PDB Short entry for 1N5Y HEADER TRANSFERASE/IMMUNE SYSTEM/DNA 07-NOV-02 1N5Y TITLE HIV-1 REVERSE TRANSCRIPTASE CROSSLINKED TO POST-TRANSLOCATION AZTMP- TITLE 2 TERMINATED DNA (COMPLEX P) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*AP*TP*GP*C*TP*AP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP* COMPND 3 GP*GP*GP*AP*CP*TP*GP*TP*G)-3'; COMPND 4 CHAIN: T; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: DNA TEMPLATE; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*A*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG) COMPND 9 P*CP*GP*CP*CP*(ATM))-3'; COMPND 10 CHAIN: P; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: DNA PRIMER; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: REVERSE TRANSCRIPTASE; COMPND 15 CHAIN: A; COMPND 16 SYNONYM: HIV-1 RT; COMPND 17 EC: 2.7.7.49; COMPND 18 ENGINEERED: YES; COMPND 19 MUTATION: YES; COMPND 20 OTHER_DETAILS: P66; COMPND 21 MOL_ID: 4; COMPND 22 MOLECULE: REVERSE TRANSCRIPTASE; COMPND 23 CHAIN: B; COMPND 24 SYNONYM: HIV-1 RT; COMPND 25 EC: 2.7.7.49; COMPND 26 ENGINEERED: YES; COMPND 27 MUTATION: YES; COMPND 28 OTHER_DETAILS: P51; COMPND 29 MOL_ID: 5; COMPND 30 MOLECULE: MONOCLONAL ANTIBODY (LIGHT CHAIN); COMPND 31 CHAIN: L; COMPND 32 FRAGMENT: FAB 28; COMPND 33 MOL_ID: 6; COMPND 34 MOLECULE: MONOCLONAL ANTIBODY (HEAVY CHAIN); COMPND 35 CHAIN: H; COMPND 36 FRAGMENT: FAB 28 SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 7 ORGANISM_TAXID: 11676; SOURCE 8 GENE: POL; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 4; SOURCE 12 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 13 ORGANISM_TAXID: 11676; SOURCE 14 GENE: POL; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 MOL_ID: 5; SOURCE 18 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 19 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 20 ORGANISM_TAXID: 10090; SOURCE 21 MOL_ID: 6; SOURCE 22 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 23 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 24 ORGANISM_TAXID: 10090 KEYWDS HIV, TRANSLOCATION, NUCLEOTIDE EXCISION, DRUG RESISTANCE, COMPLEX P, KEYWDS 2 TRANSFERASE-IMMUNE SYSTEM-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.G.SARAFIANOS,A.D.CLARK JR.,K.DAS,S.TUSKE,J.J.BIRKTOFT, AUTHOR 2 P.ILANKUMARAN,A.R.RAMESHA,J.M.SAYER,D.M.JERINA,P.L.BOYER,S.H.HUGHES, AUTHOR 3 E.ARNOLD REVDAT 3 27-OCT-21 1N5Y 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1N5Y 1 VERSN REVDAT 1 28-JAN-03 1N5Y 0 JRNL AUTH S.G.SARAFIANOS,A.D.CLARK JR.,K.DAS,S.TUSKE,J.J.BIRKTOFT, JRNL AUTH 2 P.ILANKUMARAN,A.R.RAMESHA,J.M.SAYER,D.M.JERINA,P.L.BOYER, JRNL AUTH 3 S.H.HUGHES,E.ARNOLD JRNL TITL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE WITH JRNL TITL 2 PRE-TRANSLOCATION AND POST-TRANSLOCATION AZTMP-TERMINATED JRNL TITL 3 DNA JRNL REF EMBO J. V. 21 6614 2002 JRNL REFN ISSN 0261-4189 JRNL PMID 12456667 JRNL DOI 10.1093/EMBOJ/CDF637 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 58391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2376 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.21 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4100 REMARK 3 BIN R VALUE (WORKING SET) : 0.3990 REMARK 3 BIN FREE R VALUE : 0.4190 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 172 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.032 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 11344 REMARK 3 NUCLEIC ACID ATOMS : 840 