PDB Short entry for 1NL0 HEADER IMMUNE SYSTEM 06-JAN-03 1NL0 TITLE CRYSTAL STRUCTURE OF HUMAN FACTOR IX GLA DOMAIN IN COMPLEX OF AN TITLE 2 INHIBITORY ANTIBODY, 10C12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-FACTOR IX ANTIBODY, 10C12, CHAIN L; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTI-FACTOR IX ANTIBODY, 10C12, CHAIN H; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: FACTOR IX; COMPND 11 CHAIN: G; COMPND 12 FRAGMENT: GLA DOMAIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: 10C12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: 10C12; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 OTHER_DETAILS: THE PROTEIN WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 18 OF THE PROTEIN IS NATURALLY FOUND IN HOMO SAPIENS. KEYWDS IMMUNE SYSTEM, ANTIBODY, GLA DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR M.HUANG,B.C.FURIE,B.FURIE REVDAT 4 03-APR-24 1NL0 1 REMARK SEQADV SHEET LINK REVDAT 3 24-FEB-09 1NL0 1 VERSN REVDAT 2 13-APR-04 1NL0 1 JRNL REVDAT 1 20-JAN-04 1NL0 0 JRNL AUTH M.HUANG,B.C.FURIE,B.FURIE JRNL TITL CRYSTAL STRUCTURE OF THE CALCIUM-STABILIZED HUMAN FACTOR IX JRNL TITL 2 GLA DOMAIN BOUND TO A CONFORMATION-SPECIFIC ANTI-FACTOR IX JRNL TITL 3 ANTIBODY. JRNL REF J.BIOL.CHEM. V. 279 14338 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 14722079 JRNL DOI 10.1074/JBC.M314011200 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2183458.120 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.1 REMARK 3 NUMBER OF REFLECTIONS : 26473 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1298 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3175 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 164 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.026 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3640 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.33000 REMARK 3 B22 (A**2) : -10.02000 REMARK 3 B33 (A**2) : -0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 8.62000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.35 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 43.42 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : GLA.PAR REMARK 3 PARAMETER FILE 3 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NL0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000017965. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 103 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.080 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28585 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 24.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.9 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 38.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.11900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: HOMOLOGY MODEL FROM SWISSMODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.54450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.80700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.54450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.80700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -216.