PDB Short entry for 1NJM HEADER RIBOSOME 02-JAN-03 1NJM TITLE THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM TITLE 2 DEINOCOCCUS RADIODURANS COMPLEXED WITH A TRNA ACCEPTOR STEM MIMIC TITLE 3 (ASM) AND THE ANTIBIOTIC SPARSOMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: 23S RIBOSOMAL RNA; COMPND 3 CHAIN: 0; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: TRNA ACCEPTOR STEM MIMIC; COMPND 6 CHAIN: 5; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 3; COMPND 9 MOLECULE: 50S RIBOSOMAL PROTEIN L16; COMPND 10 CHAIN: K; COMPND 11 MOL_ID: 4; COMPND 12 MOLECULE: GENERAL STRESS PROTEIN CTC; COMPND 13 CHAIN: T SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: THE TERMINAL C OF ASM WAS COUPLED VIA A SOURCE 7 PHOSPHODIESTER BOND TO THE 5 OH OF THE N6-DIMETHYL MOIETY OF SOURCE 8 PUROMYCIN; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 11 ORGANISM_TAXID: 1299; SOURCE 12 MOL_ID: 4; SOURCE 13 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 14 ORGANISM_TAXID: 1299 KEYWDS RIBOSOMES, TRNA, PUROMYCIN, SPARSOMYCIN, PEPTIDYL-TRANSFERASE, KEYWDS 2 PEPTIDE BOND FORMATION, RIBOSOME EXPDTA X-RAY DIFFRACTION MDLTYP CA ATOMS ONLY, CHAIN K, T AUTHOR A.BASHAN,I.AGMON,R.ZARIVATCH,F.SCHLUENZEN,J.M.HARMS,R.BERISIO, AUTHOR 2 H.BARTELS,H.A.HANSEN,A.YONATH REVDAT 3 16-AUG-23 1NJM 1 REMARK LINK REVDAT 2 24-FEB-09 1NJM 1 VERSN REVDAT 1 11-FEB-03 1NJM 0 JRNL AUTH A.BASHAN,I.AGMON,R.ZARIVATCH,F.SCHLUENZEN,J.M.HARMS, JRNL AUTH 2 R.BERISIO,H.BARTELS,F.FRANCESCHI,T.AUERBACH,H.A.HANSEN, JRNL AUTH 3 E.KOSSOY,M.KESSLER,A.YONATH JRNL TITL STRUCTURAL BASIS OF THE RIBOSOMAL MACHINERY FOR PEPTIDE BOND JRNL TITL 2 FORMATION, TRANSLOCATION, AND NASCENT CHAIN PROGRESSION JRNL REF MOL.CELL V. 11 91 2003 JRNL REFN ISSN 1097-2765 JRNL PMID 12535524 JRNL DOI 10.1016/S1097-2765(03)00009-1 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 250710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.284 REMARK 3 FREE R VALUE : 0.308 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 12535 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 347 REMARK 3 NUCLEIC ACID ATOMS : 59902 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.980 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NJM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1000017925. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 290998 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.16900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER MAPS REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 1NKW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ETHANOL, DIMETHYLHEXANEDIOL, MGCL2, REMARK 280 KCL, HEPES, NH4CL, SPARSOMYCIN; SOAKING CRYSTALS IN: 0.025MM ASM REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 84.80000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 204.70000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 