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.50 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : 1.420 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.24 REMARK 3 BSOL : 27.41 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : AZT.PARAM REMARK 3 PARAMETER FILE 4 : DNA-RNA.PARAM REMARK 3 PARAMETER FILE 5 : &_1_PARAMETER_INFILE_5 REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : AZT.TOP REMARK 3 TOPOLOGY FILE 4 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 5 : &_1_TOPOLOGY_INFILE_5 REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1N5Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-02. REMARK 100 THE DEPOSITION ID IS D_1000017559. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-00 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61682 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.40000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CACODYLATE, SAS, PH 5.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -Y,-X,-Z+1/3 REMARK 290 5555 -X+Y,Y,-Z+2/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 147.41333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.70667 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 73.70667 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 147.41333 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, P, A, B, L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DA T 701 REMARK 465 DT T 702 REMARK 465 DG T 703 REMARK 465 DC T 704 REMARK 465 DT T 726 REMARK 465 DG T 727 REMARK 465 DA P 802 REMARK 465 GLU B 430 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT T 705 P OP1 OP2 REMARK 470 DC P 803 P OP1 OP2 REMARK 470 ARG A 211 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 238 CG CD CE NZ REMARK 470 ARG A 284 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 LEU A 301 CG CD1 CD2 REMARK 470 GLU A 302 CG CD OE1 OE2 REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 LYS A 424 CG CD CE NZ REMARK 470 GLN A 524 CG CD OE1 NE2 REMARK 470 LYS A 540 CG CD CE NZ REMARK 470 ARG A 557 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 558 CG CD CE NZ REMARK 470 LYS B 281 CG CD CE NZ REMARK 470 GLU B 297 CG CD OE1 OE2 REMARK 470 GLU B 298 CG CD OE1 OE2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ARG A 557 REMARK 475 LYS A 558 REMARK 475 LEU B 429 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 336 CG CD OE1 NE2 REMARK 480 GLN B 334 CA CB CG CD OE1 NE2 REMARK 480 LEU B 425 CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N6 DA T 722 O4 DT P 806 2.15 REMARK 500 N6 DA T 716 O4 DT P 812 2.16 REMARK 500 OE1 GLU A 478 OD1 ASP A 498 2.17 REMARK 500 O VAL B 423 N LEU B 425 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD1 ILE B 2 CD1 ILE B 2 6565 1.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC T 709 N1 DC T 709 C2 -0.063 REMARK 500 DC T 711 N1 DC T 711 C2 -0.073 REMARK 500 DA T 716 C5 DA T 716 C6 0.058 REMARK 500 DG T 720 C5 DG T 720 C6 0.160 REMARK 500 DG T 720 C6 DG T 720 O6 0.057 REMARK 500 DG T 721 C5 DG T 721 C6 0.120 REMARK 500 DC T 723 N1 DC T 723 C2 -0.063 REMARK 500 DT T 724 N1 DT T 724 C2 0.063 REMARK 500 DT P 806 C2 DT P 806 N3 -0.075 REMARK 500 DT P 806 C4 DT P 806 C5 0.166 REMARK 500 DC P 808 N1 DC P 808 C2 0.083 REMARK 500 DC P 808 C4 DC P 808 C5 0.052 REMARK 500 DC P 809 N1 DC P 809 C2 0.083 REMARK 500 DC P 809 C4 DC P 809 C5 0.056 REMARK 500 DT P 810 C4 DT P 810 C5 0.054 REMARK 500 DT P 812 C4 DT P 812 C5 0.172 REMARK 