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 60.84174 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 79.36619 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 262 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 127 REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 GLY H 134 REMARK 465 CGU G 46 REMARK 465 CGU G 47 REMARK 465 CGU G 48 REMARK 465 CGU G 49 REMARK 465 CGU G 50 REMARK 465 CGU G 51 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO L 142 C - N - CA ANGL. DEV. = -11.4 DEGREES REMARK 500 PRO H 149 C - N - CA ANGL. DEV. = -15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 2 -3.73 80.62 REMARK 500 VAL L 3 -76.31 -7.59 REMARK 500 LEU L 4 88.49 4.43 REMARK 500 ASN L 27B -95.61 -114.71 REMARK 500 PRO L 40 -56.46 -22.21 REMARK 500 VAL L 51 -46.39 70.20 REMARK 500 SER L 52 12.77 -143.97 REMARK 500 ALA L 84 -174.74 -178.11 REMARK 500 TYR L 141 -76.59 -93.17 REMARK 500 ASP L 152 -97.30 71.46 REMARK 500 ALA H 88 174.77 178.31 REMARK 500 PHE H 146 -94.48 -103.23 REMARK 500 SER H 173 -16.19 -48.65 REMARK 500 LYS G 5 -104.53 -115.74 REMARK 500 CGU G 33 31.60 -70.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA G 905 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR G 1 O REMARK 620 2 CGU G 7 OE12 72.3 REMARK 620 3 CGU G 7 OE11 84.8 50.6 REMARK 620 4 CGU G 17 OE21 71.5 112.4 71.0 REMARK 620 5 CGU G 17 OE22 124.2 129.0 81.0 52.8 REMARK 620 6 CGU G 21 OE21 82.1 143.4 152.9 82.4 87.0 REMARK 620 7 CGU G 21 OE22 121.6 141.7 151.7 105.9 75.7 41.5 REMARK 620 8 HOH G 912 O 81.9 78.8 129.4 145.2 144.4 71.9 69.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA G 904 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN G 2 OD1 REMARK 620 2 CGU G 7 OE11 89.4 REMARK 620 3 CGU G 8 OE22 61.1 77.9 REMARK 620 4 CGU G 17 OE11 145.6 97.0 87.2 REMARK 620 5 CGU G 17 OE21 130.3 77.5 152.6 84.0 REMARK 620 6 CGU G 27 OE22 86.8 134.5 136.1 111.2 71.0 REMARK 620 7 CGU G 27 OE12 84.3 143.7 67.7 70.6 132.0 81.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA G 902 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU G 8 OE21 REMARK 620 2 CGU G 8 OE12 83.3 REMARK 620 3 CGU G 27 OE11 84.2 87.4 REMARK 620 4 CGU G 30 OE22 115.4 160.6 89.3 REMARK 620 5 CGU G 30 OE21 64.4 142.9 72.4 52.6 REMARK 620 6 HOH G 921 O 107.1 99.9 167.1 80.3 106.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA G 903 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU G 8 OE22 REMARK 620 2 CGU G 8 OE21 44.7 REMARK 620 3 CGU G 17 OE11 76.8 120.6 REMARK 620 4 CGU G 27 OE12 60.9 81.0 78.1 REMARK 620 5 CGU G 30 OE21 98.7 65.0 151.4 75.2 REMARK 620 6 HOH G 917 O 147.4 163.2 74.9 97.3 98.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA G 907 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU G 15 OE12 REMARK 620 2 CGU G 15 OE22 78.4 REMARK 620 3 CGU G 20 OE22 66.6 135.7 REMARK 620 4 CGU G 20 OE11 75.8 66.4 79.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA G 901 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU G 26 OE11 REMARK 620 2 CGU G 26 OE22 80.2 REMARK 620 3 CGU G 30 OE11 166.5 86.7 REMARK 620 4 CGU G 30 OE22 94.0 77.1 80.0 REMARK 620 5 HOH G 921 O 99.6 159.0 91.6 82.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA G 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA G 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA G 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA G 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA G 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA G 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 L 211 REMARK 999 REMARK 999 SEQUENCE REMARK 999 AN APPROPRIATE SEQUENCE DATABASE REFERENCE WAS NOT REMARK 999 AVAILABLE FOR CHAINS L AND H AT THE TIME OF PROCESSING. DBREF 1NL0 G 1 45 UNP P00740 FA9_HUMAN 47 91 DBREF 1NL0 L 1 210 PDB 1NL0 1NL0 1 210 DBREF 1NL0 H 1 217 PDB 1NL0 1NL0 1 217 SEQADV 1NL0 CGU G 7 UNP P00740 GLU 53 MODIFIED RESIDUE SEQADV 1NL0 CGU G 8 UNP P00740 GLU 54 MODIFIED RESIDUE SEQADV 1NL0 CGU G 15 UNP P00740 GLU 61 MODIFIED RESIDUE SEQADV 