PDB Short entry for 1N89 HEADER LIPID TRANSPORT 20-NOV-02 1N89 TITLE SOLUTION STRUCTURE OF A LIGANDED TYPE 2 WHEAT NON-SPECIFIC LIPID TITLE 2 TRANSFER PROTEIN CAVEAT 1N89 PGM A 68 HAS WRONG CHIRALITY AT ATOM C8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPID TRANSFER PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRITICUM TURGIDUM SUBSP. DURUM; SOURCE 3 ORGANISM_COMMON: DURUM WHEAT; SOURCE 4 ORGANISM_TAXID: 4567; SOURCE 5 STRAIN: SUBSP. DURUM; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: GS115 KEYWDS LIPID TRANSFER PROTEIN, LIPID TRANSPORT EXPDTA SOLUTION NMR NUMMDL 9 MDLTYP MINIMIZED AVERAGE AUTHOR J.L.PONS,F.DE LAMOTTE,M.F.GAUTIER,M.A.DELSUC REVDAT 6 14-JUN-23 1N89 1 REMARK REVDAT 5 05-FEB-20 1N89 1 CAVEAT REMARK REVDAT 4 21-APR-09 1N89 1 REMARK REVDAT 3 24-FEB-09 1N89 1 VERSN REVDAT 2 14-DEC-04 1N89 1 JRNL REVDAT 1 18-MAR-03 1N89 0 JRNL AUTH J.L.PONS,F.DE LAMOTTE,M.F.GAUTIER,M.A.DELSUC JRNL TITL REFINED SOLUTION STRUCTURE OF A LIGANDED TYPE 2 WHEAT JRNL TITL 2 NONSPECIFIC LIPID TRANSFER PROTEIN. JRNL REF J.BIOL.CHEM. V. 278 14249 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12525478 JRNL DOI 10.1074/JBC.M211683200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : UXNMR, CNS REMARK 3 AUTHORS : BRUNGER ET AL. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1N89 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-02. REMARK 100 THE DEPOSITION ID IS D_1000017642. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295.2 REMARK 210 PH : 3.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.8 MMOL 15N-LTP WITH 1.5 EQ PGM REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY; 2D NOESY; 2D TOCSY; REMARK 210 3D_15N-SEPARATED_NOESY; 3D_15N- REMARK 210 HSQC-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : GIFA V4 REMARK 210 METHOD USED : ANNEALING PROTOCOL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 9 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 2 93.88 59.94 REMARK 500 1 SER A 5 -36.00 -149.17 REMARK 500 1 LEU A 15 -80.83 -73.70 REMARK 500 1 SER A 16 -75.32 -60.22 REMARK 500 1 ALA A 18 -76.94 -58.22 REMARK 500 1 PRO A 20 -171.99 -53.71 REMARK 500 1 SER A 21 140.99 -174.39 REMARK 500 1 GLN A 31 -74.17 -81.93 REMARK 500 1 GLN A 32 19.62 49.01 REMARK 500 1 LEU A 62 -60.03 -109.78 REMARK 500 1 PRO A 65 -160.42 -57.19 REMARK 500 2 LEU A 15 -79.50 -74.06 REMARK 500 2 ALA A 18 -79.10 -57.63 REMARK 500 2 PRO A 20 -174.69 -69.08 REMARK 500 2 SER A 21 138.57 -173.41 REMARK 500 2 GLN A 31 -72.66 -81.36 REMARK 500 2 GLN A 32 20.68 47.30 