500 DT P 813 C4 DT P 813 C5 0.098 REMARK 500 DG P 816 O3' DG P 816 C3' -0.049 REMARK 500 DG P 816 C5 DG P 816 C6 0.094 REMARK 500 DC P 818 P DC P 818 OP1 -0.116 REMARK 500 DC P 818 C2' DC P 818 C1' 0.072 REMARK 500 DC P 818 O3' DC P 818 C3' 0.083 REMARK 500 DC P 818 N1 DC P 818 C6 -0.046 REMARK 500 DC P 818 C2 DC P 818 N3 0.049 REMARK 500 DC P 818 N3 DC P 818 C4 0.072 REMARK 500 DC P 818 O3' DG P 819 P 0.080 REMARK 500 DC P 820 N3 DC P 820 C4 0.055 REMARK 500 DC P 821 O3' DC P 821 C3' 0.102 REMARK 500 DC P 821 O3' ATM P 822 P -0.152 REMARK 500 GLU A 248 CD GLU A 248 OE2 0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC T 709 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG T 710 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC T 711 N1 - C1' - C2' ANGL. DEV. = 13.3 DEGREES REMARK 500 DC T 711 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC T 712 N1 - C1' - C2' ANGL. DEV. = 11.9 DEGREES REMARK 500 DC T 712 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC T 713 N1 - C1' - C2' ANGL. DEV. = 13.8 DEGREES REMARK 500 DA T 716 N9 - C1' - C2' ANGL. DEV. = 8.7 DEGREES REMARK 500 DC T 717 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG T 720 N1 - C6 - O6 ANGL. DEV. = -4.3 DEGREES REMARK 500 DG T 720 C5 - C6 - O6 ANGL. DEV. = 5.0 DEGREES REMARK 500 DG T 721 N1 - C6 - O6 ANGL. DEV. = -4.4 DEGREES REMARK 500 DG T 721 C5 - C6 - O6 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC T 723 O4' - C1' - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 DC T 723 N3 - C4 - N4 ANGL. DEV. = 4.7 DEGREES REMARK 500 DC T 723 C5 - C4 - N4 ANGL. DEV. = -4.5 DEGREES REMARK 500 DT P 806 N3 - C2 - O2 ANGL. DEV. = -5.0 DEGREES REMARK 500 DT P 806 N3 - C4 - O4 ANGL. DEV. = -10.5 DEGREES REMARK 500 DT P 806 C5 - C4 - O4 ANGL. DEV. = 10.5 DEGREES REMARK 500 DT P 806 C4 - C5 - C7 ANGL. DEV. = 6.4 DEGREES REMARK 500 DT P 806 C6 - C5 - C7 ANGL. DEV. = -4.0 DEGREES REMARK 500 DC P 808 N3 - C2 - O2 ANGL. DEV. = -4.2 DEGREES REMARK 500 DC P 808 N3 - C4 - N4 ANGL. DEV. = -5.8 DEGREES REMARK 500 DC P 808 C5 - C4 - N4 ANGL. DEV. = 5.5 DEGREES REMARK 500 DC P 809 N3 - C4 - N4 ANGL. DEV. = -5.6 DEGREES REMARK 500 DC P 809 C5 - C4 - N4 ANGL. DEV. = 5.3 DEGREES REMARK 500 DT P 812 N1 - C1' - C2' ANGL. DEV. = 9.4 DEGREES REMARK 500 DT P 812 N3 - C4 - O4 ANGL. DEV. = -8.4 DEGREES REMARK 500 DT P 812 C5 - C4 - O4 ANGL. DEV. = 8.9 DEGREES REMARK 500 DT P 812 C4 - C5 - C7 ANGL. DEV. = 6.6 DEGREES REMARK 500 DT P 812 C6 - C5 - C7 ANGL. DEV. = -4.6 DEGREES REMARK 500 DT P 813 N3 - C4 - O4 ANGL. DEV. = -4.5 DEGREES REMARK 500 DT P 813 C5 - C4 - O4 ANGL. DEV. = 5.8 DEGREES REMARK 500 DT P 813 C4 - C5 - C7 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG P 815 O4' - C1' - C2' ANGL. DEV. = 4.2 DEGREES REMARK 500 DG P 815 N9 - C1' - C2' ANGL. DEV. = 20.9 DEGREES REMARK 500 DG P 815 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG P 816 O5' - P - OP1 ANGL. DEV. = 7.3 DEGREES REMARK 500 DG P 816 N9 - C1' - C2' ANGL. DEV. = 21.2 DEGREES REMARK 500 DG P 816 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG P 816 N1 - C2 - N2 ANGL. DEV. = -5.7 DEGREES REMARK 500 DC P 818 O4' - C1' - N1 ANGL. DEV. = 5.8 DEGREES REMARK 500 DC P 820 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 ATM P 822 O3' - P - O5' ANGL. DEV. = 16.0 DEGREES REMARK 500 ATM P 822 O3' - P - OP1 ANGL. DEV. = 10.8 DEGREES REMARK 500 PRO B 95 C - N - CA ANGL. DEV. = 11.5 DEGREES REMARK 500 