PDB Short entry for 1NFK HEADER TRANSCRIPTION/DNA 28-FEB-95 1NFK TITLE STRUCTURE OF THE NUCLEAR FACTOR KAPPA-B (NF-KB) P50 TITLE 2 HOMODIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*TP*GP*GP*GP*AP*AP*TP*TP*CP*CP*C)-3'); COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROTEIN (NUCLEAR FACTOR KAPPA-B (NF-KB)); COMPND 7 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 5 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 6 ORGANISM_TAXID: 10090 KEYWDS NF-KB P50, COMPLEX (TRANSCRIPTION FACTOR/DNA), KEYWDS 2 TRANSCRIPTION/DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.GHOSH,G.VAN DUYNE,S.GHOSH,P.B.SIGLER REVDAT 3 24-FEB-09 1NFK 1 VERSN REVDAT 2 01-APR-03 1NFK 1 JRNL REVDAT 1 23-DEC-96 1NFK 0 JRNL AUTH G.GHOSH,G.VAN DUYNE,S.GHOSH,P.B.SIGLER JRNL TITL STRUCTURE OF NF-KAPPA B P50 HOMODIMER BOUND TO A JRNL TITL 2 KAPPA B SITE. JRNL REF NATURE V. 373 303 1995 JRNL REFN ISSN 0028-0836 JRNL PMID 7530332 JRNL DOI 10.1038/373303A0 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 28020 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.340 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6036 REMARK 3 NUCLEIC ACID ATOMS : 492 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 951 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 2.00 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NFK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 293.00; 293.00 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : CHESS; CHESS REMARK 200 BEAMLINE : A1; A1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : NULL; NULL REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30826 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.10000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.05000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.10000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 66.05000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 446 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 32 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 351 REMARK 465 LYS A 352 REMARK 465 ASP A 353 REMARK 465 LYS A 354 REMARK 465 GLU A 355 REMARK 465 GLU A 356 REMARK 465 VAL A 357 REMARK 465 GLN A 358 REMARK 465 ARG A 359 REMARK 465 LYS A 360 REMARK 465 ARG A 361 REMARK 465 GLN A 362 REMARK 465 LYS A 363 REMARK 465 ILE B 351 REMARK 465 LYS B 352 REMARK 465 ASP B 353 REMARK 465 LYS B 354 REMARK 465 GLU B 355 REMARK 465 GLU B 356 REMARK 465 VAL B 357 REMARK 465 GLN B 358 REMARK 465 ARG B 359 REMARK 465 LYS B 360 REMARK 465 ARG B 361 REMARK 465 GLN B 362 REMARK 465 LYS B 363 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT C 1 C4' DT C 1 C3' -0.063 REMARK 500 DT C 1 N3 DT C 1 C4 -0.084 REMARK 500 DT C 1 C6 DT C 1 N1 -0.061 REMARK 500 DG C 4 P DG C 4 O5' -0.079 REMARK 500 DG C 4 C5' DG C 4 C4' -0.087 REMARK 500 DG C 4 C3' DG C 4 C2' -0.058 REMARK 500 DA