PDB Short entry for 1NBV HEADER IMMUNOGLOBULIN 16-MAR-93 1NBV TITLE AN AUTOANTIBODY TO SINGLE-STRANDED DNA: COMPARISON OF THE THREE- TITLE 2 DIMENSIONAL STRUCTURES OF THE UNLIGANDED FAB AND A DEOXYNUCLEOTIDE- TITLE 3 FAB COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGG2B-KAPPA BV04-01 FAB (LIGHT CHAIN); COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IGG2B-KAPPA BV04-01 FAB (HEAVY CHAIN); COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 8 ORGANISM_TAXID: 10090 KEYWDS IMMUNOGLOBULIN EXPDTA X-RAY DIFFRACTION AUTHOR J.N.HERRON,X.M.HE,A.B.EDMUNDSON REVDAT 7 14-AUG-19 1NBV 1 REMARK REVDAT 6 17-JUL-19 1NBV 1 REMARK REVDAT 5 29-NOV-17 1NBV 1 HELIX REVDAT 4 25-AUG-09 1NBV 1 SOURCE REVDAT 3 24-FEB-09 1NBV 1 VERSN REVDAT 2 01-APR-03 1NBV 1 JRNL REVDAT 1 31-JAN-94 1NBV 0 JRNL AUTH J.N.HERRON,X.M.HE,D.W.BALLARD,P.R.BLIER,P.E.PACE, JRNL AUTH 2 A.L.BOTHWELL,E.W.VOSS JR.,A.B.EDMUNDSON JRNL TITL AN AUTOANTIBODY TO SINGLE-STRANDED DNA: COMPARISON OF THE JRNL TITL 2 THREE-DIMENSIONAL STRUCTURES OF THE UNLIGANDED FAB AND A JRNL TITL 3 DEOXYNUCLEOTIDE-FAB COMPLEX. JRNL REF PROTEINS V. 11 159 1991 JRNL REFN ISSN 0887-3585 JRNL PMID 1749770 JRNL DOI 10.1002/PROT.340110302 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.L.GIBSON,J.N.HERRON,D.W.BALLARD,E.W.VOSS,X.M.HE, REMARK 1 AUTH 2 V.A.PATRICK,A.B.EDMUNDSON REMARK 1 TITL CRYSTALLOGRAPHIC CHARACTERIZATION OF THE FAB FRAGMENT OF A REMARK 1 TITL 2 MONOCLONAL ANTI-SS-DNA ANTIBODY REMARK 1 REF MOL.IMMUNOL. V. 22 499 1985 REMARK 1 REFN ISSN 0161-5890 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 18797 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3347 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NBV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175222. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS L 188 O GLY H 104 1465 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU L 110 CD GLU L 110 OE2 0.072 REMARK 500 GLU L 128 CD GLU L 128 OE2 0.079 REMARK 500 CYS L 199 CB CYS L 199 SG -0.153 REMARK 500 GLU L 218 CD GLU L 218 OE1 0.068 REMARK 500 GLU H 1 CD GLU H 1 OE2 0.069 REMARK 500 GLU H 46 CD GLU H 46 OE2 0.071 REMARK 500 GLU H 91 CD GLU H 91 OE1 0.074 REMARK 500 GLU H 156 CD GLU H 156 OE1 0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL L 2 CB - CA - C ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG L 24 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 HIS L 31 CA - CB - CG ANGL. DEV. = 10.5 DEGREES REMARK 500 SER L 32 CB - CA - C ANGL. DEV. = 13.3 DEGREES REMARK 500 LEU L 42 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 LEU L 52 CA - CB - CG ANGL. DEV. = 17.2 DEGREES REMARK 500 ARG L 59 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ASP L 65 CB - CG - OD2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ASP L 75 CB - CG - OD1 ANGL. DEV. = 9.4 DEGREES REMARK 500 ASP L 75 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 LYS L 79 CA - CB - CG ANGL. DEV. = 18.3 DEGREES REMARK 500 LEU L 88 CA - CB - CG ANGL. DEV. = 22.0 DEGREES REMARK 500 TYR L 91 CB - CG - CD2 