347.55000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 84.80000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 204.70000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 347.55000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 84.80000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 204.70000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 347.55000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 84.80000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 204.70000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 347.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: 0, 5, K, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 A 0 249 REMARK 465 C 0 250 REMARK 465 C 0 251 REMARK 465 G 0 252 REMARK 465 A 0 253 REMARK 465 A 0 254 REMARK 465 A 0 255 REMARK 465 C 0 256 REMARK 465 G 0 257 REMARK 465 C 0 258 REMARK 465 U 0 259 REMARK 465 U 0 260 REMARK 465 G 0 261 REMARK 465 C 0 262 REMARK 465 G 0 263 REMARK 465 U 0 264 REMARK 465 U 0 265 REMARK 465 U 0 266 REMARK 465 C 0 267 REMARK 465 G 0 268 REMARK 465 G 0 269 REMARK 465 G 0 270 REMARK 465 G 0 271 REMARK 465 U 0 272 REMARK 465 U 0 273 REMARK 465 G 0 274 REMARK 465 U 0 275 REMARK 465 A 0 276 REMARK 465 G 0 277 REMARK 465 G 0 278 REMARK 465 A 0 279 REMARK 465 C 0 280 REMARK 465 C 0 281 REMARK 465 A 0 282 REMARK 465 G 0 283 REMARK 465 U 0 284 REMARK 465 U 0 285 REMARK 465 U 0 286 REMARK 465 U 0 287 REMARK 465 U 0 288 REMARK 465 A 0 289 REMARK 465 A 0 290 REMARK 465 G 0 291 REMARK 465 C 0 374 REMARK 465 U 0 375 REMARK 465 G 0 376 REMARK 465 G 0 377 REMARK 465 C 0 378 REMARK 465 A 0 379 REMARK 465 C 0 380 REMARK 465 C 0 381 REMARK 465 U 0 382 REMARK 465 G 0 383 REMARK 465 A 0 384 REMARK 465 G 0 385 REMARK 465 U 0 386 REMARK 465 G 0 892 REMARK 465 G 0 893 REMARK 465 G 0 894 REMARK 465 G 0 895 REMARK 465 G 0 896 REMARK 465 C 0 897 REMARK 465 C 0 898 REMARK 465 U 0 899 REMARK 465 A 0 900 REMARK 465 C 0 901 REMARK 465 C 0 902 REMARK 465 A 0 903 REMARK 465 G 0 904 REMARK 465 C 0 905 REMARK 465 U 0 906 REMARK 465 U 0 907 REMARK 465 A 0 908 REMARK 465 C 0 909 REMARK 465 C 0 910 REMARK 465 G 0 2098 REMARK 465 G 0 2099 REMARK 465 A 0 2100 REMARK 465 U 0 2101 REMARK 465 A 0 2102 REMARK 465 C 0 2111 REMARK 465 C 0 2112 REMARK 465 U 0 2113 REMARK 465 G 0 2114 REMARK 465 C 0 2115 REMARK 465 G 0 2116 REMARK 465 U 0 2126 REMARK 465 U 0 2127 REMARK 465 U 0 2128 REMARK 465 U 0 2129 REMARK 465 G 0 2130 REMARK 465 G 0 2131 REMARK 465 A 0 2141 REMARK 465 G 0 2142 REMARK 465 G 0 2143 REMARK 465 C 0 2144 REMARK 465 A 0 2145 REMARK 465 A 0 2146 REMARK 465 C 0 2147 REMARK 465 G 0 2148 REMARK 465 G 0 2149 REMARK 465 U 0 2150 REMARK 465 G 0 2151 REMARK 465 A 0 2152 REMARK 465 A 0 2153 REMARK 465 A 0 2154 REMARK 465 U 0 2155 REMARK 465 A 0 2156 REMARK 465 U 0 2775 REMARK 465 U 0 2776 REMARK 465 A 0 2777 REMARK 465 C 0 2878 REMARK 465 U 0 2879 REMARK 465 C 0 2880 REMARK 465 G 