C 5 O4' DA C 5 C4' 0.086 REMARK 500 DA C 6 C5' DA C 6 C4' 0.065 REMARK 500 DT C 7 C5' DT C 7 C4' -0.067 REMARK 500 DT C 7 C4 DT C 7 C5 -0.061 REMARK 500 DT C 8 P DT C 8 O5' -0.080 REMARK 500 DT C 8 C5' DT C 8 C4' -0.105 REMARK 500 DT C 8 C4 DT C 8 C5 -0.066 REMARK 500 DT C 8 C2 DT C 8 O2 0.056 REMARK 500 DT C 8 C5 DT C 8 C7 -0.049 REMARK 500 DC C 9 O3' DC C 9 C3' -0.066 REMARK 500 DC C 11 C3' DC C 11 C2' -0.059 REMARK 500 DG D 2 O4' DG D 2 C1' 0.076 REMARK 500 DG D 3 C6 DG D 3 N1 -0.062 REMARK 500 DG D 3 C5 DG D 3 N7 0.053 REMARK 500 DG D 3 N7 DG D 3 C8 0.039 REMARK 500 DG D 3 N9 DG D 3 C4 0.050 REMARK 500 DG D 4 C5' DG D 4 C4' -0.066 REMARK 500 DG D 4 O4' DG D 4 C4' 0.065 REMARK 500 DG D 4 N3 DG D 4 C4 0.046 REMARK 500 DG D 4 N7 DG D 4 C8 0.054 REMARK 500 DG D 4 N9 DG D 4 C4 0.064 REMARK 500 DA D 5 O4' DA D 5 C4' 0.065 REMARK 500 DA D 5 N3 DA D 5 C4 0.040 REMARK 500 DA D 6 C4 DA D 6 C5 -0.045 REMARK 500 DA D 6 C5 DA D 6 C6 -0.080 REMARK 500 DA D 6 N9 DA D 6 C4 0.062 REMARK 500 DT D 7 P DT D 7 O5' -0.092 REMARK 500 DT D 7 C5' DT D 7 C4' -0.123 REMARK 500 DT D 7 C5 DT D 7 C6 0.047 REMARK 500 DT D 7 C5 DT D 7 C7 0.073 REMARK 500 DT D 8 P DT D 8 O5' -0.090 REMARK 500 DT D 8 C5' DT D 8 C4' -0.072 REMARK 500 DT D 8 O3' DT D 8 C3' -0.051 REMARK 500 DT D 8 O3' DC D 9 P -0.102 REMARK 500 DC D 10 O4' DC D 10 C4' -0.077 REMARK 500 DC D 10 O3' DC D 10 C3' -0.042 REMARK 500 DC D 11 N1 DC D 11 C6 -0.047 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA C 5 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA C 6 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DT C 7 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT C 7 C4 - C5 - C7 ANGL. DEV. = -4.0 DEGREES REMARK 500 DT C 8 C4 - C5 - C6 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT C 8 C4 - C5 - C7 ANGL. DEV. = -5.8 DEGREES REMARK 500 DC C 9 C3' - C2' - C1' ANGL. DEV. = -5.7 DEGREES REMARK 500 DC C 9 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC C 11 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 DT D 1 C4 - C5 - C6 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT D 1 C4 - C5 - C7 ANGL. DEV. = -3.9 DEGREES REMARK 500 DG D 3 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DG D 4 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG D 4 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 DA D 5 O4' - C4' - C3' ANGL. DEV. = -3.0 DEGREES REMARK 500 DA D 5 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 DG D 4 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DT D 8 C4' - C3' - C2' ANGL. DEV. = 5.5 DEGREES REMARK 500 DC D 11 O4' - C1' - C2' ANGL. DEV. = 3.1 DEGREES REMARK 500 THR A 261 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 45 -72.14 -81.10 REMARK 500 LYS A 76 97.29 -169.03 REMARK 500 TYR A 87 -75.39 46.68 REMARK 500 ALA A 91 -155.68 -111.82 REMARK 500 ASN A 100 51.22 -107.58 REMARK 500 HIS A 115 