PRO B 217 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 PRO B 225 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 TYR B 427 N - CA - C ANGL. DEV. = 20.2 DEGREES REMARK 500 CYS H 22 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 52 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 22 159.28 -36.92 REMARK 500 PHE A 116 12.87 -59.37 REMARK 500 ASP A 123 5.20 -68.17 REMARK 500 PRO A 133 148.75 -35.37 REMARK 500 ASN A 137 15.15 -38.63 REMARK 500 THR A 139 150.35 -21.27 REMARK 500 SER A 156 -53.82 -28.63 REMARK 500 ASP A 177 56.46 -112.04 REMARK 500 MET A 184 -127.51 55.20 REMARK 500 ASP A 185 49.48 -93.76 REMARK 500 ASP A 192 35.43 -97.37 REMARK 500 ILE A 195 -11.66 -41.20 REMARK 500 THR A 216 79.44 -103.24 REMARK 500 PRO A 217 173.33 -53.96 REMARK 500 LYS A 219 49.82 -149.30 REMARK 500 LYS A 223 35.35 38.91 REMARK 500 MET A 230 15.67 58.23 REMARK 500 PRO A 243 140.48 -24.94 REMARK 500 LYS A 249 162.25 -37.32 REMARK 500 VAL A 254 -78.03 -31.43 REMARK 500 ILE A 270 -40.41 -132.54 REMARK 500 PRO A 272 143.41 -35.51 REMARK 500 VAL A 276 -16.96 -146.08 REMARK 500 GLN A 278 -81.08 -45.28 REMARK 500 ARG A 284 151.80 -42.06 REMARK 500 THR A 286 39.90 -86.97 REMARK 500 LYS A 287 172.43 -46.66 REMARK 500 ALA A 288 -142.78 -100.12 REMARK 500 GLU A 302 -75.62 -53.32 REMARK 500 ARG A 307 -39.33 -38.89 REMARK 500 PRO A 321 -78.22 -47.47 REMARK 500 ASP A 324 164.13 -48.91 REMARK 500 GLN A 332 -158.71 -143.37 REMARK 500 PRO A 345 -79.32 -33.27 REMARK 500 ALA A 355 -3.92 -144.15 REMARK 500 ASN A 363 -159.14 -126.96 REMARK 500 GLU A 378 -7.75 -55.25 REMARK 500 SER A 379 -60.90 -98.25 REMARK 500 ILE A 380 -39.92 -32.30 REMARK 500 ILE A 393 109.65 -178.69 REMARK 500 GLU A 399 -32.13 -39.63 REMARK 500 TRP A 401 -71.26 -61.57 REMARK 500 GLU A 413 127.07 -31.35 REMARK 500 THR A 419 85.09 -162.76 REMARK 500 LYS A 424 132.67 -172.68 REMARK 500 TYR A 427 -165.38 -116.72 REMARK 500 GLN A 428 112.43 -175.41 REMARK 500 LEU A 429 -179.91 -64.24 REMARK 500 ASP A 443 173.44 179.57 REMARK 500 GLU A 449 -3.88 -56.41 REMARK 500 REMARK 500 THIS ENTRY HAS 180 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 354 0.09 SIDE CHAIN REMARK 500 TYR L 49 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 443 OD1 REMARK 620 2 GLU A 478 OE2 68.5 REMARK 620 3 GLU A 478 OE1 51.5 43.2 REMARK 620 4 ASP A 498 OD2 70.9 102.1 59.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HYS RELATED DB: PDB REMARK 900 HIV-1 RT WITH RNA:DNA REMARK 900 RELATED ID: 2HMI RELATED DB: PDB REMARK 900 HIV-1 RT WITH DNA:DNA REMARK 900 RELATED ID: 1RTD RELATED DB: PDB REMARK 900 HIV-1 RT WITH DNA:DNA AND DNTP DBREF 1N5Y A 1 558 UNP P03366 POL_HV1B1 168 725 DBREF 1N5Y B 1 430 UNP P03366 POL_HV1B1 168 597 DBREF 1N5Y T 701 727 PDB 1N5Y 1N5Y 701 727 DBREF 1N5Y P 802 822 PDB 1N5Y 1N5Y 802 822 DBREF 1N5Y L 1 211 PDB 1N5Y 1N5Y 1 211 DBREF 1N5Y H 1 225 PDB 1N5Y 1N5Y 1 225 SEQADV 1N5Y CYS A 258 UNP P03366 GLN 425 ENGINEERED MUTATION SEQADV 1N5Y SER A 280 UNP P03366 CYS 447 ENGINEERED MUTATION SEQADV 1N5Y SER B 280 UNP P03366 CYS 447 ENGINEERED MUTATION SEQRES 1 T 27 DA DT DG DC DT DA DG DG DC DG DC DC DC SEQRES 2 T 27 DG DA DA DC DA DG DG DG DA DC DT DG DT SEQRES 3 T 27 DG SEQRES 1 P 21 DA DC DA DG DT DC DC DC DT DG DT DT DC SEQRES 2 P 21 DG DG MRG DC DG DC DC ATM SEQRES 1 A 558 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 A 558 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 A 558 