PDB Short entry for 1NUH HEADER ISOMERASE 31-JAN-03 1NUH TITLE THE CRYSTAL STRUCTURE OF HUMAN PHOSPHOGLUCOSE ISOMERASE COMPLEXED WITH TITLE 2 5-PHOSPHOARABINONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHOSPHOGLUCOSE ISOMERASE; COMPND 5 EC: 5.3.1.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GPI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET5A KEYWDS ALDOSE-KETOSE ISOMERASE, GLYCOLYSIS ENZYME, NEUROTROPHIC GROWTH KEYWDS 2 FACTOR, CYTOKINE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.DAVIES REVDAT 6 16-AUG-23 1NUH 1 REMARK LINK REVDAT 5 24-JAN-18 1NUH 1 JRNL REVDAT 4 13-JUL-11 1NUH 1 VERSN REVDAT 3 24-FEB-09 1NUH 1 VERSN REVDAT 2 03-JUN-03 1NUH 1 JRNL REVDAT 1 11-FEB-03 1NUH 0 JRNL AUTH C.DAVIES,H.MUIRHEAD,J.CHIRGWIN JRNL TITL THE STRUCTURE OF HUMAN PHOSPHOGLUCOSE ISOMERASE COMPLEXED JRNL TITL 2 WITH A TRANSITION-STATE ANALOGUE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 59 1111 2003 JRNL REFN ISSN 0907-4449 JRNL PMID 12777791 JRNL DOI 10.1107/S0907444903007352 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.READ,J.PEARCE,X.LI,H.MUIRHEAD,J.CHIRGWIN,C.DAVIES REMARK 1 TITL THE CRYSTAL STRUCTURE OF HUMAN PHOSPHOGLUCOSE ISOMERASE AT REMARK 1 TITL 2 1.6 A RESOLUTION: IMPLICATIONS FOR CATALYTIC MECHANISM, REMARK 1 TITL 3 CYTOKINE ACTIVITY AND HAEMOLYTIC ANAEMIA REMARK 1 REF J.MOL.BIOL. V. 309 447 2001 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.2001.4680 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 21468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1101 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1481 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4424 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 109 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.51000 REMARK 3 B22 (A**2) : -0.51000 REMARK 3 B33 (A**2) : 1.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.815 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.324 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.256 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.310 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.872 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4570 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6193 ; 1.473 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 554 ; 3.624 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 826 ;17.246 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 671 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3452 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2330 ; 0.241 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 360 ; 0.174 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 132 ; 0.202 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.348 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2755 ; 0.516 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4439 ; 1.008 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1815 ; 1.834 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1754 ; 3.022 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NUH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000018216. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21797 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.510 REMARK 200 RESOLUTION RANGE LOW (A) : 94.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : 0.12800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.25400 REMARK 200 R SYM FOR SHELL (I) : 0.25400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: REFINEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDN ENTRY 1IAT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1 M AMMONIUM SULPHATE, 100 MM TRIS REMARK 280 PH 8.5, 5 MM 5-PHOSPHOARABINONATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.55000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.20000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 102.82500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.20000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.27500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.20000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.20000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 102.82500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.20000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.20000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.27500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN. THE BIOLOGICALLY ACTIVE STATE IS REMARK 300 DIMERIC. THE DIMER IS PRODUCED BY APPLYING THE FOLLOWING OPERATION: REMARK 300 Y,X,-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 15170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -201.