PDB Short entry for 1NUQ HEADER TRANSFERASE 01-FEB-03 1NUQ TITLE CRYSTAL STRUCTURE OF HUMAN CYTOSOLIC NMN/NAMN ADENYLYLTRANSFERASE TITLE 2 COMPLEXED WITH NAAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: FKSG76; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NMN/NAMN ADENYLYLTRANSFERASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FKSG76; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH10-BETA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEX KEYWDS NAD BIOSYNTHESIS, MITOCHONDRIA, PYRIDINE ADENYLYLTRANSFERASE, ENZYME KEYWDS 2 CATALYSIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.ZHANG,O.V.KURNASOV,S.KARTHIKEYAN,N.V.GRISHIN,A.L.OSTERMAN,H.ZHANG REVDAT 6 16-AUG-23 1NUQ 1 REMARK REVDAT 5 23-OCT-19 1NUQ 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 HETSYN FORMUL ATOM REVDAT 4 16-NOV-11 1NUQ 1 HETATM HET HETNAM REVDAT 3 13-JUL-11 1NUQ 1 VERSN REVDAT 2 24-FEB-09 1NUQ 1 VERSN REVDAT 1 03-JUN-03 1NUQ 0 JRNL AUTH X.ZHANG,O.V.KURNASOV,S.KARTHIKEYAN,N.V.GRISHIN,A.L.OSTERMAN, JRNL AUTH 2 H.ZHANG JRNL TITL STRUCTURAL CHARACTERIZATION OF A HUMAN CYTOSOLIC NMN/NAMN JRNL TITL 2 ADENYLYLTRANSFERASE AND IMPLICATION IN HUMAN NAD JRNL TITL 3 BIOSYNTHESIS JRNL REF J.BIOL.CHEM. V. 278 13503 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12574164 JRNL DOI 10.1074/JBC.M300073200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.ZHOU,O.KURNASOV,D.R.TOMCHICK,D.D.BINNS,N.V.GRISHIN, REMARK 1 AUTH 2 V.E.MARQUEZ,A.L.OSTERMAN,H.ZHANG REMARK 1 TITL STRUCTURE OF HUMAN NICOTINAMIDE/NICOTONIC ACID REMARK 1 TITL 2 MONONUCLEOTIDE ADENYLYLTRANSFERASE BASIS FOR THE DUAL REMARK 1 TITL 3 SUBSTRATE SPECIFICITY AND ACTIVATION OF THE ONCOLYTIC AGENT REMARK 1 TITL 4 TIAZOFURIN REMARK 1 REF J.BIOL.CHEM. V. 277 13148 2002 REMARK 1 REFN ISSN 0021-9258 REMARK 1 DOI 10.1074/JBC.M111469200 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 37261 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1859 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5604 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 297 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3399 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 282 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.25000 REMARK 3 B22 (A**2) : -1.25000 REMARK 3 B33 (A**2) : 2.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.13 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.920 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.490 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.310 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.160 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.010 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 40.63 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : SO4.PAR REMARK 3 PARAMETER FILE 4 : DND.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : SO4.TOP REMARK 3 TOPOLOGY FILE 4 : DND.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1NUQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000018222. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : OSMIC MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37261 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 60.