35.56 -98.15 REMARK 500 ASN A 136 51.24 71.40 REMARK 500 VAL A 169 -83.53 -85.24 REMARK 500 SER A 171 76.70 -64.50 REMARK 500 ASP A 172 45.28 145.85 REMARK 500 ALA A 174 27.13 40.47 REMARK 500 TYR A 175 97.16 -11.03 REMARK 500 LEU A 176 159.19 105.01 REMARK 500 GLN A 177 -111.55 -107.21 REMARK 500 ALA A 178 -151.84 80.30 REMARK 500 GLU A 179 -110.98 -140.09 REMARK 500 ARG A 184 -152.91 -170.20 REMARK 500 PRO A 219 100.89 -51.02 REMARK 500 SER A 221 -90.82 60.17 REMARK 500 SER A 224 104.98 -48.38 REMARK 500 THR A 226 -8.55 -159.40 REMARK 500 ALA A 245 19.91 -145.19 REMARK 500 ARG A 252 144.05 179.23 REMARK 500 THR A 261 -121.37 117.90 REMARK 500 LYS A 272 118.69 -33.50 REMARK 500 GLU A 287 -81.00 55.12 REMARK 500 ASN A 288 71.90 -67.23 REMARK 500 GLN A 306 -4.62 66.49 REMARK 500 LYS A 317 63.57 -6.74 REMARK 500 ASP A 318 -62.57 66.52 REMARK 500 VAL A 319 -79.07 -124.70 REMARK 500 ASN A 320 155.02 79.72 REMARK 500 ILE A 321 -46.00 -145.10 REMARK 500 THR A 322 -143.34 13.50 REMARK 500 PRO A 324 99.14 -58.21 REMARK 500 LEU A 337 22.76 49.08 REMARK 500 LEU B 45 -78.31 -79.38 REMARK 500 HIS B 64 -63.41 69.36 REMARK 500 LEU B 67 107.34 -42.85 REMARK 500 ALA B 70 67.09 -69.59 REMARK 500 SER B 71 10.47 160.23 REMARK 500 LYS B 76 38.54 155.73 REMARK 500 TYR B 87 171.79 49.00 REMARK 500 VAL B 88 -17.61 -162.57 REMARK 500 LYS B 102 0.88 -57.93 REMARK 500 ASN B 103 91.50 -162.24 REMARK 500 HIS B 115 14.18 58.93 REMARK 500 MET B 130 -17.93 76.58 REMARK 500 ASN B 136 31.13 -179.42 REMARK 500 ILE B 160 12.15 -67.50 REMARK 500 LEU B 167 -60.42 -109.25 REMARK 500 VAL B 169 -82.98 -84.95 REMARK 500 LEU B 176 98.80 -56.39 REMARK 500 GLN B 177 -45.35 167.87 REMARK 500 ALA B 178 -113.96 27.24 REMARK 500 ASP B 183 -161.43 -172.18 REMARK 500 ASP B 188 -94.10 -25.16 REMARK 500 GLU B 190 24.86 -70.01 REMARK 500 LYS B 191 -42.47 -153.89 REMARK 500 MET B 205 128.63 -31.49 REMARK 500 ASP B 220 -144.16 -172.37 REMARK 500 THR B 222 163.88 69.38 REMARK 500 SER B 224 -66.17 -97.03 REMARK 500 ARG B 228 -179.25 -63.67 REMARK 500 SER B 234 -162.59 -67.36 REMARK 500 GLU B 287 -159.92 -87.99 REMARK 500 VAL B 291 -87.52 -91.13 REMARK 500 GLN B 306 7.93 58.51 REMARK 500 LYS B 317 21.80 -78.40 REMARK 500 ASP B 318 -141.47 -158.69 REMARK 500 VAL B 319 -39.32 170.12 REMARK 500 ASN B 320 42.79 -68.86 REMARK 500 LYS B 323 123.79 87.09 REMARK 500 PRO B 349 -75.00 -71.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 175 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 35 DISTANCE = 5.15 ANGSTROMS REMARK 525 HOH A 435 DISTANCE = 5.49 ANGSTROMS REMARK 525 HOH B 459 DISTANCE = 5.73 ANGSTROMS REMARK 525 HOH A 508 DISTANCE = 6.28 ANGSTROMS DBREF 1NFK A 39 363 UNP P25799 NFKB1_MOUSE 39 363 DBREF 1NFK B 39 363 UNP P25799 NFKB1_MOUSE 39 363 DBREF 1NFK C 1 11 PDB 1NFK 1NFK 1 11 DBREF 1NFK D 1 11 PDB 1NFK 1NFK 1 11 SEQRES 1 C 11 DT DG DG DG DA DA DT DT DC