5 11 REMARK 465 G 5 12 REMARK 465 U 5 13 REMARK 465 U 5 14 REMARK 465 C 5 15 REMARK 465 G 5 16 REMARK 465 A 5 17 REMARK 465 U 5 18 REMARK 465 C 5 19 REMARK 465 C 5 20 REMARK 465 MET K 2 REMARK 465 LEU K 3 REMARK 465 LEU K 4 REMARK 465 PRO K 5 REMARK 465 LYS K 6 REMARK 465 ARG K 7 REMARK 465 MET K 132 REMARK 465 VAL K 133 REMARK 465 LYS K 134 REMARK 465 ARG K 135 REMARK 465 GLU K 136 REMARK 465 VAL K 137 REMARK 465 TYR K 138 REMARK 465 ASP K 139 REMARK 465 GLU K 140 REMARK 465 ALA K 141 REMARK 465 GLN K 142 REMARK 465 ASP T 224 REMARK 465 ASN T 225 REMARK 465 ALA T 226 REMARK 465 GLY T 227 REMARK 465 THR T 228 REMARK 465 ASP T 229 REMARK 465 SER T 230 REMARK 465 GLU T 231 REMARK 465 ASP T 232 REMARK 465 ASN T 233 REMARK 465 SER T 234 REMARK 465 ASP T 235 REMARK 465 ALA T 236 REMARK 465 GLN T 237 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 U 0 873 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 SPS 0 2881 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPS 0 2881 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NJN RELATED DB: PDB REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH SPARSOMYCIN REMARK 900 RELATED ID: 1NJO RELATED DB: PDB REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH ACCP REMARK 900 RELATED ID: 1NJP RELATED DB: PDB REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH ASM REMARK 900 RELATED ID: 1K01 RELATED DB: PDB REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH CHLORAMPHENICOL REMARK 900 RELATED ID: 1JZX RELATED DB: PDB REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH CLINDAMYCIN REMARK 900 RELATED ID: 1JZY RELATED DB: PDB REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH ERYTHROMYCIN REMARK 900 RELATED ID: 1JZZ RELATED DB: PDB REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH ROXITHROMYCIN REMARK 900 RELATED ID: 1K00 RELATED DB: PDB REMARK 900 COMPLEX OF DEINOCOCCUS RADIODURANS 50S WITH CLARITHROMYCIN REMARK 900 RELATED ID: 1NKW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS REMARK 900 RADIODURANS DBREF 1NJM 0 1 2880 GB 6460405 AE002087 4635 1756 DBREF 1NJM K 2 142 UNP Q9RXJ5 RL16_DEIRA 2 142 DBREF 1NJM T 1 237 UNP Q9RX88 RL25_DEIRA 17 253 DBREF 1NJM 5 1 35 PDB 1NJM 1NJM 1 35 SEQRES 1 0 2880 G G U C A A G A U A G U A SEQRES 2 0 2880 A G G G U C C A C G G U G SEQRES 3 0 2880 G A U G C C C U G G C G C SEQRES 4 0 2880 U G G A G C C G A U G A A SEQRES 5 0 2880 G G A C G C G A U U A C C SEQRES 6 0 2880 U G C G A A A A G C C C C SEQRES 7 0 2880 G A C G A G C U G G A G A SEQRES 8 0 2880 U A C G C U U U G A C U C SEQRES 9 0 2880 G G G G A U G U C C G A A SEQRES 10 0 2880 U G G G G A A A C C C A C SEQRES 11 0 2880 C U C G U A A G A G G U A SEQRES 12 0 2880 U C C G C A A G G A U G G SEQRES 13 0 2880 G A A C U C A G G G A A C SEQRES 14 0 2880 U G A A A C A U C U C A G SEQRES 15 0 2880 U A C C U G A A G G A G A SEQRES 16 0 2880 A G A A A G A G A A U