1NL0 CGU G 17 UNP P00740 GLU 63 MODIFIED RESIDUE SEQADV 1NL0 CGU G 20 UNP P00740 GLU 66 MODIFIED RESIDUE SEQADV 1NL0 CGU G 21 UNP P00740 GLU 67 MODIFIED RESIDUE SEQADV 1NL0 CGU G 26 UNP P00740 GLU 72 MODIFIED RESIDUE SEQADV 1NL0 CGU G 27 UNP P00740 GLU 73 MODIFIED RESIDUE SEQADV 1NL0 CGU G 30 UNP P00740 GLU 76 MODIFIED RESIDUE SEQADV 1NL0 CGU G 33 UNP P00740 GLU 79 MODIFIED RESIDUE SEQADV 1NL0 CGU G 36 UNP P00740 GLU 82 MODIFIED RESIDUE SEQADV 1NL0 CGU G 40 UNP P00740 GLU 86 MODIFIED RESIDUE SEQADV 1NL0 CGU G 46 UNP P00740 CLONING ARTIFACT SEQADV 1NL0 CGU G 47 UNP P00740 CLONING ARTIFACT SEQADV 1NL0 CGU G 48 UNP P00740 CLONING ARTIFACT SEQADV 1NL0 CGU G 49 UNP P00740 CLONING ARTIFACT SEQADV 1NL0 CGU G 50 UNP P00740 CLONING ARTIFACT SEQADV 1NL0 CGU G 51 UNP P00740 CLONING ARTIFACT SEQRES 1 L 213 GLN SER VAL LEU THR GLN PRO PRO SER VAL SER ALA ALA SEQRES 2 L 213 PRO GLY GLN LYS VAL THR ILE SER CYS SER GLY SER THR SEQRES 3 L 213 SER ASN ILE GLY ASN ASN TYR VAL SER TRP TYR GLN GLN SEQRES 4 L 213 HIS PRO GLY LYS ALA PRO LYS LEU MET ILE TYR ASP VAL SEQRES 5 L 213 SER LYS ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 L 213 SER LYS SER GLY ASN SER ALA SER LEU ASP ILE SER GLY SEQRES 7 L 213 LEU GLN SER GLU ASP GLU ALA ASP TYR TYR CYS ALA ALA SEQRES 8 L 213 TRP ASP ASP SER LEU SER GLU PHE LEU PHE GLY THR GLY SEQRES 9 L 213 THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 L 213 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 213 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 213 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 L 213 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 213 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 213 SER LEU THR PRO GLU GLN TRP LYS SER HIS LYS SER TYR SEQRES 16 L 213 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 213 THR VAL ALA PRO THR SEQRES 1 H 224 GLY VAL GLN LEU VAL GLU SER GLY GLY GLY VAL VAL GLN SEQRES 2 H 224 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 224 PHE THR PHE SER THR TYR ALA MET HIS TRP VAL ARG GLN SEQRES 4 H 224 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ILE ILE SER SEQRES 5 H 224 TYR ASP GLY SER LYS LYS TYR TYR ALA ASP SER VAL LYS SEQRES 6 H 224 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 224 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 224 ALA VAL TYR TYR CYS ALA ARG ALA SER ILE ALA ALA ALA SEQRES 9 H 224 ARG VAL LEU ASP TYR TRP GLY ARG GLY THR MET VAL THR SEQRES 10 H 224 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 H 224 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 H 224 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 H 224 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 H 224 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 H 224 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 H 224 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 H 224 PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SEQRES 18 H 224 SER CYS ASP SEQRES 1 G 51 TYR ASN SER GLY LYS LEU CGU CGU PHE VAL GLN GLY ASN SEQRES 2 G 51 LEU CGU ARG CGU CYS MET CGU CGU LYS CYS SER PHE CGU SEQRES 3 G 51 CGU ALA ARG CGU VAL PHE CGU ASN THR CGU ARG THR THR SEQRES 4 G 51 CGU PHE TRP LYS GLN TYR CGU CGU CGU CGU CGU CGU MODRES 1NL0 CGU G 7 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL0 CGU G 8 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL0 CGU G 15 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL0 CGU G 17 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL0 CGU G 20 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL0 CGU G 21 