PDB Short entry for 1NCS HEADER TRANSCRIPTION REGULATION 26-FEB-96 1NCS TITLE NMR STUDY OF SWI5 ZINC FINGER DOMAIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL FACTOR SWI5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC FINGER DNA BINDING DOMAIN 1 OF SWI5; COMPND 5 SYNONYM: PEPTIDE M30F; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: T7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: T7; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET13A; SOURCE 10 EXPRESSION_SYSTEM_GENE: T7; SOURCE 11 OTHER_DETAILS: T7 POLYMERASE EXPRESSION SYSTEM KEYWDS DNA BINDING MOTIF, TRANSCRIPTION REGULATION, ZINC-FINGER EXPDTA SOLUTION NMR NUMMDL 46 AUTHOR R.N.DUTNALL,D.NEUHAUS,D.RHODES REVDAT 3 23-FEB-22 1NCS 1 REMARK LINK REVDAT 2 24-FEB-09 1NCS 1 VERSN REVDAT 1 10-JUN-96 1NCS 0 JRNL AUTH R.N.DUTNALL,D.NEUHAUS,D.RHODES JRNL TITL THE SOLUTION STRUCTURE OF THE FIRST ZINC FINGER DOMAIN OF JRNL TITL 2 SWI5: A NOVEL STRUCTURAL EXTENSION TO A COMMON FOLD. JRNL REF STRUCTURE V. 4 599 1996 JRNL REFN ISSN 0969-2126 JRNL PMID 8736557 JRNL DOI 10.1016/S0969-2126(96)00064-0 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.NAKASEKO,D.NEUHAUS,A.KLUG,D.RHODES REMARK 1 TITL ADJACENT ZINC-FINGER MOTIFS IN MULTIPLE ZINC-FINGER PEPTIDES REMARK 1 TITL 2 FROM SWI5 FORM STRUCTURALLY INDEPENDENT, FLEXIBLY LINKED REMARK 1 TITL 3 DOMAINS REMARK 1 REF J.MOL.BIOL. V. 228 619 1992 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.NEUHAUS,Y.NAKASEKO,J.W.SCHWABE,A.KLUG REMARK 1 TITL SOLUTION STRUCTURES OF TWO ZINC-FINGER DOMAINS FROM SWI5 REMARK 1 TITL 2 OBTAINED USING TWO-DIMENSIONAL 1H NUCLEAR MAGNETIC RESONANCE REMARK 1 TITL 3 SPECTROSCOPY. A ZINC-FINGER STRUCTURE WITH A THIRD STRAND OF REMARK 1 TITL 4 BETA-SHEET REMARK 1 REF J.MOL.BIOL. V. 228 637 1992 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NCS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175236. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 46 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 OTHER_DETAILS: THIS ENTRY REPRESENTS THE STRUCTURE OF THE REMARK 400 FIRST ZINC FINGER DOMAIN OF SWI5, WHICH CONSISTS OF THE REMARK 400 FIRST ZINC FINGER MOTIF PLUS AN ADDITIONAL 15 RESIDUES REMARK 400 N-TERMINAL TO THE MOTIF. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 15 92.37 -167.35 REMARK 500 1 ARG A 17 42.26 -169.13 REMARK 500 1 TYR A 23 52.93 -143.66 REMARK 500 1 LYS A 30 51.36 71.68 REMARK 500 1 CYS A 34 109.55 -56.51 REMARK 500 1 THR A 40 37.08 -160.06 REMARK 500 1 PHE A 43 -162.90 -123.88 REMARK 500 1 ARG A 45 98.89 -48.93 REMARK 500 1 ASP A 59 -49.03 -146.39 REMARK 500 2 LEU A 15 91.96 55.35 REMARK 500 2 SER A 19 -28.31 170.45 REMARK 500 2 TYR A 23 47.76 -152.34 REMARK 500 2 LYS A 30 63.48 74.67 REMARK 500 2 THR A 40 33.81 -156.65 REMARK 500 2 ASP A 59 70.28 75.88 REMARK 500 3 LEU A 15 91.98 62.80 REMARK 500 3 ARG A 17 55.18 71.26 REMARK 500 3 TYR A 23 49.27 -154.55 REMARK 500 3 LYS A 25 72.02 -109.26 REMARK 500 3 LYS A 30 59.94 74.02 REMARK 500 3 THR A 40 28.27 -158.47 REMARK 500 3 PHE A 43 -159.63 -132.42 REMARK 500 3 LYS A 44 -165.08 -129.49 REMARK 500 3 ARG A 45 108.65 -41.10 REMARK 500 3 LEU A 57 -5.23 -142.11 REMARK 500 4 LEU A 15 80.84 55.38 REMARK 500 4 ARG A 17 36.04 -172.72 REMARK 500 4 TYR A 23 54.55 -145.20 REMARK 500 4 LYS A 30 57.37 76.28 REMARK 500 4 CYS A 34 104.15 -56.38 REMARK 500 4 THR A 40 25.43 -160.37 REMARK 500 4 ARG A 45 101.24 -45.79 REMARK 500 4 ARG A 46 -167.47 -160.24 REMARK 500 4 TYR A 47 20.33 -148.29 REMARK 500 4 ASP A 59 26.71 45.27 REMARK 500 5 LEU A 15 92.88 177.29 REMARK 500 5 ARG A 17 33.57 -152.29 REMARK 500 5 SER A 