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 A 558 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 A 558 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 A 558 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 A 558 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 A 558 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 A 558 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 A 558 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 A 558 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 A 558 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 A 558 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 A 558 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 A 558 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 A 558 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 A 558 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 A 558 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 A 558 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 A 558 GLU LYS ASP SER TRP THR VAL ASN ASP ILE CYS LYS LEU SEQRES 21 A 558 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 A 558 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 A 558 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 A 558 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 A 558 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 A 558 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 A 558 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 A 558 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 A 558 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 A 558 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 A 558 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 A 558 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 A 558 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN LEU SEQRES 34 A 558 GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE TYR VAL SEQRES 35 A 558 ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY LYS ALA SEQRES 36 A 558 GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL VAL PRO SEQRES 37 A 558 LEU THR ASN THR THR ASN GLN LYS THR GLU LEU GLN ALA SEQRES 38 A 558 ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU VAL ASN SEQRES 39 A 558 ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE ILE GLN SEQRES 40 A 558 ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL ASN GLN SEQRES 41 A 558 ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL TYR LEU SEQRES 42 A 558 ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY ASN GLU SEQRES 43 A 558 GLN VAL ASP LYS LEU VAL SER ALA GLY ILE ARG LYS SEQRES 1 B 430 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 B 430 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 B 430 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 B 430 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 B 430 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 B 430 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 B 430 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 B 430 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 B 430 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 B 430 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 B 430 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 B 430 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 B 430 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 B 430 