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL0 CGU G 26 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL0 CGU G 27 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL0 CGU G 30 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL0 CGU G 33 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL0 CGU G 36 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1NL0 CGU G 40 GLU GAMMA-CARBOXY-GLUTAMIC ACID HET CGU G 7 12 HET CGU G 8 12 HET CGU G 15 12 HET CGU G 17 12 HET CGU G 20 12 HET CGU G 21 12 HET CGU G 26 12 HET CGU G 27 12 HET CGU G 30 12 HET CGU G 33 12 HET CGU G 36 12 HET CGU G 40 12 HET SO4 L 211 5 HET CA G 901 1 HET CA G 902 1 HET CA G 903 1 HET CA G 904 1 HET CA G 905 1 HET CA G 907 1 HETNAM CGU GAMMA-CARBOXY-GLUTAMIC ACID HETNAM SO4 SULFATE ION HETNAM CA CALCIUM ION FORMUL 3 CGU 12(C6 H9 N O6) FORMUL 4 SO4 O4 S 2- FORMUL 5 CA 6(CA 2+) FORMUL 11 HOH *148(H2 O) HELIX 1 1 ASN L 27B ASN L 31 5 5 HELIX 2 2 GLN L 79 GLU L 83 5 5 HELIX 3 3 SER L 122 ALA L 128 1 7 HELIX 4 4 THR L 182 HIS L 189 1 8 HELIX 5 5 THR H 28 TYR H 32 5 5 HELIX 6 6 ARG H 83 THR H 87 5 5 HELIX 7 7 SER H 156 ALA H 158 5 3 HELIX 8 8 PRO H 185 LEU H 189 5 5 HELIX 9 9 LYS H 201 ASN H 204 5 4 HELIX 10 10 ASN G 13 MET G 19 1 7 HELIX 11 11 SER G 24 CGU G 30 1 7 HELIX 12 12 ASN G 34 TYR G 45 1 12 SHEET 1 A 5 SER L 9 ALA L 13 0 SHEET 2 A 5 THR L 102 VAL L 106 1 O THR L 105 N VAL L 11 SHEET 3 A 5 ALA L 84 ASP L 92 -1 N ALA L 84 O LEU L 104 SHEET 4 A 5 SER L 34 GLN L 38 -1 N GLN L 38 O ASP L 85 SHEET 5 A 5 LYS L 45 ILE L 48 -1 O ILE L 48 N TRP L 35 SHEET 1 B 3 SER L 9 ALA L 13 0 SHEET 2 B 3 THR L 102 VAL L 106 1 O THR L 105 N VAL L 11 SHEET 3 B 3 ALA L 84 ASP L 92 -1 N ALA L 84 O LEU L 104 SHEET 1 C 3 VAL L 19 SER L 24 0 SHEET 2 C 3 SER L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 3 C 3 PHE L 62 SER L 67 -1 N SER L 65 O SER L 72 SHEET 1 D 4 SER L 115 PHE L 119 0 SHEET 2 D 4 ALA L 131 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 D 4 TYR L 173 LEU L 181 -1 O ALA L 175 N ILE L 137 SHEET 4 D 4 VAL L 160 THR L 162 -1 N GLU L 161 O TYR L 178 SHEET 1 E 4 SER L 115 PHE L 119 0 SHEET 2 E 4 ALA L 131 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 E 4 TYR L 173 LEU L 181 -1 O ALA L 175 N ILE L 137 SHEET 4 E 4 SER L 166 LYS L 167 -1 N SER L 166 O ALA L 174 SHEET 1 F 4 SER L 154 PRO L 155 0 SHEET 2 F 4 THR L 146 ALA L 151 -1 N ALA L 151 O SER L 154 SHEET 3 F 4 TYR L 192 THR L 197 -1 O GLN L 195 N ALA L 148 SHEET 4 F 4 THR L 202 VAL L 207 -1 O VAL L 203 N VAL L 196 SHEET 1 G 4 GLN H 3 SER H 7 0 SHEET 2 G 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 G 4 THR H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 G 4 PHE H 67 ASP H 72 -1 N SER H 70 O TYR H 79 SHEET 1 H 5 ALA H 99 TRP H 103 0 SHEET 2 H 5 ALA H 88 SER H 96 -1 N ARG H 94 O TYR H 102 SHEET 3 H 5 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 4 H 5 LEU H 45 ILE H 51 -1 O VAL H 48 N TRP H 36 SHEET 5 H 5 LYS H 57 TYR H 59 -1 O TYR H 58 N ILE H 50 SHEET 1 I 4 ALA H 99 TRP H 103 0 SHEET 2 I 4 ALA H 88 SER H 96 -1 N ARG H 94 O TYR H 102 SHEET 3 I 4 THR H 107 VAL H 111 -1 O THR H 107 N TYR H 90 SHEET 4 I 4 GLY H 10 VAL H 12 1 N VAL H 12 O THR H 110 SHEET 1 J 4 SER H 120 LEU H 124 0 SHEET 2 J 4 ALA H 136 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 J 4 TYR H 176 VAL H 184 -1 O LEU H 178 N VAL H 142 SHEET 4 J 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 K 4 SER H 120 LEU H 124 0 SHEET 2 K 4 ALA H 136 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 K 4 TYR H 176 VAL H 184 -1 O LEU H 178 N VAL H 142 SHEET 4 