PDB Short entry for 1NBD HEADER REGULATOR 27-NOV-96 1NBD TITLE CFTR NBD1, THEORETICAL MODEL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CFTR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NBD1, FIRST (OR N-TERMINAL) NUCLEOTIDE-BINDING COMPND 5 DOMAIN; COMPND 6 SYNONYM: CFTR NBD1, CYSTIC FIBROSIS TRANSMEMBRANE COMPND 7 CONDUCTANCE REGULATOR NUCLEOTIDE-BINDING DOMAIN 1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN KEYWDS REGULATOR, ATP-BINDING, TRANSMEMBRANE, TRANSPORT, KEYWDS 2 GLYCOPROTEIN, DUPLICATION, IONIC CHANNEL, PHOSPHORYLATION, KEYWDS 3 POLYMORPHISM, DISEASE MUTATION EXPDTA THEORETICAL MODEL AUTHOR P.J.HOEDEMAEKER,A.R.DAVIDSON,D.R.ROSE REVDAT 1 15-MAY-97 1NBD 0 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE MODEL WAS REFINED USING A REMARK 3 COMBINATION OF ENERGY MINIMIZATION IN X-PLOR WITH STANDARD REMARK 3 CHARMM PARAMETERS AND AUTOMATED ROTAMER SEARCHES IN INSIGHT II. REMARK 4 REMARK 4 1NBD COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NULL REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 425 CG OD1 OD2 REMARK 470 ASP A 426 CG OD1 OD2 REMARK 470 SER A 427 OG REMARK 470 LEU A 428 CG CD1 CD2 REMARK 470 PHE A 429 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 430 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 431 OG REMARK 470 ASN A 432 CG OD1 ND2 REMARK 470 PHE A 433 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 434 OG REMARK 470 LEU A 435 CG CD1 CD2 REMARK 470 LEU A 436 CG CD1 CD2 REMARK 470 THR A 438 OG1 CG2 REMARK 470 PRO A 439 CG CD REMARK 470 VAL A 440 CG1 CG2 REMARK 470 LEU A 441 CG CD1 CD2 REMARK 470 LYS A 442 CG CD CE NZ REMARK 470 ASP A 443 CG OD1 OD2 REMARK 470 ILE A 444 CG1 CG2 CD1 REMARK 470 ASN A 445 CG OD1 ND2 REMARK 470 PHE A 446 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 447 CG CD CE NZ REMARK 470 ILE A 448 CG1 CG2 CD1 REMARK 470 GLU A 449 CG CD OE1 OE2 REMARK 470 ARG A 450 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 452 CG CD OE1 NE2 REMARK 470 LEU A 453 CG CD1 CD2 REMARK 470 LEU A 454 CG CD1 CD2 REMARK 470 VAL A 456 CG1 CG2 REMARK 470 SER A 459 OG REMARK 470 THR A 460 OG1 CG2 REMARK 470 LYS A 464 CG CD CE NZ REMARK 470 THR A 465 OG1 CG2 REMARK 470 SER A 466 OG REMARK 470 LEU A 467 CG CD1 CD2 REMARK 470 LEU A 468 CG CD1 CD2 REMARK 470 MET A 469 CG SD CE REMARK 470 MET A 470 CG SD CE REMARK 470 ILE A 471 CG1 CG2 CD1 REMARK 470 MET A 472 CG SD CE REMARK 470 GLU A 474 CG CD OE1 OE2 REMARK 470 LEU A 475 CG CD1 CD2 REMARK 470 GLU A 476 CG CD OE1 OE2 REMARK 470 PRO A 477 CG CD REMARK 470 SER A 478 OG REMARK 470 GLU A 479 CG CD OE1 OE2 REMARK 470 LYS A 481 CG CD CE NZ REMARK 470 ILE A 482 CG1 CG2 CD1 REMARK 470 LYS A 483 CG CD CE NZ REMARK 470 HIS A 484 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 485 OG REMARK 470 ARG A 487 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 488 CG1 CG2 CD1 REMARK 470 SER A 489 OG REMARK 470 PHE A 490 CG CD1 CD2 CE1 CE2 CZ REMARK 470 CYS A 491 SG REMARK 470 SER A 492 OG REMARK 470 GLN A 493 CG CD OE1 NE2 REMARK 470 PHE A 494 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 495 OG REMARK 470 TRP A 496 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 496 CZ3 CH2 REMARK 470 ILE A 497 CG1 CG2 CD1 REMARK 470 MET A 498 CG SD CE REMARK 470 PRO A 499 CG CD REMARK 470 THR A 501 OG1 CG2 REMARK 470 ILE A 502 CG1 CG2 CD1 REMARK 470 LYS A 503 CG CD CE NZ REMARK 470 GLU A 504 CG