PDB Short entry for 1NVP HEADER TRANSCRIPTION/DNA 04-FEB-03 1NVP TITLE HUMAN TFIIA/TBP/DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*GP*GP*GP*GP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*G)- COMPND 3 3'; COMPND 4 CHAIN: E; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*CP*CP*CP*CP*CP*C)- COMPND 8 3'; COMPND 9 CHAIN: F; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: TATA BOX BINDING PROTEIN; COMPND 13 CHAIN: A; COMPND 14 FRAGMENT: C-TERMINAL 181 AMINO ACIDS; COMPND 15 SYNONYM: TRANSCRIPTION INITIATION FACTOR TFIID, TATA-BOX FACTOR, TATA COMPND 16 SEQUENCE-BINDING PROTEIN, TBP; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: TRANSCRIPTION INITIATION FACTOR IIA ALPHA CHAIN; COMPND 20 CHAIN: B; COMPND 21 FRAGMENT: N-TERMINAL 58 AMINO ACIDS; COMPND 22 SYNONYM: TFIIA P35 AND P19 SUBUNITS, TFIIA-42, TFIIAL; COMPND 23 ENGINEERED: YES; COMPND 24 MOL_ID: 5; COMPND 25 MOLECULE: TRANSCRIPTION INITIATION FACTOR IIA BETA CHAIN; COMPND 26 CHAIN: C; COMPND 27 FRAGMENT: C-TERMINAL 76 AMINO ACIDS; COMPND 28 SYNONYM: TFIIA P35 AND P19 SUBUNITS, TFIIA-42, TFIIAL; COMPND 29 ENGINEERED: YES; COMPND 30 MOL_ID: 6; COMPND 31 MOLECULE: TRANSCRIPTION INITIATION FACTOR IIA GAMMA CHAIN; COMPND 32 CHAIN: D; COMPND 33 SYNONYM: TFIIA P12 SUBUNIT, TFIIA-12, TFIIAS, TFIIA-GAMMA; COMPND 34 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: TBP OR TFIID OR TF2D; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 MOL_ID: 4; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: GTF2A1 OR TF2A1; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 MOL_ID: 5; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 GENE: GTF2A1 OR TF2A1; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 26 MOL_ID: 6; SOURCE 27 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 28 ORGANISM_COMMON: HUMAN; SOURCE 29 ORGANISM_TAXID: 9606; SOURCE 30 GENE: GTF2A2 OR TF2A2; SOURCE 31 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 32 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION REGULATION, DNA, COMPLEX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.BLEICHENBACHER,S.TAN,T.J.RICHMOND REVDAT 3 14-FEB-24 1NVP 1 REMARK SEQADV REVDAT 2 24-FEB-09 1NVP 1 VERSN REVDAT 1 21-OCT-03 1NVP 0 JRNL AUTH M.BLEICHENBACHER,S.TAN,T.J.RICHMOND JRNL TITL NOVEL INTERACTIONS BETWEEN THE COMPONENTS OF HUMAN AND YEAST JRNL TITL 2 TFIIA/TBP/DNA COMPLEXES. JRNL REF J.MOL.BIOL. V. 332 783 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12972251 JRNL DOI 10.1016/S0022-2836(03)00887-8 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 40386 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3268 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6060 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 519 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2936 REMARK 3 NUCLEIC ACID ATOMS : 691 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.37000 REMARK 3 B22 (A**2) : -10.15000 REMARK 3 B33 (A**2) : 12.