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1KQN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA CADODALYTE, LITHIUM SULPHATE, PEG REMARK 280 400, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.75400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.65450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.65450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.63100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.65450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.65450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.87700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.65450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.65450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 110.63100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.65450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.65450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.87700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.75400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY IS TETRAMER AND IS GENERATED BY TWO REMARK 300 FOLD AXIS : Y,X,-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 16800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -171.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 759 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 761 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 760 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ARG A 106 REMARK 465 SER A 107 REMARK 465 PRO A 108 REMARK 465 PRO A 109 REMARK 465 GLN A 110 REMARK 465 MET A 111 REMARK 465 GLU A 112 REMARK 465 GLY A 113 REMARK 465 PRO A 114 REMARK 465 ASP A 115 REMARK 465 HIS A 116 REMARK 465 GLY A 117 REMARK 465 LYS A 118 REMARK 465 ALA A 119 REMARK 465 LEU A 120 REMARK 465 PHE A 121 REMARK 465 SER A 122 REMARK 465 THR A 123 REMARK 465 PRO A 124 REMARK 465 ALA A 125 REMARK 465 GLY A 236 REMARK 465 SER A 237 REMARK 465 THR A 238 REMARK 465 TRP A 239 REMARK 465 LYS A 240 REMARK 465 GLY A 241 REMARK 465 LYS A 242 REMARK 465 SER A 243 REMARK 465 THR A 244 REMARK 465 GLN A 245 REMARK 465 SER A 246 REMARK 465 THR A 247 REMARK 465 GLU A 248 REMARK 465 GLY A 249 REMARK 465 LYS A 250 REMARK 465 THR A 251 REMARK 465 SER A 252 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 SER B 107 REMARK 465 PRO B 108 REMARK 465 PRO B 109 REMARK 465 GLN B 110 REMARK 465 MET B 111 REMARK 465 GLU B 112 REMARK 465 GLY B 113 REMARK 465 PRO B 114 REMARK 465 ASP B 115 REMARK 465 HIS B 116 REMARK 465 GLY B 117 REMARK 465 LYS B 118 REMARK 465 ALA B 119 REMARK 465 LEU B 120 REMARK 465 PHE B 121 REMARK 465 SER B 122 REMARK 465 THR B 123 REMARK 465 PRO B 124 REMARK 465 ALA B 125 REMARK 465 ALA B 126 REMARK 465 LYS B 235 REMARK 465 GLY B 236 REMARK 465 SER B 237 REMARK 465 THR B 238 REMARK 465 TRP B 239 REMARK 465 LYS B 240 REMARK 465 GLY B 241 REMARK 465 LYS B 242 REMARK 465 SER B 243 REMARK 465 THR B 244 REMARK 465 GLN B 245 REMARK 465 SER B 246 REMARK 465 THR B 247 REMARK 465 GLU B 248 REMARK 465 GLY B 249 REMARK 465 LYS B 250 REMARK 465 THR B 251 REMARK 465 SER B 252 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 169 CB OG REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 VAL B 127 CG1 CG2 REMARK 470 SER B 169 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 24 OE2 GLU B 194 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 197 NE2 GLN A 197 7555 1.