U C SEQRES 17 0 2880 G A U U C C G U U A G U A SEQRES 18 0 2880 G C G G C G A G C G A A C SEQRES 19 0 2880 C C G G A U C A G C C C A SEQRES 20 0 2880 A A C C G A A A C G C U U SEQRES 21 0 2880 G C G U U U C G G G G U U SEQRES 22 0 2880 G U A G G A C C A G U U U SEQRES 23 0 2880 U U A A G A U U C A A C C SEQRES 24 0 2880 C C U C A A G C C G A A G SEQRES 25 0 2880 U G G C U G G A A A G C U SEQRES 26 0 2880 A C A C C U C A G A A G G SEQRES 27 0 2880 U G A G A G U C C U G U A SEQRES 28 0 2880 G G C G A A C G A G C G G SEQRES 29 0 2880 U U G A C U G U A C U G G SEQRES 30 0 2880 C A C C U G A G U A G G U SEQRES 31 0 2880 C G U U G U U C G U G A A SEQRES 32 0 2880 A C G A U G A C U G A A U SEQRES 33 0 2880 C C G C G C G G A C C A C SEQRES 34 0 2880 C G C G C A A G G C U A A SEQRES 35 0 2880 A U A C U C C C A G U G A SEQRES 36 0 2880 C C G A U A G C G C A U A SEQRES 37 0 2880 G U A C C G U G A G G G A SEQRES 38 0 2880 A A G G U G A A A A G A A SEQRES 39 0 2880 C C C C G G G A G G G G A SEQRES 40 0 2880 G U G A A A G A G A A C C SEQRES 41 0 2880 U G A A A C C G U G G A C SEQRES 42 0 2880 U U A C A A G C A G U C A SEQRES 43 0 2880 U G G C A C C U U A U G C SEQRES 44 0 2880 G U G U U A U G G C G U G SEQRES 45 0 2880 C C U A U U G A A G C A U SEQRES 46 0 2880 G A G C C G G C G A C U U SEQRES 47 0 2880 A G A C C U G A C G U G C SEQRES 48 0 2880 G A G C U U A A G U U G A SEQRES 49 0 2880 A A A A C G G A G G C G G SEQRES 50 0 2880 A G C G A A A G C G A G U SEQRES 51 0 2880 C C G A A U A G G G C G G SEQRES 52 0 2880 C A U U A G U A C G U C G SEQRES 53 0 2880 G G C U A G A C U C G A A SEQRES 54 0 2880 A C C A G G U G A G C U A SEQRES 55 0 2880 A G C A U G A C C A G G U SEQRES 56 0 2880 U G A A A C C C C C G U G SEQRES 57 0 2880 A C A G G G G G C G G A G SEQRES 58 0 2880 G A C C G A A C C G G U G SEQRES 59 0 2880 C C U G C U G A A A C A G SEQRES 60 0 2880 U C U C G G A U G A G U U SEQRES 61 0 2880 G U G U U U A G G A G U G SEQRES 62 0 2880 A A A A G C U A A C C G A SEQRES 63 0 2880 A C C U G G A G A U A G C SEQRES 64 0 2880 U A G U U C U C C C C G A SEQRES 65 0 2880 A A U G U A U U G A G G U SEQRES 66 0 2880 A C A G C C U C G G A U G SEQRES 67 0 2880 U U G A C C A U G U C C U SEQRES 68 0 2880 G U A G A G C A C U C A C SEQRES 69 0 2880 A A G G C U A G G G G G C SEQRES 70 0 2880 C U A C C A G C U U A C C SEQRES 71 0 2880 A A A C C U U A U G A A A SEQRES 72 0 2880 C U C C G A A G G G G C A SEQRES 73 0 2880 C G C G U U U A G U C C G SEQRES 74 0 2880 G G A G U G A G G C U G C SEQRES 75 0 2880 G A G A G C U A A C U U C SEQRES 76 0 2880 C G U A G C C G A G A G G SEQRES 77 0 2880 G A A A C A A C C C A G A SEQRES 78 0 2880 C C A U C A G C U A A G G SEQRES 79 0 2880 U C C C U A A A U G A U C SEQRES 80 0 2880 G C U C A G U G G U U A A SEQRES 81 0 2880 G G A U G U G U C G U C G SEQRES 82 0 2880 C A U A G A C A G C C A G SEQRES 83 0 2880 G A G G U U G G C U U A G