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : 0.26 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.30 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.250 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.360 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.510 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 6.180 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.480 ; 6.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 REFINED ALSO WITH REFMAC BY MURSHUDOV, VAGIN, DODSON. REMARK 3 NO ELECTRON DENSITY VISIBLE FOR: REMARK 3 RESIDUES 339, CHAIN A REMARK 3 RESIDUES 2-8, CHAIN B REMARK 3 RESIDUES 52-58, CHAIN B REMARK 3 RESIDUES 301-329, CHAIN C REMARK 3 RESIDUE 2, CHAIN D REMARK 3 RESIDUES 100-109, CHAIN D REMARK 3 SIDE CHAINS FOR RESIDUES K12 OF CHAIN B. REMARK 3 SIDE CHAINS FOR RESIDUES D330, R363 OF CHAIN C. REMARK 3 SIDE CHAINS FOR RESIDUES Q50, R51, R53, T85, Q86 OF CHAIN D. REMARK 4 REMARK 4 1NVP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000018256. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-97; 22-DEC-99 REMARK 200 TEMPERATURE (KELVIN) : 110; NULL REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG; ROTATING REMARK 200 ANODE REMARK 200 BEAMLINE : X11; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.916, 0.909; 1.54 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40386 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 39.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.36200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG6000, LITHIUM NITRATE, CALCIUM REMARK 280 CHLORIDE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.81200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.62800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.44200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.62800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.81200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.44200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 339 REMARK 465 ALA B 2 REMARK 465 ASN B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 ASN B 6 REMARK 465 THR B 7 REMARK 465 ASN B 8 REMARK 465 GLN B 52 REMARK 465 SER B 53 REMARK 465 ARG B 54 REMARK 465 ALA B 55 REMARK 465 VAL B 56 REMARK 465 ASP B 57 REMARK 465 GLY B 58 REMARK 465 GLY C 301 REMARK 465 SER C 302 REMARK 465 GLY C 303 REMARK 465 ALA C 304 REMARK 465 GLU C 305 REMARK 465 ASP C 306 REMARK 465 GLY C 307 REMARK 465 GLN C 308 REMARK 465 VAL C 309 REMARK 465 GLU C 310 REMARK 465 GLU C 311 REMARK 465 GLU C 312 REMARK 465 PRO C 313 REMARK 465 LEU C 314 REMARK 465 ASN C 315 REMARK 465 SER C 316 REMARK 465 GLU C 317 REMARK 465 ASP C 318 REMARK 465 ASP C 319 REMARK 465 VAL C 320 REMARK 465 SER C 321 REMARK 465 ASP C 322 REMARK 465 GLU C 323 REMARK 465 GLU C 324 REMARK 465 GLY C 325 REMARK 465 GLN C 326 REMARK 465 GLU C 327 REMARK 