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 77 -7.88 -142.24 REMARK 500 LEU A 147 -64.85 -100.51 REMARK 500 SER A 169 -0.05 84.64 REMARK 500 PRO A 195 10.24 -60.66 REMARK 500 TRP B 77 -9.75 -141.81 REMARK 500 PHE B 160 -73.34 -104.40 REMARK 500 SER B 169 1.56 86.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 773 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B 769 DISTANCE = 6.68 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NXX A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NXX B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NUP RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH NMN REMARK 900 RELATED ID: 1NUR RELATED DB: PDB REMARK 900 THE SAME PROTEIN REMARK 900 RELATED ID: 1NUS RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH NMN AND ATP ANALOG REMARK 900 RELATED ID: 1NUT RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ATP ANALOG REMARK 900 RELATED ID: 1NUU RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH NAD DBREF 1NUQ A 1 252 UNP Q96T66 NMNA3_HUMAN 1 252 DBREF 1NUQ B 1 252 UNP Q96T66 NMNA3_HUMAN 1 252 SEQRES 1 A 252 MET LYS SER ARG ILE PRO VAL VAL LEU LEU ALA CYS GLY SEQRES 2 A 252 SER PHE ASN PRO ILE THR ASN MET HIS LEU ARG MET PHE SEQRES 3 A 252 GLU VAL ALA ARG ASP HIS LEU HIS GLN THR GLY MET TYR SEQRES 4 A 252 GLN VAL ILE GLN GLY ILE ILE SER PRO VAL ASN ASP THR SEQRES 5 A 252 TYR GLY LYS LYS ASP LEU ALA ALA SER HIS HIS ARG VAL SEQRES 6 A 252 ALA MET ALA ARG LEU ALA LEU GLN THR SER ASP TRP ILE SEQRES 7 A 252 ARG VAL ASP PRO TRP GLU SER GLU GLN ALA GLN TRP MET SEQRES 8 A 252 GLU THR VAL LYS VAL LEU ARG HIS HIS HIS SER LYS LEU SEQRES 9 A 252 LEU ARG SER PRO PRO GLN MET GLU GLY PRO ASP HIS GLY SEQRES 10 A 252 LYS ALA LEU PHE SER THR PRO ALA ALA VAL PRO GLU LEU SEQRES 11 A 252 LYS LEU LEU CYS GLY ALA ASP VAL LEU LYS THR PHE GLN SEQRES 12 A 252 THR PRO ASN LEU TRP LYS ASP ALA HIS ILE GLN GLU ILE SEQRES 13 A 252 VAL GLU LYS PHE GLY LEU VAL CYS VAL GLY ARG VAL SER SEQRES 14 A 252 HIS ASP PRO LYS GLY TYR ILE ALA GLU SER PRO ILE LEU SEQRES 15 A 252 ARG MET HIS GLN HIS ASN ILE HIS LEU ALA LYS GLU PRO SEQRES 16 A 252 VAL GLN ASN GLU ILE SER ALA THR TYR ILE ARG ARG ALA SEQRES 17 A 252 LEU GLY GLN GLY GLN SER VAL LYS TYR LEU ILE PRO ASP SEQRES 18 A 252 ALA VAL ILE THR TYR ILE LYS ASP HIS GLY LEU TYR THR SEQRES 19 A 252 LYS GLY SER THR TRP LYS GLY LYS SER THR GLN SER THR SEQRES 20 A 252 GLU GLY LYS THR SER SEQRES 1 B 252 MET LYS SER ARG ILE PRO VAL VAL LEU LEU ALA CYS GLY SEQRES 2 B 252 SER PHE ASN PRO ILE THR ASN MET HIS LEU ARG MET PHE SEQRES 3 B 252 GLU VAL ALA ARG ASP HIS LEU HIS GLN THR GLY MET TYR SEQRES 4 B 252 GLN VAL ILE GLN GLY ILE ILE SER PRO VAL ASN ASP THR SEQRES 5 B 252 TYR GLY LYS LYS ASP LEU ALA ALA SER HIS HIS ARG VAL SEQRES 6 B 252 ALA MET ALA ARG LEU ALA LEU GLN THR SER ASP TRP ILE SEQRES 7 B 252 ARG VAL ASP PRO TRP GLU SER GLU GLN ALA GLN TRP MET SEQRES 8 B 252 GLU THR VAL LYS VAL LEU ARG HIS HIS HIS SER LYS LEU SEQRES 9 B 252 LEU ARG SER PRO PRO GLN MET GLU GLY PRO ASP HIS GLY SEQRES 10 B 252 LYS ALA LEU PHE SER THR PRO ALA ALA VAL PRO GLU LEU SEQRES 11 B 252 LYS LEU LEU CYS GLY ALA ASP VAL LEU LYS THR PHE GLN SEQRES 12 B 252 THR PRO ASN LEU TRP LYS ASP ALA HIS ILE GLN GLU ILE SEQRES 13 B 252 VAL GLU LYS PHE GLY LEU VAL CYS VAL GLY ARG VAL