SEQRES 84 0 2880 A A G C A G C C A C C C U SEQRES 85 0 2880 U C A A A G A G U G C G U SEQRES 86 0 2880 A A U A G C U C A C U G G SEQRES 87 0 2880 U C G A G U G A C G A U G SEQRES 88 0 2880 C G C C G A A A A U G A U SEQRES 89 0 2880 C G G G G C U C A A G U G SEQRES 90 0 2880 A U C U A C C G A A G C U SEQRES 91 0 2880 A U G G A U U C A A C U C SEQRES 92 0 2880 G C G A A G C G A G U U G SEQRES 93 0 2880 U C U G G U A G G G G A G SEQRES 94 0 2880 C G U U C A G U C C G C G SEQRES 95 0 2880 G A G A A G C C A U A C C SEQRES 96 0 2880 G G A A G G A G U G G U G SEQRES 97 0 2880 G A G C C G A C U G A A G SEQRES 98 0 2880 U G C G G A U G C C G G C SEQRES 99 0 2880 A U G A G U A A C G A U A SEQRES 100 0 2880 A A A G A A G U G A G A A SEQRES 101 0 2880 U C U U C U U C G C C G U SEQRES 102 0 2880 A A G G A C A A G G G U U SEQRES 103 0 2880 C C U G G G G A A G G G U SEQRES 104 0 2880 C G U C C G C C C A G G G SEQRES 105 0 2880 A A A G U C G G G A C C U SEQRES 106 0 2880 A A G G U G A G G C C G A SEQRES 107 0 2880 A C G G C G C A G C C G A SEQRES 108 0 2880 U G G A C A G C A G G U C SEQRES 109 0 2880 A A G A U U C C U G C A C SEQRES 110 0 2880 C G A U C A U G U G G A G SEQRES 111 0 2880 U G A U G G A G G G A C G SEQRES 112 0 2880 C A U U A C G C U A U C C SEQRES 113 0 2880 A A U G C C A A G C U A U SEQRES 114 0 2880 G G C U A U G C U G G U U SEQRES 115 0 2880 G G U A C G C U C A A G G SEQRES 116 0 2880 G C G A U C G G G U C A G SEQRES 117 0 2880 A A A A U C U A C C G G U SEQRES 118 0 2880 C A C A U G C C U C A G A SEQRES 119 0 2880 C G U A U C G G G A G C U SEQRES 120 0 2880 U C C U C G G A A G C G A SEQRES 121 0 2880 A G U U G G A A A C G C G SEQRES 122 0 2880 A C G G U G C C A A G A A SEQRES 123 0 2880 A A G C U U C U A A A C G SEQRES 124 0 2880 U U G A A A C A U G A U U SEQRES 125 0 2880 G C C C G U A C C G C A A SEQRES 126 0 2880 A C C G A C A C A G G U G SEQRES 127 0 2880 U C C G A G U G U C A A U SEQRES 128 0 2880 G C A C U A A G G C G C G SEQRES 129 0 2880 C G A G A G A A C C C U C SEQRES 130 0 2880 G U U A A G G A A C U U U SEQRES 131 0 2880 G C A A U C U C A C C C C SEQRES 132 0 2880 G U A A C U U C G G A A G SEQRES 133 0 2880 A A G G G G U C C C C A C SEQRES 134 0 2880 G C U U C G C G U G G G G SEQRES 135 0 2880 C G C A G U G A A U A G G SEQRES 136 0 2880 C C C A G G C G A C U G U SEQRES 137 0 2880 U U A C C A A A A U C A C SEQRES 138 0 2880 A G C A C U C U G C C A A SEQRES 139 0 2880 C A C G A A C A G U G G A SEQRES 140 0 2880 C G U A U A G G G U G U G SEQRES 141 0 2880 A C G C C U G C C C G G U SEQRES 142 0 2880 G C C G G A A G G U C A A SEQRES 143 0 2880 G U G G A G C G G U G C A SEQRES 144 0 2880 A G C U G C G A A A U G A SEQRES 145 0 2880 A G C C C C G G U G A A C SEQRES 146 0 2880 G G C G G C C G U A A C U SEQRES 147 0 2880 A U A A C G G U C C U A A SEQRES 148 0 2880 G G U A G C G A A A U U C SEQRES 149 0 2880 C U U G U C G G G U A