465 LEU C 328 REMARK 465 PHE C 329 REMARK 465 ALA D 2 REMARK 465 GLY D 100 REMARK 465 LYS D 101 REMARK 465 ASN D 102 REMARK 465 THR D 103 REMARK 465 GLY D 104 REMARK 465 SER D 105 REMARK 465 ASN D 106 REMARK 465 THR D 107 REMARK 465 THR D 108 REMARK 465 GLU D 109 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 338 O REMARK 470 LYS B 12 CG CD CE NZ REMARK 470 ASP C 330 CG OD1 OD2 REMARK 470 ARG C 363 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 50 CG CD OE1 NE2 REMARK 470 ARG D 51 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 53 CG CD NE CZ NH1 NH2 REMARK 470 THR D 85 OG1 CG2 REMARK 470 GLU D 86 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG E 2 N9 - C1' - C2' ANGL. DEV. = 9.6 DEGREES REMARK 500 DG E 7 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT F 3 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC F 14 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 LEU D 87 N - CA - C ANGL. DEV. = 19.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 249 -166.37 -112.88 REMARK 500 LYS C 346 -129.17 55.14 REMARK 500 ASP C 355 66.75 39.44 REMARK 500 GLN D 4 31.04 -80.15 REMARK 500 ARG D 51 -70.23 -86.06 REMARK 500 ARG D 53 29.84 -156.91 REMARK 500 VAL D 84 -64.00 -2.59 REMARK 500 THR D 85 40.29 -72.05 REMARK 500 GLU D 86 -165.67 71.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG E 1 0.07 SIDE CHAIN REMARK 500 DG E 2 0.07 SIDE CHAIN REMARK 500 DA E 10 0.05 SIDE CHAIN REMARK 500 DC F 15 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1NVP A 159 339 UNP P20226 TBP_HUMAN 159 339 DBREF 1NVP B 2 58 UNP P52655 TF2AA_HUMAN 2 58 DBREF 1NVP C 303 376 UNP P52655 TF2AA_HUMAN 303 376 DBREF 1NVP D 2 109 UNP P52657 T2AG_HUMAN 2 109 DBREF 1NVP E 1 17 PDB 1NVP 1NVP 1 17 DBREF 1NVP F 1 17 PDB 1NVP 1NVP 1 17 SEQADV 1NVP GLY C 301 UNP P52655 CLONING ARTIFACT SEQADV 1NVP SER C 302 UNP P52655 CLONING ARTIFACT SEQRES 1 E 17 DG DG DG DG DG DG DG DC DT DA DT DA DA SEQRES 2 E 17 DA DA DG DG SEQRES 1 F 17 DC DC DT DT DT DT DA DT DA DG DC DC DC SEQRES 2 F 17 DC DC DC DC SEQRES 1 A 181 SER GLY ILE VAL PRO GLN LEU GLN ASN ILE VAL SER THR SEQRES 2 A 181 VAL ASN LEU GLY CYS LYS LEU ASP LEU LYS THR ILE ALA SEQRES 3 A 181 LEU ARG ALA ARG ASN ALA GLU TYR ASN PRO LYS ARG PHE SEQRES 4 A 181 ALA ALA VAL ILE MET ARG ILE ARG GLU PRO ARG THR THR SEQRES 5 A 181 ALA LEU ILE PHE SER SER GLY LYS MET VAL CYS THR GLY SEQRES 6 A 181 ALA LYS SER GLU GLU GLN SER ARG LEU ALA ALA ARG LYS SEQRES 7 A 181 TYR ALA ARG VAL VAL GLN LYS LEU GLY PHE PRO ALA LYS SEQRES 8 A 181 PHE LEU ASP PHE LYS ILE GLN ASN MET VAL GLY SER CYS SEQRES 9 A 181 ASP VAL LYS PHE PRO ILE ARG LEU GLU GLY LEU VAL LEU SEQRES 10 A 181 THR HIS GLN GLN PHE SER SER TYR GLU PRO GLU LEU PHE SEQRES 11 A 181 PRO GLY LEU ILE TYR ARG MET ILE LYS PRO ARG ILE VAL SEQRES 12 A 181 LEU LEU ILE PHE VAL SER GLY LYS VAL VAL LEU THR GLY SEQRES 13 A 181 ALA LYS VAL ARG ALA GLU ILE TYR GLU ALA PHE GLU