 3 3 HIS A 63 GLU A 69 1 7 HELIX 4 4 THR A 82 GLU A 87 1 6 HELIX 5 5 ASP A 106 LEU A 113 1 8 HELIX 6 6 SER A 124 ARG A 142 1 19 HELIX 7 7 ARG A 142 GLU A 152 1 11 HELIX 8 8 SER A 158 ALA A 166 1 9 HELIX 9 9 GLY A 183 ALA A 195 1 13 HELIX 10 10 GLY A 210 GLY A 216 1 7 HELIX 11 11 THR A 222 SER A 230 1 9 HELIX 12 12 ASN A 248 LYS A 253 1 6 HELIX 13 13 ASP A 271 GLU A 281 1 11 HELIX 14 14 SER A 320 GLY A 341 1 22 SHEET 1 A 5 THR A 50 PHE A 53 0 SHEET 2 A 5 LEU A 29 LEU A 32 1 N VAL A 30 O THR A 50 SHEET 3 A 5 ALA A 70 MET A 75 1 O VAL A 71 N LEU A 29 SHEET 4 A 5 ILE A 94 ARG A 97 1 O VAL A 96 N ALA A 73 SHEET 5 A 5 ALA A 116 CYS A 118 1 O ALA A 116 N ILE A 95 SHEET 1 B 7 GLN A 218 ARG A 219 0 SHEET 2 B 7 ASN A 199 TYR A 203 1 N PHE A 202 O GLN A 218 SHEET 3 B 7 THR A 176 ILE A 180 1 N ILE A 179 O LEU A 201 SHEET 4 B 7 CYS A 232 LEU A 235 1 O CYS A 232 N GLY A 178 SHEET 5 B 7 ALA A 259 ASN A 263 1 O PHE A 260 N VAL A 233 SHEET 6 B 7 ILE A 284 LEU A 289 1 O ALA A 288 N ASN A 263 SHEET 7 B 7 LEU A 310 CYS A 312 1 O ILE A 311 N ALA A 287 CISPEP 1 GLU A 295 PRO A 296 0 0.21 CISPEP 2 ILE A 343 PRO A 344 0 -0.12 SITE 1 AC1 37 SER A 100 GLY A 101 THR A 128 ILE A 180 SITE 2 AC1 37 GLY A 181 GLY A 183 ARG A 184 VAL A 185 SITE 3 AC1 37 TYR A 203 ASP A 204 PRO A 205 TYR A 206 SITE 4 AC1 37 HIS A 236 CYS A 237 GLY A 238 ASN A 240 SITE 5 AC1 37 ASN A 243 THR A 264 ALA A 265 ARG A 266 SITE 6 AC1 37 ASP A 290 VAL A 291 HIS A 315 ALA A 317 SITE 7 AC1 37 TRP A 318 HOH A2008 HOH A2011 HOH A2012 SITE 8 AC1 37 HOH A2014 HOH A2059 HOH A2086 HOH A2192 SITE 9 AC1 37 HOH A2264 HOH A2347 HOH A2349 HOH A2360 SITE 10 AC1 37 ACY A4000 SITE 1 AC2 8 ARG A 97 SER A 100 GLY A 101 ARG A 266 SITE 2 AC2 8 HIS A 315 NAD A1000 HOH A2349 HOH A2354 CRYST1 89.100 89.100 164.000 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011223 0.006480 0.000000 0.00000 SCALE2 0.000000 0.012960 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006098 0.00000