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 VAL A 556 REMARK 465 GLN A 557 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 555 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 6 O HOH A 609 1.99 REMARK 500 O GLY A 530 NH2 ARG A 552 2.18 REMARK 500 NE ARG A 136 O1 SO4 A 560 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 567 O HOH A 567 7555 1.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 150 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 371 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 404 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 505 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 46 -6.24 79.21 REMARK 500 LYS A 56 38.77 -78.34 REMARK 500 ASP A 160 -60.33 -143.96 REMARK 500 ASP A 341 114.73 -160.61 REMARK 500 THR A 374 -136.34 -121.58 REMARK 500 ALA A 389 -93.74 -130.66 REMARK 500 LEU A 462 -60.09 -26.56 REMARK 500 GLN A 511 65.90 -162.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 558 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 559 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 560 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 561 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 562 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 563 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PA5 A 564 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IAT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN PHOSPHOGLUCOSE ISOMERASE/NEUROLEUKIN/ REMARK 900 AUTOCRINE MOTILITY FACTOR/MATURATION FACTOR DBREF 1NUH A 0 557 UNP P06744 G6PI_HUMAN 1 558 SEQRES 1 A 558 MET ALA ALA LEU THR ARG ASP PRO GLN PHE GLN LYS LEU SEQRES 2 A 558 GLN GLN TRP TYR ARG GLU HIS ARG SER GLU LEU ASN LEU SEQRES 3 A 558 ARG ARG LEU PHE ASP ALA ASN LYS ASP ARG PHE ASN HIS SEQRES 4 A 558 PHE SER LEU THR LEU ASN THR ASN HIS GLY HIS ILE LEU SEQRES 5 A 558 VAL ASP TYR SER LYS ASN LEU VAL THR GLU ASP VAL MET SEQRES 6 A 558 ARG MET LEU VAL ASP LEU ALA LYS SER ARG GLY VAL GLU SEQRES 7 A 558 ALA ALA ARG GLU ARG MET PHE ASN GLY GLU LYS ILE ASN SEQRES 8 A 558 TYR THR GLU GLY ARG ALA VAL LEU HIS VAL ALA LEU ARG SEQRES 9 A 558 ASN ARG SER ASN THR PRO ILE LEU VAL ASP GLY LYS ASP SEQRES 10 A 558 VAL MET PRO GLU VAL ASN LYS VAL LEU ASP LYS MET LYS SEQRES 11 A 558 SER PHE CYS GLN ARG VAL ARG SER GLY ASP TRP LYS GLY SEQRES 12 A 558 TYR THR GLY LYS THR ILE THR ASP VAL ILE ASN ILE GLY SEQRES 13 A 558 ILE GLY GLY SER ASP LEU GLY PRO LEU MET VAL THR GLU SEQRES 14 A 558 ALA LEU LYS PRO TYR SER SER GLY GLY PRO ARG VAL TRP SEQRES 15 A 558 TYR VAL SER ASN ILE ASP GLY THR HIS ILE ALA LYS THR SEQRES 16 A 558 LEU ALA GLN LEU ASN PRO GLU SER SER LEU PHE ILE ILE SEQRES 17 A 558 ALA SER LYS THR PHE THR THR GLN GLU THR ILE THR ASN SEQRES 18 A 558 ALA GLU THR ALA LYS GLU TRP PHE LEU GLN ALA ALA LYS SEQRES 19 A 558 ASP PRO SER ALA VAL ALA LYS HIS PHE VAL ALA LEU SER SEQRES 20 A 558 THR ASN THR THR LYS VAL LYS GLU PHE GLY ILE ASP PRO SEQRES 21 A 558 GLN ASN MET PHE GLU PHE TRP ASP TRP VAL GLY GLY ARG SEQRES 22 A 558 TYR SER LEU TRP SER ALA ILE GLY LEU SER ILE ALA LEU SEQRES 23 A 558 HIS VAL GLY PHE ASP ASN PHE GLU GLN LEU LEU SER GLY SEQRES 24 A 558 ALA HIS TRP MET ASP GLN HIS PHE ARG THR THR PRO LEU SEQRES 25 A 558 GLU LYS ASN ALA PRO VAL LEU LEU ALA LEU LEU GLY ILE SEQRES 26 A 558 TRP TYR ILE ASN CYS PHE GLY CYS GLU THR HIS ALA MET SEQRES 27 A 558 LEU PRO TYR ASP GLN TYR LEU HIS ARG PHE ALA ALA TYR SEQRES 28 A 558 PHE GLN GLN GLY ASP MET GLU SER ASN GLY LYS TYR ILE SEQRES 29 