A G SEQRES 150 0 2880 U U C C G A C C U G C A C SEQRES 151 0 2880 G A A A G G C G U A A C G SEQRES 152 0 2880 A U C U G G G C G C U G U SEQRES 153 0 2880 C U C A A C G A G G G A C SEQRES 154 0 2880 U C G G U G A A A U U G A SEQRES 155 0 2880 A U U G G C U G U A A A G SEQRES 156 0 2880 A U G C G G C C U A C C C SEQRES 157 0 2880 G U A G C A G G A C G A A SEQRES 158 0 2880 A A G A C C C C G U G G A SEQRES 159 0 2880 G C U U U A C U A U A G U SEQRES 160 0 2880 C U G G C A U U G G G A U SEQRES 161 0 2880 U C G G G U U U C U C U G SEQRES 162 0 2880 C G U A G G A U A G G U G SEQRES 163 0 2880 G G A G C C U G C G A A A SEQRES 164 0 2880 C U G G C C U U U U G G G SEQRES 165 0 2880 G U C G G U G G A G G C A SEQRES 166 0 2880 A C G G U G A A A U A C C SEQRES 167 0 2880 A C C C U G A G A A A C U SEQRES 168 0 2880 U G G A U U U C U A A C C SEQRES 169 0 2880 U G A A A A A U C A C U U SEQRES 170 0 2880 U C G G G G A C C G U G C SEQRES 171 0 2880 U U G G C G G G U A G U U SEQRES 172 0 2880 U G A C U G G G G C G G U SEQRES 173 0 2880 C G C C U C C C A A A A U SEQRES 174 0 2880 G U A A C G G A G G C G C SEQRES 175 0 2880 C C A A A G G U C A C C U SEQRES 176 0 2880 C A A G A C G G U U G G A SEQRES 177 0 2880 A A U C G U C U G U A G A SEQRES 178 0 2880 G C G C A A A G G U A G A SEQRES 179 0 2880 A G G U G G C U U G A C U SEQRES 180 0 2880 G C G A G A C U G A C A C SEQRES 181 0 2880 G U C G A G C A G G G A G SEQRES 182 0 2880 G A A A C U C G G G C U U SEQRES 183 0 2880 A G U G A A C C G G U G G SEQRES 184 0 2880 U A C C G U G U G G A A G SEQRES 185 0 2880 G G C C A U C G A U C A A SEQRES 186 0 2880 C G G A U A A A A G U U A SEQRES 187 0 2880 C C C C G G G G A U A A C SEQRES 188 0 2880 A G G C U G A U C U C C C SEQRES 189 0 2880 C C G A G A G U C C A U A SEQRES 190 0 2880 U C G G C G G G G A G G U SEQRES 191 0 2880 U U G G C A C C U C G A U SEQRES 192 0 2880 G U C G G C U C G U C G C SEQRES 193 0 2880 A U C C U G G G G C U G A SEQRES 194 0 2880 A G A A G G U C C C A A G SEQRES 195 0 2880 G G U U G G G C U G U U C SEQRES 196 0 2880 G C C C A U U A A A G C G SEQRES 197 0 2880 G C A C G C G A G C U G G SEQRES 198 0 2880 G U U C A G A A C G U C G SEQRES 199 0 2880 U G A G A C A G U U C G G SEQRES 200 0 2880 U C U C U A U C C G C U A SEQRES 201 0 2880 C G G G C G C A G G A G A SEQRES 202 0 2880 A U U G A G G G G A G U U SEQRES 203 0 2880 G C U C C U A G U A C G A SEQRES 204 0 2880 G A G G A C C G G A G U G SEQRES 205 0 2880 A A C G G A C C G C U G G SEQRES 206 0 2880 U C U C C C U G C U G U C SEQRES 207 0 2880 G U A C C A A C G G C A C SEQRES 208 0 2880 A U G C A G G G U A G C U SEQRES 209 0 2880 A U G U C C G G A A C G G SEQRES 210 0 2880 A U A A C C G C U G A A A SEQRES 211 0 2880 G C A U C U A A G C G G G SEQRES 212 0 2880 A A G C C A G C C C C A A SEQRES 213 0 2880 G A U G A G U U C U C C C SEQRES 214 0 2880 A C U G U U U A U C A G G SEQRES 215 0 2880 U