DC DC SEQRES 1 D 11 DT DG DG DG DA DA DT DT DC DC DC SEQRES 1 A 325 GLY PRO TYR LEU GLN ILE LEU GLU GLN PRO LYS GLN ARG SEQRES 2 A 325 GLY PHE ARG PHE ARG TYR VAL CYS GLU GLY PRO SER HIS SEQRES 3 A 325 GLY GLY LEU PRO GLY ALA SER SER GLU LYS ASN LYS LYS SEQRES 4 A 325 SER TYR PRO GLN VAL LYS ILE CYS ASN TYR VAL GLY PRO SEQRES 5 A 325 ALA LYS VAL ILE VAL GLN LEU VAL THR ASN GLY LYS ASN SEQRES 6 A 325 ILE HIS LEU HIS ALA HIS SER LEU VAL GLY LYS HIS CYS SEQRES 7 A 325 GLU ASP GLY VAL CYS THR VAL THR ALA GLY PRO LYS ASP SEQRES 8 A 325 MET VAL VAL GLY PHE ALA ASN LEU GLY ILE LEU HIS VAL SEQRES 9 A 325 THR LYS LYS LYS VAL PHE GLU THR LEU GLU ALA ARG MET SEQRES 10 A 325 THR GLU ALA CYS ILE ARG GLY TYR ASN PRO GLY LEU LEU SEQRES 11 A 325 VAL HIS SER ASP LEU ALA TYR LEU GLN ALA GLU GLY GLY SEQRES 12 A 325 GLY ASP ARG GLN LEU THR ASP ARG GLU LYS GLU ILE ILE SEQRES 13 A 325 ARG GLN ALA ALA VAL GLN GLN THR LYS GLU MET ASP LEU SEQRES 14 A 325 SER VAL VAL ARG LEU MET PHE THR ALA PHE LEU PRO ASP SEQRES 15 A 325 SER THR GLY SER PHE THR ARG ARG LEU GLU PRO VAL VAL SEQRES 16 A 325 SER ASP ALA ILE TYR ASP SER LYS ALA PRO ASN ALA SER SEQRES 17 A 325 ASN LEU LYS ILE VAL ARG MET ASP ARG THR ALA GLY CYS SEQRES 18 A 325 VAL THR GLY GLY GLU GLU ILE TYR LEU LEU CYS ASP LYS SEQRES 19 A 325 VAL GLN LYS ASP ASP ILE GLN ILE ARG PHE TYR GLU GLU SEQRES 20 A 325 GLU GLU ASN GLY GLY VAL TRP GLU GLY PHE GLY ASP PHE SEQRES 21 A 325 SER PRO THR ASP VAL HIS ARG GLN PHE ALA ILE VAL PHE SEQRES 22 A 325 LYS THR PRO LYS TYR LYS ASP VAL ASN ILE THR LYS PRO SEQRES 23 A 325 ALA SER VAL PHE VAL GLN LEU ARG ARG LYS SER ASP LEU SEQRES 24 A 325 GLU THR SER GLU PRO LYS PRO PHE LEU TYR TYR PRO GLU SEQRES 25 A 325 ILE LYS ASP LYS GLU GLU VAL GLN ARG LYS ARG GLN LYS SEQRES 1 B 325 GLY PRO TYR LEU GLN ILE LEU GLU GLN PRO LYS GLN ARG SEQRES 2 B 325 GLY PHE ARG PHE ARG TYR VAL CYS GLU GLY PRO SER HIS SEQRES 3 B 325 GLY GLY LEU PRO GLY ALA SER SER GLU LYS ASN LYS LYS SEQRES 4 B 325 SER TYR PRO GLN VAL LYS ILE CYS ASN TYR VAL GLY PRO SEQRES 5 B 325 ALA LYS VAL ILE VAL GLN LEU VAL THR ASN GLY LYS ASN SEQRES 6 B 325 ILE HIS LEU HIS ALA HIS SER LEU VAL GLY LYS HIS CYS SEQRES 7 B 325 GLU ASP GLY VAL CYS THR VAL THR ALA GLY PRO LYS ASP SEQRES 8 B 325 MET VAL VAL GLY PHE ALA ASN LEU GLY ILE LEU HIS VAL SEQRES 9 B 325 THR LYS LYS LYS VAL PHE GLU THR LEU GLU ALA ARG MET SEQRES 10 B 325 THR GLU ALA CYS ILE ARG GLY TYR ASN PRO GLY LEU LEU SEQRES 11 B 325 VAL HIS SER ASP LEU ALA TYR LEU GLN ALA GLU GLY GLY SEQRES 12 B 325 GLY ASP ARG GLN LEU THR ASP ARG GLU LYS GLU ILE ILE SEQRES 13 B 325 ARG GLN ALA ALA VAL GLN GLN THR LYS GLU MET ASP LEU SEQRES 14 B 325 SER VAL VAL ARG LEU MET PHE THR ALA PHE LEU PRO ASP SEQRES 15 B 325 SER THR GLY SER PHE THR ARG ARG LEU GLU PRO VAL VAL SEQRES 16 B 325 SER ASP ALA ILE TYR ASP SER LYS ALA PRO ASN ALA SER SEQRES 17 B 325 ASN LEU LYS ILE VAL ARG