ANGL. DEV. = 3.7 DEGREES REMARK 500 TYR L 91 CB - CG - CD1 ANGL. DEV. = -4.9 DEGREES REMARK 500 CYS L 93 CA - CB - SG ANGL. DEV. = 6.6 DEGREES REMARK 500 LEU L 109 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 ARG L 113 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG L 113 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 GLU L 128 CA - CB - CG ANGL. DEV. = 17.8 DEGREES REMARK 500 CYS L 139 CA - CB - SG ANGL. DEV. = 8.1 DEGREES REMARK 500 ASP L 148 CB - CG - OD1 ANGL. DEV. = 9.0 DEGREES REMARK 500 ASP L 172 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP L 175 CA - CB - CG ANGL. DEV. = 19.8 DEGREES REMARK 500 ASP L 175 CB - CG - OD1 ANGL. DEV. = 8.7 DEGREES REMARK 500 CYS L 199 N - CA - CB ANGL. DEV. = 9.0 DEGREES REMARK 500 CYS L 199 CA - CB - SG ANGL. DEV. = 10.0 DEGREES REMARK 500 GLU L 200 CA - CB - CG ANGL. DEV. = 13.7 DEGREES REMARK 500 ASN L 215 N - CA - CB ANGL. DEV. = 12.7 DEGREES REMARK 500 ASN L 215 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 ARG L 216 CD - NE - CZ ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG L 216 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 CYS L 219 CA - CB - SG ANGL. DEV. = 8.7 DEGREES REMARK 500 LEU H 18 CA - CB - CG ANGL. DEV. = 19.5 DEGREES REMARK 500 MET H 34 CB - CA - C ANGL. DEV. = 13.5 DEGREES REMARK 500 ARG H 38 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ASP H 68 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG H 74 CD - NE - CZ ANGL. DEV. = 12.4 DEGREES REMARK 500 TYR H 97 CA - CB - CG ANGL. DEV. = 12.7 DEGREES REMARK 500 TYR H 110 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 GLY H 137 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 GLU H 156 CA - CB - CG ANGL. DEV. = 22.9 DEGREES REMARK 500 ASN H 163 N - CA - CB ANGL. DEV. = 11.0 DEGREES REMARK 500 GLN H 179 N - CA - CB ANGL. DEV. = 13.1 DEGREES REMARK 500 PRO H 197 N - CA - C ANGL. DEV. = 19.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO L 8 -149.65 -89.06 REMARK 500 GLN L 27 -139.97 -119.35 REMARK 500 SER L 32 -114.06 -88.34 REMARK 500 ASN L 33 174.02 -55.33 REMARK 500 ASN L 35 157.78 66.24 REMARK 500 THR L 36 92.46 -10.38 REMARK 500 PRO L 45 109.98 -44.52 REMARK 500 LYS L 55 64.91 34.08 REMARK 500 VAL L 56 -43.59 74.50 REMARK 500 SER L 57 8.56 -153.54 REMARK 500 SER L 61 108.73 -49.77 REMARK 500 GLU L 86 1.57 -64.68 REMARK 500 LEU L 141 78.65 -101.16 REMARK 500 ASN L 143 80.26 34.75 REMARK 500 TYR L 145 124.46 -171.18 REMARK 500 ASP L 156 93.80 57.62 REMARK 500 GLU L 159 -159.48 -135.25 REMARK 500 ARG L 160 -145.68 -132.49 REMARK 500 GLN L 161 -163.65 -170.22 REMARK 500 ASN L 162 -22.94 -149.03 REMARK 500 LYS L 174 -21.78 170.24 REMARK 500 ASP L 175 -11.41 -148.78 REMARK 500 LYS L 188 -37.81 -38.32 REMARK 500 GLU L 192 4.66 -68.19 REMARK 500 ASN L 217 30.82 -83.86 REMARK 500 VAL H 2 102.42 156.72 REMARK 500 LYS H 15 -12.45 79.03 REMARK 500 LEU H 18 144.02 -179.05 REMARK 500 ALA H 24 68.89 -150.13 REMARK 500 SER H 25 23.97 -55.18 REMARK 500 PHE H 27 -94.65 39.80 REMARK 500 SER H 28 51.27 -108.26 REMARK 500 ASN