ASN SEQRES 14 A 181 ILE TYR PRO ILE LEU LYS GLY PHE ARG LYS THR THR SEQRES 1 B 57 ALA ASN SER ALA ASN THR ASN THR VAL PRO LYS LEU TYR SEQRES 2 B 57 ARG SER VAL ILE GLU ASP VAL ILE ASN ASP VAL ARG ASP SEQRES 3 B 57 ILE PHE LEU ASP ASP GLY VAL ASP GLU GLN VAL LEU MET SEQRES 4 B 57 GLU LEU LYS THR LEU TRP GLU ASN LYS LEU MET GLN SER SEQRES 5 B 57 ARG ALA VAL ASP GLY SEQRES 1 C 76 GLY SER GLY ALA GLU ASP GLY GLN VAL GLU GLU GLU PRO SEQRES 2 C 76 LEU ASN SER GLU ASP ASP VAL SER ASP GLU GLU GLY GLN SEQRES 3 C 76 GLU LEU PHE ASP THR GLU ASN VAL VAL VAL CYS GLN TYR SEQRES 4 C 76 ASP LYS ILE HIS ARG SER LYS ASN LYS TRP LYS PHE HIS SEQRES 5 C 76 LEU LYS ASP GLY ILE MET ASN LEU ASN GLY ARG ASP TYR SEQRES 6 C 76 ILE PHE SER LYS ALA ILE GLY ASP ALA GLU TRP SEQRES 1 D 108 ALA TYR GLN LEU TYR ARG ASN THR THR LEU GLY ASN SER SEQRES 2 D 108 LEU GLN GLU SER LEU ASP GLU LEU ILE GLN SER GLN GLN SEQRES 3 D 108 ILE THR PRO GLN LEU ALA LEU GLN VAL LEU LEU GLN PHE SEQRES 4 D 108 ASP LYS ALA ILE ASN ALA ALA LEU ALA GLN ARG VAL ARG SEQRES 5 D 108 ASN ARG VAL ASN PHE ARG GLY SER LEU ASN THR TYR ARG SEQRES 6 D 108 PHE CYS ASP ASN VAL TRP THR PHE VAL LEU ASN ASP VAL SEQRES 7 D 108 GLU PHE ARG GLU VAL THR GLU LEU ILE LYS VAL ASP LYS SEQRES 8 D 108 VAL LYS ILE VAL ALA CYS ASP GLY LYS ASN THR GLY SER SEQRES 9 D 108 ASN THR THR GLU FORMUL 7 HOH *231(H2 O) HELIX 1 1 ASP A 179 ALA A 187 1 9 HELIX 2 2 SER A 226 LEU A 244 1 19 HELIX 3 3 ARG A 269 HIS A 277 1 9 HELIX 4 4 VAL A 317 GLY A 334 1 18 HELIX 5 5 THR B 9 GLY B 33 1 25 HELIX 6 6 ASP B 35 MET B 51 1 17 HELIX 7 7 TYR D 3 ASN D 8 5 6 HELIX 8 8 THR D 9 SER D 25 1 17 HELIX 9 9 THR D 29 ARG D 51 1 23 SHEET 1 A17 SER A 281 SER A 282 0 SHEET 2 A17 LEU A 291 MET A 295 -1 N ILE A 292 O SER A 282 SHEET 3 A17 ILE A 300 ILE A 304 -1 O ILE A 300 N MET A 295 SHEET 4 A17 LYS A 309 ALA A 315 -1 O VAL A 311 N LEU A 303 SHEET 5 A17 LEU A 251 ASP A 263 -1 O MET A 258 N ALA A 315 SHEET 6 A17 GLN A 164 ASN A 173 -1 N GLN A 164 O SER A 261 SHEET 7 A17 LYS A 218 THR A 222 -1 N MET A 219 O VAL A 172 SHEET 8 A17 THR A 209 ILE A 213 -1 O THR A 210 N THR A 222 SHEET 9 A17 PHE A 197 ILE A 204 -1 O VAL A 200 N ILE A 213 SHEET 10 A17 ALA A 190 ASN A 193 -1 O GLU A 191 N ILE A 201 SHEET 11 A17 ARG D 55 CYS D 68 1 O TYR D 65 N ALA A 190 SHEET 12 A17 ARG C 363 GLU C 375 1 O LYS C 369 N VAL D 56 SHEET 13 A17 LYS C 348 LEU C 360 -1 N TRP C 349 O ALA C 374 SHEET 14 A17 VAL C 334 SER C 345 -1 O VAL C 334 N ASN C 359 SHEET 15 A17 LEU D 87 CYS D 98 1 O LYS D 94 N VAL C 335 SHEET 16 A17 VAL D 71 ARG D 82 -1 O TRP D 72 N ALA D 97 SHEET 17 A17 ARG D 55 CYS D 68 -1 O ASN D 57 N ARG D 82 CISPEP 1 GLU A 206 PRO A 207 0 -0.26 CISPEP 2 LYS A 297 PRO A 298 0 -0.40 CRYST1 59.624 90.884 125.256 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016772 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011003 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007984 0.00000