K 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 L 3 THR H 151 TRP H 154 0 SHEET 2 L 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 L 3 THR H 205 LYS H 210 -1 O VAL H 207 N VAL H 198 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 2 CYS L 135 CYS L 194 1555 1555 2.04 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 4 CYS H 140 CYS H 196 1555 1555 2.04 SSBOND 5 CYS G 18 CYS G 23 1555 1555 2.04 LINK C LEU G 6 N CGU G 7 1555 1555 1.33 LINK C CGU G 7 N CGU G 8 1555 1555 1.33 LINK C CGU G 8 N PHE G 9 1555 1555 1.33 LINK C LEU G 14 N CGU G 15 1555 1555 1.33 LINK C CGU G 15 N ARG G 16 1555 1555 1.33 LINK C ARG G 16 N CGU G 17 1555 1555 1.33 LINK C CGU G 17 N CYS G 18 1555 1555 1.33 LINK C MET G 19 N CGU G 20 1555 1555 1.33 LINK C CGU G 20 N CGU G 21 1555 1555 1.33 LINK C CGU G 21 N LYS G 22 1555 1555 1.33 LINK C PHE G 25 N CGU G 26 1555 1555 1.33 LINK C CGU G 26 N CGU G 27 1555 1555 1.33 LINK C CGU G 27 N ALA G 28 1555 1555 1.33 LINK C ARG G 29 N CGU G 30 1555 1555 1.33 LINK C CGU G 30 N VAL G 31 1555 1555 1.33 LINK C PHE G 32 N CGU G 33 1555 1555 1.33 LINK C CGU G 33 N ASN G 34 1555 1555 1.33 LINK C THR G 35 N CGU G 36 1555 1555 1.33 LINK C CGU G 36 N ARG G 37 1555 1555 1.33 LINK C THR G 39 N CGU G 40 1555 1555 1.33 LINK C CGU G 40 N PHE G 41 1555 1555 1.33 LINK O TYR G 1 CA CA G 905 1555 1555 2.35 LINK OD1 ASN G 2 CA CA G 904 1555 1555 2.45 LINK OE11 CGU G 7 CA CA G 904 1555 1555 2.52 LINK OE12 CGU G 7 CA CA G 905 1555 1555 2.24 LINK OE11 CGU G 7 CA CA G 905 1555 1555 2.77 LINK OE21 CGU G 8 CA CA G 902 1555 1555 2.73 LINK OE12 CGU G 8 CA CA G 902 1555 1555 2.58 LINK OE22 CGU G 8 CA CA G 903 1555 1555 3.09 LINK OE21 CGU G 8 CA CA G 903 1555 1555 2.34 LINK OE22 CGU G 8 CA CA G 904 1555 1555 2.44 LINK OE12 CGU G 15 CA CA G 907 1555 1555 2.44 LINK OE22 CGU G 15 CA CA G 907 1555 1555 2.39 LINK OE11 CGU G 17 CA CA G 903 1555 1555 2.62 LINK OE11 CGU G 17 CA CA G 904 1555 1555 2.74 LINK OE21 CGU G 17 CA CA G 904 1555 1555 2.28 LINK OE21 CGU G 17 CA CA G 905 1555 1555 2.38 LINK OE22 CGU G 17 CA CA G 905 1555 1555 2.55 LINK OE22 CGU G 20 CA CA G 907 1555 1555 2.47 LINK OE11 CGU G 20 CA CA G 907 1555 1555 3.15 LINK OE21 CGU G 21 CA CA G 905 1555 1555 2.04 LINK OE22 CGU G 21 CA CA G 905 1555 1555 3.26 LINK OE11 CGU G 26 CA CA G 901 1555 1555 2.39 LINK OE22 CGU G 26 CA CA G 901 1555 1555 2.11 LINK OE11 CGU G 27 CA CA G 902 1555 1555 2.75 LINK OE12 CGU G 27 CA CA G 903 1555 1555 2.25 LINK OE22 CGU G 27 CA CA G 904 1555 1555 2.37 LINK OE12 CGU G 27 CA CA G 904 1555 1555 2.59 LINK OE11 CGU G 30 CA CA G 901 1555 1555 2.44 LINK OE22 CGU G 30 CA CA G 901 1555 1555 2.17 LINK OE22 CGU G 30 CA CA G 902 1555 1555 2.62 LINK OE21 CGU G 30 CA CA G 902 1555 1555 2.28 LINK OE21 CGU G 30 CA CA G 903 1555 1555 2.66 LINK CA CA G 901 O HOH G 921 1555 1555 3.17 LINK CA CA G 902 O HOH G 921 1555 1555 2.94 LINK CA CA G 903 O HOH G 917 1555 1555 2.34 LINK CA CA G 905 O HOH G 912 1555 1555 2.49 SITE 1 AC1 2 CGU G 26 CGU G 30 SITE 1 AC2 4 CGU G 8 CGU G 27 CGU G 30 HOH G 921 SITE 1 AC3 5 CGU G 8 CGU G 17 CGU G 27 CGU G 30 SITE 2 AC3 5 HOH G 917 SITE 1 AC4 6 TYR G 1 ASN G 2 CGU G 7 CGU G 8 SITE 2 AC4 6 CGU G 17 CGU G 27 SITE 1 AC5 5 TYR G 1 CGU G 7 CGU G 17 CGU G 21 SITE 2 AC5 5 HOH G 912 SITE 1 AC6 2 CGU G 15 CGU G 20 SITE 1 AC7 5 SER L 80 GLN L 109 TYR L 141 LYS L 167 SITE 2 AC7 5 HOH L 212 CRYST1 105.089 71.614 90.867 90.00 119.14 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009516 0.000000 0.005305 0.00000 SCALE2 0.000000 0.013964 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012600 0.00000