CD OE1 OE2 REMARK 470 ASN A 505 CG OD1 ND2 REMARK 470 ILE A 506 CG1 CG2 CD1 REMARK 470 ILE A 507 CG1 CG2 CD1 REMARK 470 PHE A 508 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 510 CG1 CG2 REMARK 470 SER A 511 OG REMARK 470 TYR A 512 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 513 CG OD1 OD2 REMARK 470 GLU A 514 CG CD OE1 OE2 REMARK 470 TYR A 515 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 516 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 517 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 518 CG CD NE CZ NH1 NH2 REMARK 470 SER A 519 OG REMARK 470 VAL A 520 CG1 CG2 REMARK 470 ILE A 521 CG1 CG2 CD1 REMARK 470 LYS A 522 CG CD CE NZ REMARK 470 CYS A 524 SG REMARK 470 GLN A 525 CG CD OE1 NE2 REMARK 470 LEU A 526 CG CD1 CD2 REMARK 470 GLU A 527 CG CD OE1 OE2 REMARK 470 GLU A 528 CG CD OE1 OE2 REMARK 470 ASP A 529 CG OD1 OD2 REMARK 470 ILE A 530 CG1 CG2 CD1 REMARK 470 SER A 531 OG REMARK 470 LYS A 532 CG CD CE NZ REMARK 470 PHE A 533 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 535 CG CD OE1 OE2 REMARK 470 LYS A 536 CG CD CE NZ REMARK 470 ASP A 537 CG OD1 OD2 REMARK 470 ASN A 538 CG OD1 ND2 REMARK 470 ILE A 539 CG1 CG2 CD1 REMARK 470 VAL A 540 CG1 CG2 REMARK 470 LEU A 541 CG CD1 CD2 REMARK 470 GLU A 543 CG CD OE1 OE2 REMARK 470 ILE A 546 CG1 CG2 CD1 REMARK 470 THR A 547 OG1 CG2 REMARK 470 LEU A 548 CG CD1 CD2 REMARK 470 SER A 549 OG REMARK 470 GLN A 552 CG CD OE1 NE2 REMARK 470 ARG A 553 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 555 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 556 CG1 CG2 CD1 REMARK 470 SER A 557 OG REMARK 470 LEU A 558 CG CD1 CD2 REMARK 470 ARG A 560 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 562 CG1 CG2 REMARK 470 TYR A 563 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 564 CG CD CE NZ REMARK 470 ASP A 565 CG OD1 OD2 REMARK 470 ASP A 567 CG OD1 OD2 REMARK 470 LEU A 568 CG CD1 CD2 REMARK 470 TYR A 569 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 570 CG CD1 CD2 REMARK 470 LEU A 571 CG CD1 CD2 REMARK 470 ASP A 572 CG OD1 OD2 REMARK 470 SER A 573 OG REMARK 470 PRO A 574 CG CD REMARK 470 PHE A 575 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 577 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 578 CG CD1 CD2 REMARK 470 ASP A 579 CG OD1 OD2 REMARK 470 VAL A 580 CG1 CG2 REMARK 470 LEU A 581 CG CD1 CD2 REMARK 470 THR A 582 OG1 CG2 REMARK 470 GLU A 583 CG CD OE1 OE2 REMARK 470 LYS A 584 CG CD CE NZ REMARK 470 GLU A 585 CG CD OE1 OE2 REMARK 470 ILE A 586 CG1 CG2 CD1 REMARK 470 PHE A 587 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 588 CG CD OE1 OE2 REMARK 470 SER A 589 OG REMARK 470 CYS A 590 SG REMARK 470 VAL A 591 CG1 CG2 REMARK 470 CYS A 592 SG REMARK 470 LYS A 593 CG CD CE NZ REMARK 470 LEU A 594 CG CD1 CD2 REMARK 470 MET A 595 CG SD CE REMARK 470 ASN A 597 CG OD1 ND2 REMARK 470 LYS A 598 CG CD CE NZ REMARK 470 THR A 599 OG1 CG2 REMARK 470 ARG A 600 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 601 CG1 CG2 CD1 REMARK 470 LEU A 602 CG CD1 CD2 REMARK 470 VAL A 603 CG1 CG2 REMARK 470 THR A 604 OG1 CG2 REMARK 470 SER A 605 OG REMARK 470 LYS A 606 CG CD CE NZ REMARK 470 MET A 607 CG SD CE REMARK 470 GLU A 608 CG CD OE1 OE2 REMARK 470 HIS A 609 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 610 CG CD1 CD2 REMARK 470 LYS A 611 CG CD CE NZ REMARK 470 LYS A 612 CG CD CE NZ REMARK 470 ASP A 614 