19 -39.18 -157.79 REMARK 500 5 TYR A 23 21.30 -148.41 REMARK 500 5 LYS A 30 55.20 83.62 REMARK 500 5 THR A 40 30.87 -167.13 REMARK 500 5 PHE A 43 -153.64 -125.55 REMARK 500 5 LYS A 44 137.87 -172.55 REMARK 500 5 LEU A 57 -21.47 -143.42 REMARK 500 5 ASP A 59 54.80 -150.52 REMARK 500 6 ARG A 17 60.78 68.63 REMARK 500 6 SER A 19 -36.45 -165.41 REMARK 500 6 TYR A 23 40.70 -155.63 REMARK 500 6 LYS A 30 60.52 84.20 REMARK 500 6 THR A 40 32.63 -161.55 REMARK 500 REMARK 500 THIS ENTRY HAS 404 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 17 0.24 SIDE CHAIN REMARK 500 1 ARG A 46 0.10 SIDE CHAIN REMARK 500 1 ARG A 60 0.32 SIDE CHAIN REMARK 500 2 ARG A 17 0.32 SIDE CHAIN REMARK 500 2 ARG A 45 0.32 SIDE CHAIN REMARK 500 2 ARG A 46 0.31 SIDE CHAIN REMARK 500 2 ARG A 50 0.16 SIDE CHAIN REMARK 500 2 ARG A 60 0.11 SIDE CHAIN REMARK 500 3 ARG A 17 0.27 SIDE CHAIN REMARK 500 3 ARG A 45 0.31 SIDE CHAIN REMARK 500 3 ARG A 46 0.31 SIDE CHAIN REMARK 500 3 ARG A 50 0.26 SIDE CHAIN REMARK 500 3 ARG A 60 0.28 SIDE CHAIN REMARK 500 4 ARG A 17 0.32 SIDE CHAIN REMARK 500 4 ARG A 45 0.22 SIDE CHAIN REMARK 500 4 ARG A 46 0.24 SIDE CHAIN REMARK 500 4 ARG A 50 0.17 SIDE CHAIN REMARK 500 4 ARG A 60 0.30 SIDE CHAIN REMARK 500 5 ARG A 17 0.31 SIDE CHAIN REMARK 500 5 ARG A 45 0.22 SIDE CHAIN REMARK 500 5 ARG A 46 0.14 SIDE CHAIN REMARK 500 5 ARG A 60 0.17 SIDE CHAIN REMARK 500 6 ARG A 17 0.24 SIDE CHAIN REMARK 500 6 ARG A 45 0.28 SIDE CHAIN REMARK 500 6 ARG A 46 0.10 SIDE CHAIN REMARK 500 6 ARG A 50 0.21 SIDE CHAIN REMARK 500 6 ARG A 60 0.27 SIDE CHAIN REMARK 500 7 ARG A 17 0.30 SIDE CHAIN REMARK 500 7 ARG A 45 0.19 SIDE CHAIN REMARK 500 7 ARG A 46 0.23 SIDE CHAIN REMARK 500 7 ARG A 50 0.28 SIDE CHAIN REMARK 500 8 ARG A 17 0.23 SIDE CHAIN REMARK 500 8 ARG A 45 0.24 SIDE CHAIN REMARK 500 8 ARG A 46 0.32 SIDE CHAIN REMARK 500 8 ARG A 50 0.18 SIDE CHAIN REMARK 500 8 ARG A 60 0.29 SIDE CHAIN REMARK 500 9 ARG A 17 0.12 SIDE CHAIN REMARK 500 9 ARG A 45 0.28 SIDE CHAIN REMARK 500 9 ARG A 46 0.30 SIDE CHAIN REMARK 500 9 ARG A 50 0.32 SIDE CHAIN REMARK 500 9 ARG A 60 0.31 SIDE CHAIN REMARK 500 10 ARG A 17 0.24 SIDE CHAIN REMARK 500 10 ARG A 45 0.22 SIDE CHAIN REMARK 500 10 ARG A 46 0.30 SIDE CHAIN REMARK 500 10 ARG A 50 0.31 SIDE CHAIN REMARK 500 10 ARG A 60 0.08 SIDE CHAIN REMARK 500 11 ARG A 17 0.31 SIDE CHAIN REMARK 500 11 ARG A 45 0.29 SIDE CHAIN REMARK 500 11 ARG A 46 0.26 SIDE CHAIN REMARK 500 11 ARG A 50 0.29 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 220 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 61 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 34 SG REMARK 620 2 CYS A 39 SG 109.9 REMARK 620 3 HIS A 52 NE2 113.0 115.0 REMARK 620 4 HIS A 56 NE2 111.0 106.6 100.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 61 DBREF 1NCS A 14 60 UNP P08153 SWI5_YEAST 532 578 SEQRES 1 A 47 THR LEU PRO ARG GLY SER ILE ASP LYS TYR VAL LYS GLU SEQRES 2 A 47 MET PRO ASP LYS THR PHE GLU CYS LEU PHE PRO GLY CYS SEQRES 3 A 47 THR LYS THR PHE LYS ARG ARG TYR ASN ILE ARG SER HIS SEQRES 4 A 47 ILE GLN THR HIS LEU GLU ASP ARG HET ZN A 61 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 SER A 19 VAL A 24 5 6 HELIX 2 2 ARG A 46 GLU A 58 1 13 SHEET 1 A 3 LYS A 25 MET A 27 0 SHEET 2 A 3 THR A 31 CYS A 34 -1 N GLU A 33 O LYS A 25 SHEET 3 A 3 LYS A 41 LYS A 44 -1 O PHE A 43 N PHE A 32 LINK SG CYS A 34 ZN ZN A 61 1555 1555 2.30 LINK SG CYS A 39 ZN ZN A 61 1555 1555 2.29 LINK NE2 HIS A 52 ZN ZN A 61 1555 1555 2.00 LINK NE2 HIS A 56 ZN ZN A 61 1555 1555 1.98 SITE 1 AC1 4 CYS A 34 CYS A 39 HIS A 52 HIS A 56 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000