H 32 -131.54 -73.91 REMARK 500 ALA H 33 141.21 176.66 REMARK 500 PRO H 41 107.58 -42.49 REMARK 500 LYS H 43 -178.60 21.76 REMARK 500 VAL H 48 -70.48 -89.85 REMARK 500 ARG H 52 -159.04 -68.19 REMARK 500 SER H 55 2.66 -62.62 REMARK 500 TYR H 58 50.01 27.57 REMARK 500 ALA H 59 170.39 -51.61 REMARK 500 ASP H 68 -2.05 96.47 REMARK 500 SER H 77 -32.84 148.83 REMARK 500 ASN H 79 73.12 78.04 REMARK 500 GLU H 91 47.41 -65.51 REMARK 500 THR H 105 -130.27 -97.89 REMARK 500 ALA H 106 134.84 -178.66 REMARK 500 TRP H 107 126.52 -1.60 REMARK 500 PHE H 108 83.08 70.53 REMARK 500 ASP H 138 -147.44 56.74 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TRP H 196 -15.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: LD1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: LD3 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: HD1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: HD2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: HD3 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN WAS SEQUENCED BY D.W. BALLARD, P.R. BLIER, REMARK 999 P.E. PACE, AND A.L.M. BOTHWELL, REFERENCE 1 ABOVE. DBREF 1NBV L 1 219 PIR S16112 S16112 1 219 DBREF 1NBV H 122 219 UNP P01867 GCBM_MOUSE 1 98 SEQADV 1NBV HIS L 39 PIR S16112 TYR 39 CONFLICT SEQADV 1NBV LEU L 51 PIR S16112 PRO 51 CONFLICT SEQADV 1NBV LYS L 55 PIR S16112 ARG 55 CONFLICT SEQADV 1NBV SER L 94 PIR S16112 PHE 94 CONFLICT SEQADV 1NBV SER L 96 PIR S16112 GLY 96 CONFLICT SEQADV 1NBV LEU L 101 PIR S16112 TYR 101 CONFLICT SEQADV 1NBV ALA L 105 PIR S16112 GLY 105 CONFLICT SEQADV 1NBV LYS L 108 PIR S16112 ARG 108 CONFLICT SEQADV 1NBV LEU L 111 PIR S16112 ILE 111 CONFLICT SEQRES 1 L 219 ASP VAL VAL MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 219 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 219 GLN SER LEU VAL HIS SER ASN GLY ASN THR TYR LEU HIS SEQRES 4 L 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 L 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 219 PHE CYS SER GLN SER THR HIS VAL PRO LEU THR PHE GLY SEQRES 9 L 219 ALA GLY THR LYS LEU GLU LEU LYS ARG ALA ASP ALA ALA SEQRES 10 L 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 H 219 GLU VAL GLN PRO VAL GLU THR GLY GLY GLY LEU VAL GLN SEQRES 2 H 219 PRO LYS GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 H 219 PHE SER PHE ASN THR ASN ALA MET ASN TRP VAL ARG GLN SEQRES 4 H 219 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ARG ILE ARG SEQRES 5 H 219 SER LYS SER ASN ASN TYR ALA THR TYR TYR ALA ASP SER SEQRES 6 H 219 VAL LYS ASP ARG PHE THR ILE SER ARG ASP ASP SER GLN SEQRES 7 H 219 ASN MET LEU TYR LEU GLN MET ASN ASN LEU LYS THR GLU SEQRES 8 H 219 ASP THR ALA MET TYR TYR CYS VAL ARG ASP GLN THR GLY SEQRES 9 H 219 THR ALA TRP PHE ALA TYR TRP GLY GLN GLY THR LEU VAL SEQRES 10 H 219 THR VAL SER ALA ALA LYS THR THR PRO PRO SER VAL TYR SEQRES 11 H 219 PRO LEU ALA PRO GLY CYS GLY ASP THR THR GLY SER SER SEQRES 12 H 219 VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU SEQRES 13 H 219 SER VAL THR VAL THR TRP ASN SER GLY SER LEU SER SER SEQRES 14 