CG OD1 OD2 REMARK 470 LYS A 615 CG CD CE NZ REMARK 470 ILE A 616 CG1 CG2 CD1 REMARK 470 LEU A 617 CG CD1 CD2 REMARK 470 ILE A 618 CG1 CG2 CD1 REMARK 470 LEU A 619 CG CD1 CD2 REMARK 470 HIS A 620 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 621 CG CD OE1 OE2 REMARK 470 SER A 623 OG REMARK 470 SER A 624 OG REMARK 470 TYR A 625 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 626 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 627 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR A 629 OG1 CG2 REMARK 470 PHE A 630 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 631 OG REMARK 470 GLU A 632 CG CD OE1 OE2 REMARK 470 LEU A 633 CG CD1 CD2 REMARK 470 GLN A 634 CG CD OE1 NE2 REMARK 470 ASN A 635 CG OD1 ND2 REMARK 470 LEU A 636 CG CD1 CD2 REMARK 470 GLN A 637 CG CD OE1 NE2 REMARK 470 PRO A 638 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 460 CA THR A 460 CB 0.058 REMARK 500 ALA A 462 CA ALA A 462 CB 0.031 REMARK 500 VAL A 580 CA VAL A 580 CB 0.033 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 519 N - CA - C ANGL. DEV. = -9.7 DEGREES REMARK 500 LYS A 536 N - CA - C ANGL. DEV. = 8.1 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 462 -42.80 73.42 REMARK 500 ARG A 553 -51.24 68.97 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ATP REMARK 800 SITE_DESCRIPTION: PUTATIVE ATP BINDING SITE. REMARK 999 REMARK 999 SEQUENCE REMARK 999 1NBD SWS P13569 1 - 424 NOT IN ATOMS LIST REMARK 999 1NBD SWS P13569 639 - 1480 NOT IN ATOMS LIST REMARK 999 REMARK 999 REFERENCE: THE SEQUENCE IS DESCRIBED IN RIORDAN ET AL. REMARK 999 (1989)SCIENCE 245: P 1066-1073. DBREF 1NBD A 425 638 UNP P13569 CFTR_HUMAN 425 638 SEQRES 1 A 214 ASP ASP SER LEU PHE PHE SER ASN PHE SER LEU LEU GLY SEQRES 2 A 214 THR PRO VAL LEU LYS ASP ILE ASN PHE LYS ILE GLU ARG SEQRES 3 A 214 GLY GLN LEU LEU ALA VAL ALA GLY SER THR GLY ALA GLY SEQRES 4 A 214 LYS THR SER LEU LEU MET MET ILE MET GLY GLU LEU GLU SEQRES 5 A 214 PRO SER GLU GLY LYS ILE LYS HIS SER GLY ARG ILE SER SEQRES 6 A 214 PHE CYS SER GLN PHE SER TRP ILE MET PRO GLY THR ILE SEQRES 7 A 214 LYS GLU ASN ILE ILE PHE GLY VAL SER TYR ASP GLU TYR SEQRES 8 A 214 ARG TYR ARG SER VAL ILE LYS ALA CYS GLN LEU GLU GLU SEQRES 9 A 214 ASP ILE SER LYS PHE ALA GLU LYS ASP ASN ILE VAL LEU SEQRES 10 A 214 GLY GLU GLY GLY ILE THR LEU SER GLY GLY GLN ARG ALA SEQRES 11 A 214 ARG ILE SER LEU ALA ARG ALA VAL TYR LYS ASP ALA ASP SEQRES 12 A 214 LEU TYR LEU LEU ASP SER PRO PHE GLY TYR LEU ASP VAL SEQRES 13 A 214 LEU THR GLU LYS GLU ILE PHE GLU SER CYS VAL CYS LYS SEQRES 14 A 214 LEU MET ALA ASN LYS THR ARG ILE LEU VAL THR SER LYS SEQRES 15 A 214 MET GLU HIS LEU LYS LYS ALA ASP LYS ILE LEU ILE LEU SEQRES 16 A 214 HIS GLU GLY SER SER TYR PHE TYR GLY THR PHE SER GLU SEQRES 17 A 214 LEU GLN ASN LEU GLN PRO HELIX 1 1 ASP A 426 PHE A 433 1 8 HELIX 2 2 GLY A 463 LEU A 475 1 13 HELIX 3 3 MET A 498 ASN A 505 5 8 HELIX 4 4 ALA A 523 ASP A 529 1 7 HELIX 5 5 ARG A 555 ASP A 565 1 11 HELIX 6 6 VAL A 580 VAL A 591 5 12 HELIX 7 7 MET A 607 HIS A 609 5 3 HELIX 8 8 GLY A 622 LEU A 636 5 15 SHEET 1 A 7 SER A 511 TYR A 515 0 SHEET 2 A 7 ARG A 487 SER A 492 1 SHEET 3 A 7 ASN A 538 GLY A 542 1 SHEET 4 A 7 LEU A 568 SER A 573 1 SHEET 5 A 7 LEU A 602 LYS A 606 1 SHEET 6 A 7 ASP A 614 LEU A 617 -1 SHEET 7 A 7 LEU A 454 ALA A 457 -1 SITE 1 ATP 2 LYS A 464 ASP A 572 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000