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 B 430 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 B 430 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 B 430 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 B 430 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 B 430 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 B 430 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 B 430 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 B 430 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 B 430 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 B 430 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 B 430 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 B 430 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 B 430 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 B 430 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 B 430 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 B 430 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 B 430 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 B 430 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 B 430 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN LEU SEQRES 34 B 430 GLU SEQRES 1 L 211 ASP ILE GLN MET THR GLN THR THR SER SER LEU SER ALA SEQRES 2 L 211 SER LEU GLY ASP ARG VAL THR ILE SER CYS SER ALA SER SEQRES 3 L 211 GLN ASP ILE SER SER TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 L 211 PRO GLU GLY THR VAL LYS LEU LEU ILE TYR TYR THR SER SEQRES 5 L 211 SER LEU HIS SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 211 GLY SER GLY THR ASP TYR SER LEU THR ILE SER ASN LEU SEQRES 7 L 211 GLU PRO GLU ASP ILE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 L 211 SER LYS PHE PRO TRP THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 211 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 211 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 211 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 211 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 211 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 211 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 211 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 211 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 211 PHE ASN ARG SEQRES 1 H 225 GLN ILE THR LEU LYS GLU SER GLY PRO GLY ILE VAL GLN SEQRES 2 H 225 PRO SER GLN PRO PHE ARG LEU THR CYS THR PHE SER GLY SEQRES 3 H 225 PHE SER LEU SER THR SER GLY ILE GLY VAL THR TRP ILE SEQRES 4 H 225 ARG GLN PRO SER GLY LYS GLY LEU GLU TRP LEU ALA THR SEQRES 5 H 225 ILE TRP TRP ASP ASP ASP ASN ARG TYR ASN PRO SER LEU SEQRES 6 H 225 LYS SER ARG LEU THR VAL SER LYS ASP THR SER ASN ASN SEQRES 7 H 225 GLN ALA PHE LEU ASN MET MET THR VAL GLU THR ALA ASP SEQRES 8 H 225 THR ALA ILE TYR TYR CYS ALA GLN SER ALA ILE THR SER SEQRES 9 H 225 VAL THR ASP SER ALA MET ASP HIS TRP GLY GLN GLY THR SEQRES 10 H 225 SER VAL THR VAL SER SER ALA LYS THR THR PRO PRO SER SEQRES 11 H 225 VAL TYR PRO LEU ALA PRO GLY SER ALA ALA GLN THR ASN SEQRES 12 H 225 SER MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE SEQRES 13 H 225 PRO GLU PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SEQRES 14 H 225 SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 225 ASP LEU TYR THR LEU SER SER SER VAL THR VAL PRO SER SEQRES 16 H 225 SER THR TRP PRO SER GLU THR VAL THR CYS ASN VAL ALA SEQRES 17 H 225 HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL SEQRES 18 H 225 PRO ALA ASP CYS MODRES 1N5Y MRG P 817 DG MODRES 1N5Y ATM P 822 DT HET MRG P 817 26 HET ATM P 822 22 HET MG A1001 1 HETNAM MRG N2-(3-MERCAPTOPROPYL)-2'-DEOXYGUANOSINE-5'- HETNAM 2 MRG MONOPHOSPHATE HETNAM ATM 3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 MRG C13 H20 N5 O7 P S FORMUL 2 ATM C10 H14 N5 O7 P FORMUL 7 MG MG 2+ HELIX 1 1 THR A 27 GLU A 44 1 18 HELIX 2 2 PHE A 77 THR A 84 1 8 HELIX 3 3 HIS A 96 LEU A 100 5 5 HELIX 4 4 ALA A 114 VAL A 118 5 5 HELIX 5 5 ASP A 121 ALA A 129 5 9 HELIX 6 6 GLY A 155 ASN A 175 1 21 HELIX 7 7 GLU A 194 LEU A 210 1 17 HELIX 8 8 THR A 253 GLN A 269 1 17 HELIX 9 9 VAL A 276 LEU A 283 1 8 HELIX 10 11 ASN A 363 GLY A 384 1 22 HELIX 11 12 GLN A 394 TYR A 405 1 12 HELIX 12 13 THR A 473 ALA A 485 1 13 HELIX 13 14 SER A 499 ALA A 508 1 10 HELIX 14 15 GLU A 516 LYS A 528 1 13 HELIX 15 16 ILE A 542 SER A 553 1 12 HELIX 16 17 THR B 27 GLU B 44 1 18 HELIX 17 18 PHE B 77 THR B 84 1 8 HELIX 18 19 PRO B 97 LYS B 101 5 5 HELIX 19 20 GLY B 112 PHE B 116 5 5 HELIX 20 21 ASP B 121 ALA B 129 5 9 HELIX 21 22 SER B 134 GLU B 138 5 5 HELIX 22 23 GLY B 155 PHE B 160 1 6 HELIX 23 24 PHE B 160 ASN B 175 1 16 HELIX 24 25 GLU B 194 ARG B 211 1 18 HELIX 25 26 PHE B 227 TYR B 232 5 6 HELIX 26 27 VAL B 254 TYR B 271 1 18 HELIX 27 29 ALA B 299 LEU B 310 1 12 HELIX 28 30 ASN B 363 TRP B 383 1 21 HELIX 29 31 GLN B 394 TRP B 406 1 13 HELIX 30 32 SER L 121 SER L 127 1 7 HELIX 31 33 GLU L 185 HIS L 189 5 5 HELIX 32 34 LEU H 65 SER H 67 5 3 HELIX 33 35 THR H 75 ASN H 77 5 3 HELIX 34 36 GLU H 88 THR H 92 5 5 HELIX 35 37 SER H 166 SER H 168 5 3 SHEET 1 A 3 ILE A 47 LYS A 49 0 SHEET 2 A 3 ILE A 142 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 3 A 3 PHE A 130 ILE A 132 -1 N PHE A 130 O TYR A 144 SHEET 1 B 2 VAL A 60 LYS A 65 0 SHEET 2 B 2 LYS A 70 VAL A 75 -1 O LYS A 70 N LYS A 65 SHEET 1 C 4 VAL A 179 GLN A 182 0 SHEET 2 C 4 ASP A 186 SER A 191 -1 O TYR A 188 N TYR A 181 SHEET 3 C 4 SER A 105 ASP A 110 -1 N THR A 107 O VAL A 189 SHEET 4 C 4 HIS A 221 GLN A 222 -1 O HIS A 221 N VAL A 108 SHEET 1 D 3 PHE A 227 TRP A 229 0 SHEET 2 D 3 TYR A 232 LEU A 234 -1 O LEU A 234 N PHE A 227 SHEET 3 D 3 TRP A 239 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 E 5 ASN A 348 LYS A 353 0 SHEET 2 E 5 TRP A 337 TYR A 342 -1 N ILE A 341 O LEU A 349 SHEET 3 E 5 ILE A 326 LYS A 331 -1 N ILE A 326 O TYR A 342 SHEET 4 E 5 LYS A 388 LEU A 391 1 O LYS A 388 N ALA A 327 SHEET 5 E 5 TRP A 414 PHE A 416 1 O GLU A 415 N PHE A 389 SHEET 1 F 5 GLN A 464 THR A 470 0 SHEET 2 F 5 LEU A 452 VAL A 458 -1 N GLY A 453 O LEU A 469 SHEET 3 F 5 THR A 439 GLY A 444 -1 N TYR A 441 O VAL A 458 SHEET 4 F 5 GLU A 492 THR A 497 1 O ASN A 494 N PHE A 440 SHEET 5 F 5 LYS A 530 TRP A 535 1 O TYR A 532 N ILE A 495 SHEET 1 G 3 ILE B 47 ILE B 50 0 SHEET 2 G 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 G 3 PHE B 130 ILE B 132 -1 N PHE B 130 O TYR B 144 SHEET 1 H 2 VAL B 60 LYS B 64 0 SHEET 2 H 2 TRP B 71 VAL B 75 -1 O LEU B 74 N PHE B 61 SHEET 1 I 3 SER B 105 ASP B 110 0 SHEET 2 I 3 ASP B 186 SER B 191 -1 O VAL B 189 N THR B 107 SHEET 3 I 3 VAL B 179 TYR B 183 -1 N TYR B 181 O TYR B 188 SHEET 1 J 5 LYS B 347 GLY B 352 0 SHEET 2 J 5 TRP B 337 GLU B 344 -1 N ILE B 341 O LEU B 349 SHEET 3 J 5 ILE B 326 LYS B 331 -1 N ILE B 326 O TYR B 342 SHEET 4 J 5 LYS B 388 LEU B 391 1 O LYS B 390 N ALA B 327 SHEET 5 J 5 TRP B 414 PHE B 416 1 O GLU B 415 