H 219 SER VAL HIS THR PHE PRO ALA LEU LEU GLN SER GLY LEU SEQRES 15 H 219 TYR THR MET SER SER SER VAL THR VAL PRO SER SER THR SEQRES 16 H 219 TRP PRO SER GLN THR VAL THR CYS SER VAL ALA HIS PRO SEQRES 17 H 219 ALA SER SER THR THR VAL ASP LYS LYS LEU GLU HELIX 1 L1 SER L 126 SER L 132 1 7 HELIX 2 L2 THR L 187 ARG L 193 1 7 HELIX 3 H1 ASP H 75 ASN H 79 1 5 HELIX 4 H2 PRO H 192 GLN H 199 1 8 SHEET 1 L1 4 VAL L 3 THR L 7 0 SHEET 2 L1 4 ALA L 19 SER L 26 -1 O ARG L 24 N THR L 5 SHEET 3 L1 4 ASP L 75 ILE L 80 -1 O PHE L 76 N CYS L 23 SHEET 4 L1 4 SER L 68 SER L 72 -1 O SER L 68 N LYS L 79 SHEET 1 L2 6 LEU L 9 VAL L 13 0 SHEET 2 L2 6 LEU L 101 LYS L 112 1 O LYS L 108 N LEU L 11 SHEET 3 L2 6 GLY L 89 SER L 96 -1 N GLN L 95 O THR L 102 SHEET 4 L2 6 TYR L 37 LYS L 44 -1 O HIS L 39 N SER L 94 SHEET 5 L2 6 GLN L 47 LYS L 55 -1 O ILE L 53 N TRP L 40 SHEET 6 L2 6 ASN L 58 PHE L 60 -1 O ASN L 58 N TYR L 54 SHEET 1 L3 4 THR L 119 PHE L 123 0 SHEET 2 L3 4 ALA L 135 PHE L 144 -1 O ASN L 142 N THR L 119 SHEET 3 L3 4 THR L 177 LEU L 186 -1 O LEU L 186 N ALA L 135 SHEET 4 L3 4 GLY L 163 ASP L 172 -1 N LEU L 165 O THR L 183 SHEET 1 L4 3 ASN L 150 ASP L 156 0 SHEET 2 L4 3 SER L 196 THR L 202 -1 O THR L 202 N ASN L 150 SHEET 3 L4 3 THR L 207 PHE L 214 -1 O ILE L 210 N ALA L 201 SHEET 1 H1 4 GLN H 3 THR H 7 0 SHEET 2 H1 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 H1 4 MET H 80 ASN H 86 -1 O LEU H 81 N CYS H 22 SHEET 4 H1 4 ARG H 69 ASP H 75 -1 O SER H 73 N TYR H 82 SHEET 1 H2 6 GLY H 10 VAL H 12 0 SHEET 2 H2 6 TYR H 110 SER H 120 1 O LEU H 116 N GLY H 10 SHEET 3 H2 6 ALA H 94 VAL H 99 -1 O TYR H 96 N THR H 115 SHEET 4 H2 6 ALA H 33 ALA H 40 -1 N ASN H 35 O VAL H 99 SHEET 5 H2 6 LYS H 43 ARG H 52 -1 O ILE H 51 N MET H 34 SHEET 6 H2 6 ALA H 59 ALA H 63 -1 O TYR H 61 N ARG H 50 SHEET 1 H3 4 SER H 128 LEU H 132 0 SHEET 2 H3 4 VAL H 144 TYR H 153 -1 O LEU H 149 N TYR H 130 SHEET 3 H3 4 LEU H 182 VAL H 191 -1 O VAL H 191 N VAL H 144 SHEET 4 H3 4 SER H 170 GLN H 179 -1 O HIS H 172 N SER H 188 SHEET 1 H4 3 PHE H 154 ASN H 163 0 SHEET 2 H4 3 THR H 195 HIS H 207 -1 O SER H 204 N THR H 161 SHEET 3 H4 3 THR H 212 LEU H 218 -1 O LYS H 216 N CYS H 203 SSBOND 1 CYS L 23 CYS L 93 1555 1555 2.06 SSBOND 2 CYS L 139 CYS L 199 1555 1555 2.00 SSBOND 3 CYS L 219 CYS H 136 1555 1555 2.07 SSBOND 4 CYS H 22 CYS H 98 1555 1555 2.06 SSBOND 5 CYS H 148 CYS H 203 1555 1555 1.98 CISPEP 1 THR L 7 PRO L 8 0 2.52 CISPEP 2 VAL L 99 PRO L 100 0 -1.64 CISPEP 3 TYR L 145 PRO L 146 0 1.82 CISPEP 4 PHE H 154 PRO H 155 0 -7.23 CISPEP 5 TRP H 196 PRO H 197 0 16.88 SITE 1 LD1 4 HIS L 31 SER L 32 TYR L 37 HIS L 39 SITE 1 LD3 4 SER L 96 THR L 97 HIS L 98 VAL L 99 SITE 1 HD1 3 THR H 31 ASN H 32 ALA H 33 SITE 1 HD2 3 ARG H 52 SER H 53 ASN H 56 SITE 1 HD3 7 ASP H 101 GLN H 102 THR H 103 GLY H 104 SITE 2 HD3 7 THR H 105 ALA H 106 TRP H 107 CRYST1 58.400 43.700 41.500 83.40 89.40 84.40 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017123 -0.001679 0.000013 0.00000 SCALE2 0.000000 0.022993 -0.002649 0.00000 SCALE3 0.000000 0.000000 0.024257 0.00000