A A G A C U C C C G G A SEQRES 216 0 2880 A G A C C A C C G G G U U SEQRES 217 0 2880 A A G A G G C C A G G C G SEQRES 218 0 2880 U G C A C G C A U A G C A SEQRES 219 0 2880 A U G U G U U C A G C G G SEQRES 220 0 2880 A C U G G U G C U C A U C SEQRES 221 0 2880 A G U C G A G G U C U U G SEQRES 222 0 2880 A C C A C U C SEQRES 1 5 35 G G G G C U A A G C G G U SEQRES 2 5 35 U C G A U C C C G C U U A SEQRES 3 5 35 G C U C C A C C PPU SEQRES 1 K 141 MET LEU LEU PRO LYS ARG THR LYS PHE ARG LYS GLN PHE SEQRES 2 K 141 ARG GLY ARG MET THR GLY ASP ALA LYS GLY GLY ASP TYR SEQRES 3 K 141 VAL ALA PHE GLY ASP TYR GLY LEU ILE ALA MET GLU PRO SEQRES 4 K 141 ALA TRP ILE LYS SER ASN GLN ILE GLU ALA CYS ARG ILE SEQRES 5 K 141 VAL MET SER ARG HIS PHE ARG ARG GLY GLY LYS ILE TYR SEQRES 6 K 141 ILE ARG ILE PHE PRO ASP LYS PRO VAL THR LYS LYS PRO SEQRES 7 K 141 ALA GLU THR ARG MET GLY LYS GLY LYS GLY ALA VAL GLU SEQRES 8 K 141 TYR TRP VAL SER VAL VAL LYS PRO GLY ARG VAL MET PHE SEQRES 9 K 141 GLU VAL ALA GLY VAL THR GLU GLU GLN ALA LYS GLU ALA SEQRES 10 K 141 PHE ARG LEU ALA GLY HIS LYS LEU PRO ILE GLN THR LYS SEQRES 11 K 141 MET VAL LYS ARG GLU VAL TYR ASP GLU ALA GLN SEQRES 1 T 237 MET GLU LEU THR ALA LYS PRO ARG THR PRO LYS GLN LYS SEQRES 2 T 237 LEU ASP GLU SER MET ILE ALA ALA VAL ALA TYR ASN LYS SEQRES 3 T 237 GLU ASN ASN VAL SER PHE ALA LEU ASP ARG LYS ALA PHE SEQRES 4 T 237 ASP ARG ALA PHE ARG GLN GLN SER THR THR GLY LEU PHE SEQRES 5 T 237 ASP ILE THR VAL GLU GLY GLY GLU THR PHE PRO ALA LEU SEQRES 6 T 237 VAL LYS ALA VAL GLN MET ASP LYS ARG LYS ARG ALA PRO SEQRES 7 T 237 ILE HIS VAL ASP PHE TYR MET VAL THR TYR GLY GLU PRO SEQRES 8 T 237 VAL GLU VAL SER VAL PRO VAL HIS THR THR GLY ARG SER SEQRES 9 T 237 GLN GLY GLU VAL GLN GLY GLY LEU VAL ASP ILE VAL VAL SEQRES 10 T 237 HIS ASN LEU GLN ILE VAL ALA PRO GLY PRO ARG ARG ILE SEQRES 11 T 237 PRO GLN GLU LEU VAL VAL ASP VAL THR LYS MET ASN ILE SEQRES 12 T 237 GLY ASP HIS ILE THR ALA GLY ASP ILE LYS LEU PRO GLU SEQRES 13 T 237 GLY CYS THR LEU ALA ALA ASP PRO GLU LEU THR VAL VAL SEQRES 14 T 237 SER VAL LEU PRO PRO ARG LEU THR ALA GLU GLU LEU GLU SEQRES 15 T 237 ALA GLU VAL GLN ALA ALA GLN VAL ALA GLY LEU VAL ALA SEQRES 16 T 237 ALA GLY GLU LEU SER GLU GLU ALA ALA GLU ALA VAL LEU SEQRES 17 T 237 GLU GLY ASP ALA SER LEU GLU GLU VAL LYS ALA GLU ALA SEQRES 18 T 237 SER GLU ASP ASN ALA GLY THR ASP SER GLU ASP ASN SER SEQRES 19 T 237 ASP ALA GLN MODRES 1NJM PPU 5 35 A PUROMYCIN-5'-MONOPHOSPHATE HET PPU 5 35 37 HET SPS 02881 22 HETNAM PPU PUROMYCIN-5'-MONOPHOSPHATE HETNAM SPS SPARSOMYCIN FORMUL 2 PPU C22 H30 N7 O8 P FORMUL 5 SPS C13 H19 N3 O5 S2 LINK O3' C 5 34 P PPU 5 35 1555 1555 1.61 SITE 1 AC1 1 A 02581 CRYST1 169.600 409.400 695.100 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005896 0.000000 0.000000 0.00000 SCALE2 0.000000 0.002443 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001439 0.00000