SER SEQRES 14 B 252 HIS ASP PRO LYS GLY TYR ILE ALA GLU SER PRO ILE LEU SEQRES 15 B 252 ARG MET HIS GLN HIS ASN ILE HIS LEU ALA LYS GLU PRO SEQRES 16 B 252 VAL GLN ASN GLU ILE SER ALA THR TYR ILE ARG ARG ALA SEQRES 17 B 252 LEU GLY GLN GLY GLN SER VAL LYS TYR LEU ILE PRO ASP SEQRES 18 B 252 ALA VAL ILE THR TYR ILE LYS ASP HIS GLY LEU TYR THR SEQRES 19 B 252 LYS GLY SER THR TRP LYS GLY LYS SER THR GLN SER THR SEQRES 20 B 252 GLU GLY LYS THR SER HET SO4 A 301 5 HET SO4 A 302 5 HET DND A 401 44 HET SO4 B 303 5 HET SO4 B 304 5 HET DND B 402 44 HETNAM SO4 SULFATE ION HETNAM DND NICOTINIC ACID ADENINE DINUCLEOTIDE HETSYN DND DEAMIDO-NAD+ FORMUL 3 SO4 4(O4 S 2-) FORMUL 5 DND 2(C21 H27 N6 O15 P2 1+) FORMUL 9 HOH *282(H2 O) HELIX 1 1 THR A 19 THR A 36 1 18 HELIX 2 2 ALA A 60 GLN A 73 1 14 HELIX 3 3 PRO A 82 GLN A 87 1 6 HELIX 4 4 GLU A 92 LEU A 105 1 14 HELIX 5 5 ALA A 136 PHE A 142 1 7 HELIX 6 6 LYS A 149 PHE A 160 1 12 HELIX 7 7 ASP A 171 SER A 179 1 9 HELIX 8 8 SER A 179 HIS A 185 1 7 HELIX 9 9 SER A 201 GLN A 211 1 11 HELIX 10 10 PRO A 220 HIS A 230 1 11 HELIX 11 11 THR B 19 GLY B 37 1 19 HELIX 12 12 ALA B 60 GLN B 73 1 14 HELIX 13 13 TRP B 83 GLN B 87 5 5 HELIX 14 14 GLU B 92 ARG B 106 1 15 HELIX 15 15 ALA B 136 PHE B 142 1 7 HELIX 16 16 LYS B 149 PHE B 160 1 12 HELIX 17 17 ASP B 171 SER B 179 1 9 HELIX 18 18 SER B 179 MET B 184 1 6 HELIX 19 19 HIS B 185 HIS B 187 5 3 HELIX 20 20 SER B 201 GLN B 211 1 11 HELIX 21 21 PRO B 220 HIS B 230 1 11 SHEET 1 A 6 ILE A 78 VAL A 80 0 SHEET 2 A 6 TYR A 39 PRO A 48 1 N ILE A 46 O ARG A 79 SHEET 3 A 6 ILE A 5 GLY A 13 1 N ALA A 11 O ILE A 45 SHEET 4 A 6 GLU A 129 GLY A 135 1 O LEU A 133 N LEU A 10 SHEET 5 A 6 LEU A 162 VAL A 165 1 O VAL A 163 N LEU A 132 SHEET 6 A 6 ILE A 189 ALA A 192 1 O HIS A 190 N LEU A 162 SHEET 1 B 6 ILE B 78 VAL B 80 0 SHEET 2 B 6 TYR B 39 PRO B 48 1 N GLY B 44 O ARG B 79 SHEET 3 B 6 ILE B 5 GLY B 13 1 N VAL B 7 O ILE B 42 SHEET 4 B 6 GLU B 129 GLY B 135 1 O LEU B 133 N LEU B 10 SHEET 5 B 6 LEU B 162 VAL B 165 1 O VAL B 163 N LEU B 132 SHEET 6 B 6 ILE B 189 ALA B 192 1 O ALA B 192 N CYS B 164 CISPEP 1 ASN A 16 PRO A 17 0 0.28 CISPEP 2 ASN B 16 PRO B 17 0 0.52 SITE 1 AC1 4 LYS A 95 ARG A 98 HIS A 152 HOH A 694 SITE 1 AC2 5 LYS A 56 ALA A 202 THR A 203 HOH A 645 SITE 2 AC2 5 LYS B 140 SITE 1 AC3 26 CYS A 12 GLY A 13 SER A 14 PHE A 15 SITE 2 AC3 26 MET A 21 HIS A 22 TYR A 53 TRP A 90 SITE 3 AC3 26 GLU A 92 THR A 93 CYS A 134 GLY A 135 SITE 4 AC3 26 ASP A 137 VAL A 138 LEU A 147 TRP A 148 SITE 5 AC3 26 ARG A 167 ASN A 198 HOH A 512 HOH A 519 SITE 6 AC3 26 HOH A 534 HOH A 549 HOH A 573 HOH A 589 SITE 7 AC3 26 HOH A 692 HOH A 745 SITE 1 AC4 4 LYS B 95 ARG B 98 HIS B 152 HOH B 774 SITE 1 AC5 5 LYS A 140 SER B 201 ALA B 202 THR B 203 SITE 2 AC5 5 HOH B 726 SITE 1 AC6 28 CYS B 12 GLY B 13 SER B 14 PHE B 15 SITE 2 AC6 28 MET B 21 HIS B 22 VAL B 49 TYR B 53 SITE 3 AC6 28 TRP B 90 GLU B 92 THR B 93 CYS B 134 SITE 4 AC6 28 GLY B 135 ASP B 137 VAL B 138 LEU B 147 SITE 5 AC6 28 TRP B 148 ARG B 167 ASN B 198 GLU B 199 SITE 6 AC6 28 HOH B 504 HOH B 543 HOH B 563 HOH B 572 SITE 7 AC6 28 HOH B 583 HOH B 614 HOH B 674 HOH B 726 CRYST1 79.309 79.309 147.508 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012609 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006779 0.00000