MET ASP ARG THR ALA GLY CYS SEQRES 18 B 325 VAL THR GLY GLY GLU GLU ILE TYR LEU LEU CYS ASP LYS SEQRES 19 B 325 VAL GLN LYS ASP ASP ILE GLN ILE ARG PHE TYR GLU GLU SEQRES 20 B 325 GLU GLU ASN GLY GLY VAL TRP GLU GLY PHE GLY ASP PHE SEQRES 21 B 325 SER PRO THR ASP VAL HIS ARG GLN PHE ALA ILE VAL PHE SEQRES 22 B 325 LYS THR PRO LYS TYR LYS ASP VAL ASN ILE THR LYS PRO SEQRES 23 B 325 ALA SER VAL PHE VAL GLN LEU ARG ARG LYS SER ASP LEU SEQRES 24 B 325 GLU THR SER GLU PRO LYS PRO PHE LEU TYR TYR PRO GLU SEQRES 25 B 325 ILE LYS ASP LYS GLU GLU VAL GLN ARG LYS ARG GLN LYS FORMUL 5 HOH *317(H2 O) HELIX 1 1 VAL A 58 GLU A 60 5 3 HELIX 2 2 VAL A 147 ILE A 160 1 14 HELIX 3 3 ASP A 188 LYS A 203 1 16 HELIX 4 4 PRO A 300 ASP A 302 5 3 HELIX 5 5 VAL B 58 GLU B 60 5 3 HELIX 6 6 VAL B 147 CYS B 159 1 13 HELIX 7 7 PRO B 165 LEU B 168 1 4 HELIX 8 8 SER B 171 LEU B 173 5 3 HELIX 9 9 ARG B 189 GLU B 204 1 16 HELIX 10 10 PRO B 300 ASP B 302 5 3 SHEET 1 A 3 TYR A 41 ILE A 44 0 SHEET 2 A 3 PRO A 80 CYS A 85 -1 N CYS A 85 O TYR A 41 SHEET 3 A 3 VAL A 131 PHE A 134 -1 N PHE A 134 O PRO A 80 SHEET 1 B 4 VAL A 120 THR A 124 0 SHEET 2 B 4 LYS A 92 VAL A 98 -1 N VAL A 95 O CYS A 121 SHEET 3 B 4 ARG A 211 PRO A 219 -1 N PHE A 217 O LYS A 92 SHEET 4 B 4 PHE A 225 ARG A 228 -1 N ARG A 227 O LEU A 218 SHEET 1 C 2 SER A 110 VAL A 112 0 SHEET 2 C 2 GLY A 138 LEU A 140 -1 N LEU A 140 O SER A 110 SHEET 1 D 3 ALA A 308 LYS A 312 0 SHEET 2 D 3 GLU A 265 CYS A 270 -1 N LEU A 268 O ILE A 309 SHEET 3 D 3 ILE A 250 MET A 253 -1 N ARG A 252 O LEU A 269 SHEET 1 E 4 TRP A 292 PHE A 295 0 SHEET 2 E 4 ILE A 278 GLU A 284 -1 N GLU A 284 O TRP A 292 SHEET 3 E 4 ALA A 325 ARG A 333 -1 N ARG A 332 O GLN A 279 SHEET 4 E 4 LYS A 343 TYR A 347 -1 N TYR A 347 O ALA A 325 SHEET 1 F 3 TYR B 41 ILE B 44 0 SHEET 2 F 3 GLN B 81 CYS B 85 -1 N CYS B 85 O TYR B 41 SHEET 3 F 3 VAL B 131 GLY B 133 -1 N VAL B 132 O VAL B 82 SHEET 1 G 3 VAL B 120 ALA B 125 0 SHEET 2 G 3 ALA B 91 VAL B 98 -1 N VAL B 95 O CYS B 121 SHEET 3 G 3 ARG B 211 LEU B 218 -1 N PHE B 217 O LYS B 92 SHEET 1 H 2 SER B 110 VAL B 112 0 SHEET 2 H 2 GLY B 138 LEU B 140 -1 N LEU B 140 O SER B 110 SHEET 1 I 5 ALA B 257 CYS B 259 0 SHEET 2 I 5 LYS B 343 TYR B 348 1 N LEU B 346 O GLY B 258 SHEET 3 I 5 ALA B 325 ARG B 332 -1 N VAL B 329 O LYS B 343 SHEET 4 I 5 GLN B 279 TYR B 283 -1 N TYR B 283 O PHE B 328 SHEET 5 I 5 GLU B 293 PHE B 295 -1 N GLY B 294 O PHE B 282 SHEET 1 J 3 ALA B 308 LYS B 312 0 SHEET 2 J 3 GLU B 265 CYS B 270 -1 N LEU B 268 O ILE B 309 SHEET 3 J 3 ILE B 250 MET B 253 -1 N ARG B 252 O LEU B 269 SSBOND 1 CYS A 116 CYS A 121 1555 1555 2.33 SSBOND 2 CYS B 116 CYS B 121 1555 1555 2.38 CRYST1 84.200 132.100 80.100 90.00 93.10 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011876 0.000000 0.000643 0.00000 SCALE2 0.000000 0.007570 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012503 0.00000