A 558 THR LYS SER GLY THR ARG VAL ASP HIS GLN THR GLY PRO SEQRES 30 A 558 ILE VAL TRP GLY GLU PRO GLY THR ASN GLY GLN HIS ALA SEQRES 31 A 558 PHE TYR GLN LEU ILE HIS GLN GLY THR LYS MET ILE PRO SEQRES 32 A 558 CYS ASP PHE LEU ILE PRO VAL GLN THR GLN HIS PRO ILE SEQRES 33 A 558 ARG LYS GLY LEU HIS HIS LYS ILE LEU LEU ALA ASN PHE SEQRES 34 A 558 LEU ALA GLN THR GLU ALA LEU MET ARG GLY LYS SER THR SEQRES 35 A 558 GLU GLU ALA ARG LYS GLU LEU GLN ALA ALA GLY LYS SER SEQRES 36 A 558 PRO GLU ASP LEU GLU ARG LEU LEU PRO HIS LYS VAL PHE SEQRES 37 A 558 GLU GLY ASN ARG PRO THR ASN SER ILE VAL PHE THR LYS SEQRES 38 A 558 LEU THR PRO PHE MET LEU GLY ALA LEU VAL ALA MET TYR SEQRES 39 A 558 GLU HIS LYS ILE PHE VAL GLN GLY ILE ILE TRP ASP ILE SEQRES 40 A 558 ASN SER PHE ASP GLN TRP GLY VAL GLU LEU GLY LYS GLN SEQRES 41 A 558 LEU ALA LYS LYS ILE GLU PRO GLU LEU ASP GLY SER ALA SEQRES 42 A 558 GLN VAL THR SER HIS ASP ALA SER THR ASN GLY LEU ILE SEQRES 43 A 558 ASN PHE ILE LYS GLN GLN ARG GLU ALA ARG VAL GLN HET SO4 A 558 5 HET SO4 A 559 5 HET SO4 A 560 5 HET SO4 A 561 5 HET SO4 A 562 5 HET SO4 A 563 5 HET PA5 A 564 15 HETNAM SO4 SULFATE ION HETNAM PA5 5-PHOSPHOARABINONIC ACID FORMUL 2 SO4 6(O4 S 2-) FORMUL 8 PA5 C5 H11 O9 P FORMUL 9 HOH *109(H2 O) HELIX 1 1 ALA A 1 ASP A 6 1 6 HELIX 2 2 ASP A 6 ARG A 20 1 15 HELIX 3 3 SER A 21 LEU A 23 5 3 HELIX 4 4 ASN A 24 ALA A 31 1 8 HELIX 5 5 ASP A 34 PHE A 39 1 6 HELIX 6 6 THR A 60 ARG A 74 1 15 HELIX 7 7 GLY A 75 GLY A 86 1 12 HELIX 8 8 LEU A 98 ARG A 103 1 6 HELIX 9 9 VAL A 117 GLY A 138 1 22 HELIX 10 10 ILE A 156 SER A 159 5 4 HELIX 11 11 ASP A 160 LEU A 170 1 11 HELIX 12 12 LYS A 171 SER A 174 5 4 HELIX 13 13 ASP A 187 ALA A 196 1 10 HELIX 14 14 GLN A 197 LEU A 198 5 2 HELIX 15 15 ASN A 199 GLU A 201 5 3 HELIX 16 16 THR A 214 LYS A 233 1 20 HELIX 17 17 ASP A 234 SER A 236 5 3 HELIX 18 18 ALA A 237 HIS A 241 1 5 HELIX 19 19 ASN A 248 GLY A 256 1 9 HELIX 20 20 ASP A 258 GLN A 260 5 3 HELIX 21 21 GLY A 270 SER A 274 5 5 HELIX 22 22 SER A 277 ILE A 279 5 3 HELIX 23 23 GLY A 280 GLY A 288 1 9 HELIX 24 24 GLY A 288 THR A 309 1 22 HELIX 25 25 PRO A 310 LYS A 313 5 4 HELIX 26 26 ASN A 314 CYS A 329 1 16 HELIX 27 27 ASP A 341 HIS A 345 5 5 HELIX 28 28 ARG A 346 GLY A 360 1 15 HELIX 29 29 THR A 384 ALA A 389 5 6 HELIX 30 30 PHE A 390 GLY A 397 1 8 HELIX 31 31 ILE A 415 LYS A 417 5 3 HELIX 32 32 GLY A 418 GLY A 438 1 21 HELIX 33 33 SER A 440 ALA A 451 1 12 HELIX 34 34 SER A 454 LEU A 462 1 9 HELIX 35 35 PRO A 463 VAL A 466 5 4 HELIX 36 36 THR A 482 TRP A 504 1 23 HELIX 37 37 GLN A 511 LYS A 518 1 8 HELIX 38 38 GLN A 519 LYS A 522 5 4 HELIX 39 39 LYS A 523 ASP A 529 1 7 HELIX 40 40 ASP A 538 GLU A 553 1 16 SHEET 1 A 6 SER A 40 ASN A 44 0 SHEET 2 A 6 HIS A 49 ASP A 53 -1 O VAL A 52 N LEU A 41 SHEET 3 A 6 THR A 473 LYS A 480 -1 O VAL A 477 N LEU A 51 SHEET 4 A 6 CYS A 403 GLN A 410 1 N PHE A 405 O ASN A 474 SHEET 5 A 6 THR A 334 PRO A 339 1 N LEU A 338 O ASP A 404 SHEET 6 A 6 ILE A 377 TRP A 379 1 O ILE A 377 N HIS A 335 SHEET 1 B 2 LEU A 111 VAL A 112 0 SHEET 2 B 2 LYS A 115 ASP A 116 -1 O LYS A 115 N VAL A 112 SHEET 1 C 5 ARG A 179 VAL A 183 0 SHEET 2 C 5 ASP A 150 ILE A 154 1 N VAL A 151 O ARG A 179 SHEET 3 C 5 SER A 203 ALA A 208 1 O LEU A 204 N ILE A 152 SHEET 4 C 5 PHE A 242 SER A 246 1 O VAL A 243 N ILE A 207 SHEET 5 C 5 MET A 262 GLU A 264 1 O PHE A 263 N ALA A 244 LINK NZ LYS A 240 O1 SO4 A 561 1555 1555 1.69 CISPEP 1 GLY A 383 THR A 384 0 2.29 SITE 1 AC1 2 THR A 368 ARG A 369 SITE 1 AC2 3 ARG A 27 ASN A 46 HIS A 47 SITE 1 AC3 2 ARG A 136 HOH A 626 SITE 1 AC4 3 TRP A 140 LYS A 141 LYS A 240 SITE 1 AC5 4 TYR A 173 LYS A 480 THR A 482 HOH A 670 SITE 1 AC6 2 THR A 149 ARG A 179 SITE 1 AC7 14 ILE A 156 GLY A 157 GLY A 158 SER A 159 SITE 2 AC7 14 SER A 209 LYS A 210 THR A 211 THR A 214 SITE 3 AC7 14 GLN A 353 GLU A 357 HIS A 388 LYS A 518 SITE 4 AC7 14 HOH A 566 HOH A 601 CRYST1 94.400 94.400 137.100 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010593 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010593 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007294 0.00000