N LEU B 391 SHEET 1 K 5 SER L 53 LEU L 54 0 SHEET 2 K 5 VAL L 44 TYR L 49 -1 N TYR L 49 O SER L 53 SHEET 3 K 5 LEU L 33 GLN L 38 -1 N TRP L 35 O ILE L 48 SHEET 4 K 5 THR L 85 GLN L 90 -1 O TYR L 87 N TYR L 36 SHEET 5 K 5 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 L 6 SER L 53 LEU L 54 0 SHEET 2 L 6 VAL L 44 TYR L 49 -1 N TYR L 49 O SER L 53 SHEET 3 L 6 LEU L 33 GLN L 38 -1 N TRP L 35 O ILE L 48 SHEET 4 L 6 THR L 85 GLN L 90 -1 O TYR L 87 N TYR L 36 SHEET 5 L 6 THR L 102 LEU L 104 -1 O THR L 102 N TYR L 86 SHEET 6 L 6 SER L 10 LEU L 11 1 N LEU L 11 O LYS L 103 SHEET 1 M 3 VAL L 19 SER L 24 0 SHEET 2 M 3 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 3 M 3 PHE L 62 SER L 67 -1 N SER L 65 O SER L 72 SHEET 1 N 4 THR L 114 PHE L 118 0 SHEET 2 N 4 ALA L 130 PHE L 139 -1 O PHE L 135 N SER L 116 SHEET 3 N 4 TYR L 173 LEU L 181 -1 O LEU L 179 N VAL L 132 SHEET 4 N 4 VAL L 159 TRP L 163 -1 N LEU L 160 O THR L 178 SHEET 1 O 4 SER L 153 ARG L 155 0 SHEET 2 O 4 ASN L 145 ILE L 150 -1 N ILE L 150 O SER L 153 SHEET 3 O 4 SER L 191 THR L 197 -1 O THR L 197 N ASN L 145 SHEET 4 O 4 ILE L 205 ASN L 210 -1 O ILE L 205 N ALA L 196 SHEET 1 P 4 THR H 3 SER H 7 0 SHEET 2 P 4 PHE H 18 SER H 25 -1 O THR H 21 N SER H 7 SHEET 3 P 4 GLN H 79 MET H 84 -1 O ALA H 80 N CYS H 22 SHEET 4 P 4 LEU H 69 ASP H 74 -1 N THR H 70 O ASN H 83 SHEET 1 Q 6 ILE H 11 VAL H 12 0 SHEET 2 Q 6 THR H 117 VAL H 121 1 O THR H 120 N VAL H 12 SHEET 3 Q 6 ALA H 93 ALA H 98 -1 N ALA H 93 O VAL H 119 SHEET 4 Q 6 GLY H 35 GLN H 41 -1 N THR H 37 O ALA H 98 SHEET 5 Q 6 GLU H 48 TRP H 54 -1 O ALA H 51 N TRP H 38 SHEET 6 Q 6 ARG H 60 TYR H 61 -1 O ARG H 60 N THR H 52 SHEET 1 R 2 ALA H 101 SER H 104 0 SHEET 2 R 2 ASP H 107 ALA H 109 -1 O ALA H 109 N ALA H 101 SHEET 1 S 4 SER H 130 LEU H 134 0 SHEET 2 S 4 THR H 147 TYR H 155 -1 O LEU H 151 N TYR H 132 SHEET 3 S 4 TYR H 185 THR H 192 -1 O VAL H 191 N LEU H 148 SHEET 4 S 4 VAL H 173 THR H 175 -1 N HIS H 174 O SER H 190 SHEET 1 T 4 SER H 130 LEU H 134 0 SHEET 2 T 4 THR H 147 TYR H 155 -1 O LEU H 151 N TYR H 132 SHEET 3 T 4 TYR H 185 THR H 192 -1 O VAL H 191 N LEU H 148 SHEET 4 T 4 VAL H 179 LEU H 180 -1 N VAL H 179 O THR H 186 SHEET 1 U 3 THR H 161 TRP H 164 0 SHEET 2 U 3 THR H 204 HIS H 209 -1 O ASN H 206 N THR H 163 SHEET 3 U 3 THR H 214 LYS H 219 -1 O VAL H 216 N VAL H 207 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.05 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.04 SSBOND 3 CYS H 22 CYS H 97 1555 1555 2.07 SSBOND 4 CYS H 150 CYS H 205 1555 1555 2.04 LINK O3' DG P 816 P MRG P 817 1555 1555 1.61 LINK O3' MRG P 817 P DC P 818 1555 1555 1.60 LINK S24 MRG P 817 SG CYS A 258 1555 1555 1.82 LINK O3' DC P 821 P ATM P 822 1555 1555 1.46 LINK OD1 ASP A 443 MG MG A1001 1555 1555 2.69 LINK OE2 GLU A 478 MG MG A1001 1555 1555 3.12 LINK OE1 GLU A 478 MG MG A1001 1555 1555 2.57 LINK OD2 ASP A 498 MG MG A1001 1555 1555 2.28 CISPEP 1 PRO A 225 PRO A 226 0 -7.84 CISPEP 2 PRO A 420 PRO A 421 0 4.45 CISPEP 3 PHE L 94 PRO L 95 0 -0.41 CISPEP 4 TYR L 140 PRO L 141 0 -0.14 CISPEP 5 PHE H 156 PRO H 157 0 0.14 CISPEP 6 GLU H 158 PRO H 159 0 -0.43 CISPEP 7 TRP H 198 PRO H 199 0 3.47 SITE 1 AC1 3 ASP A 443 GLU A 478 ASP A 498 CRYST1 166.700 166.700 221.120 90.00 90.00 120.00 P 32 1 2 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005999 0.003463 0.000000 0.00000 SCALE2 0.000000 0.006927 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004522 0.00000