REMARK 500 2 PRO A 42 38.16 -82.09 REMARK 500 2 ARG A 49 31.06 -80.45 REMARK 500 2 PRO A 65 31.71 -77.74 REMARK 500 3 GLN A 3 -56.45 -156.64 REMARK 500 3 LEU A 15 -77.85 -68.11 REMARK 500 3 SER A 16 -70.20 -54.01 REMARK 500 3 ALA A 18 -77.83 -58.60 REMARK 500 3 LYS A 19 143.52 -171.29 REMARK 500 3 SER A 21 -162.61 -166.32 REMARK 500 3 GLN A 31 -71.86 -81.07 REMARK 500 3 GLN A 32 20.03 48.28 REMARK 500 3 TYR A 44 -75.93 -89.71 REMARK 500 3 ARG A 49 31.00 -80.67 REMARK 500 3 LEU A 62 -92.32 -134.13 REMARK 500 3 PRO A 65 32.28 -81.83 REMARK 500 4 CYS A 2 99.35 59.99 REMARK 500 4 GLN A 6 48.45 -86.86 REMARK 500 4 LEU A 7 -39.94 -151.99 REMARK 500 4 LEU A 15 -74.38 -65.16 REMARK 500 4 ALA A 18 -77.06 -61.75 REMARK 500 4 PRO A 20 -167.03 -63.50 REMARK 500 4 SER A 21 144.63 -174.71 REMARK 500 4 GLN A 31 -71.60 -81.41 REMARK 500 4 GLN A 32 19.25 48.76 REMARK 500 4 ASP A 41 109.10 -57.44 REMARK 500 4 LEU A 62 -81.00 -123.48 REMARK 500 4 PRO A 65 -160.57 -57.73 REMARK 500 5 LEU A 15 -74.31 -74.61 REMARK 500 5 ALA A 18 -77.62 -67.89 REMARK 500 5 PRO A 20 -164.28 -55.44 REMARK 500 5 SER A 21 136.92 -172.41 REMARK 500 5 GLN A 31 -71.60 -81.09 REMARK 500 5 GLN A 32 21.72 46.39 REMARK 500 REMARK 500 THIS ENTRY HAS 101 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 AUTHOR DETERMINED THE SECONDARY STRUCTURE. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGM A 68 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4977 RELATED DB: BMRB DBREF 1N89 A 1 67 UNP P82900 NLT2G_WHEAT 30 96 SEQRES 1 A 67 ALA CYS GLN ALA SER GLN LEU ALA VAL CYS ALA SER ALA SEQRES 2 A 67 ILE LEU SER GLY ALA LYS PRO SER GLY GLU CYS CYS GLY SEQRES 3 A 67 ASN LEU ARG ALA GLN GLN GLY CYS PHE CYS GLN TYR ALA SEQRES 4 A 67 LYS ASP PRO THR TYR GLY GLN TYR ILE ARG SER PRO HIS SEQRES 5 A 67 ALA ARG ASP THR LEU THR SER CYS GLY LEU ALA VAL PRO SEQRES 6 A 67 HIS CYS HET PGM A 68 32 HETNAM PGM 1-MYRISTOYL-2-HYDROXY-SN-GLYCERO-3-[PHOSPHO-RAC-(1- HETNAM 2 PGM GLYCEROL)] HETSYN PGM LYSOPHOSPHATIDYLGLYCEROL FORMUL 2 PGM C22 H44 O9 P 1- HELIX 1 1 LEU A 7 LEU A 15 1 9 HELIX 2 2 GLY A 22 GLN A 31 1 10 HELIX 3 3 CYS A 34 LYS A 40 1 7 HELIX 4 5 TYR A 44 ARG A 49 1 6 HELIX 5 4 PRO A 51 CYS A 60 1 10 SSBOND 1 CYS A 2 CYS A 34 1555 1555 2.03 SSBOND 2 CYS A 10 CYS A 24 1555 1555 2.03 SSBOND 3 CYS A 25 CYS A 60 1555 1555 2.03 SSBOND 4 CYS A 36 CYS A 67 1555 1555 2.03 SITE 1 AC1 10 LEU A 7 PHE A 35 TYR A 44 TYR A 47 SITE 2 AC1 10 ILE A 48 ARG A 54 LEU A 57 VAL A 64 SITE 3 AC1 10 PRO A 65 HIS A 66 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000