PDB Short entry for 1O0R HEADER TRANSFERASE 24-FEB-03 1O0R TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF BOVINE BETA1,4- TITLE 2 GALACTOSYLTRANSFERASE COMPLEX WITH UDP-GALACTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-1,4-GALACTOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.4.1.90; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET23C KEYWDS BETA1, 4-GALACTOSYLTRANSFERASE, UDP-GAL, CONFORMATION II, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.RAMAKRISHNAN,P.V.BALAJI,P.K.QASBA REVDAT 3 27-OCT-21 1O0R 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1O0R 1 VERSN REVDAT 1 04-MAR-03 1O0R 0 SPRSDE 04-MAR-03 1O0R 1KYB JRNL AUTH B.RAMAKRISHNAN,P.V.BALAJI,P.K.QASBA JRNL TITL CRYSTAL STRUCTURE OF BETA 1,4-GALACTOSYLTRANSFERASE COMPLEX JRNL TITL 2 WITH UDP-GAL REVEALS AN OLIGOSACCHARIDE ACCEPTOR BINDING JRNL TITL 3 SITE JRNL REF J.MOL.BIOL. V. 318 491 2002 JRNL REFN ISSN 0022-2836 JRNL PMID 12051854 JRNL DOI 10.1016/S0022-2836(02)00020-7 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 29711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2966 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4435 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 473 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4436 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 439 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.78000 REMARK 3 B22 (A**2) : -2.20000 REMARK 3 B33 (A**2) : -7.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.30 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.030 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.240 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.980 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.010 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.900 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 60.02 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : UDPG.PAR REMARK 3 PARAMETER FILE 5 : MES_SO4.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : UDPG.TOP REMARK 3 TOPOLOGY FILE 5 : MES_SO4.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1O0R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1000018430. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29843 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, DIOXANE, AMMONIUM SULFATE, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.17800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.23350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.88750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.23350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.17800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.88750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 117 REMARK 465 SER A 118 REMARK 465 MET A 119 REMARK 465 THR A 120 REMARK 465 GLY A 121 REMARK 465 GLY A 122 REMARK 465 GLN A 123 REMARK 465 GLN A 124 REMARK 465 MET A 125 REMARK 465 GLY A 126 REMARK 465 ARG A 127 REMARK 465 GLY A 128 REMARK 465 SER A 129 REMARK 465 SER A 130 REMARK 465 LEU A 131 REMARK 465 ALA B 117 REMARK 465 SER B 118 REMARK 465 MET B 119 REMARK 465 THR B 120 REMARK 465 GLY B 121 REMARK 465 GLY B 122 REMARK 465 GLN B 123 REMARK 465 GLN B 124 REMARK 465 MET B 125 REMARK 465 GLY B 126 REMARK 465 ARG B 127 REMARK 465 GLY B 128 REMARK 465 SER B 129 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER B 130 N - CA - C ANGL. DEV. = -24.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 162 65.37 -117.39 REMARK 500 LEU A 167 124.94 -39.38 REMARK 500 ARG A 189 111.18 -177.36 REMARK 500 PHE A 267 -167.68 -126.98 REMARK 500 ARG B 189 118.44 -168.39 REMARK 500 ASP B 260 8.97 -66.73 REMARK 500 PRO B 355 130.15 -34.40 REMARK 500 TYR B 391 165.86 176.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 254 OD1 REMARK 620 2 MET A 344 SD 97.7 REMARK 620 3 HIS A 347 NE2 78.0 89.0 REMARK 620 4 GDU A 404 O1A 91.3 170.9 93.6 REMARK 620 5 GDU A 404 O2B 170.4 89.9 108.1 81.0 REMARK 620 6 HOH A1011 O 87.8 86.8 164.6 92.9 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 805 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 254 OD1 REMARK 620 2 MET B 344 SD 95.2 REMARK 620 3 HIS B 347 NE2 81.6 93.2 REMARK 620 4 GDU B 806 O1A 96.0 168.6 86.3 REMARK 620 5 GDU B 806 O2B 179.0 85.5 97.7 83.2 REMARK 620 6 HOH B1002 O 87.0 83.3 167.8 99.5 93.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDU A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDU B 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO B 906 REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHAINS A AND B CARRY A N-TERMINAL TAG REMARK 999 CONSISTING OF 13 AMINO ACIDS. DBREF 1O0R A 130 402 UNP P08037 B4GT1_BOVIN 57 329 DBREF 1O0R B 130 402 UNP P08037 B4GT1_BOVIN 57 329 SEQADV 1O0R ALA A 117 UNP P08037 SEE REMARK 999 SEQADV 1O0R SER A 118 UNP P08037 SEE REMARK 999 SEQADV 1O0R MET A 119 UNP P08037 SEE REMARK 999 SEQADV 1O0R THR A 120 UNP P08037 SEE REMARK 999 SEQADV 1O0R GLY A 121 UNP P08037 SEE REMARK 999 SEQADV 1O0R GLY A 122 UNP P08037 SEE REMARK 999 SEQADV 1O0R GLN A 123 UNP P08037 SEE REMARK 999 SEQADV 1O0R GLN A 124 UNP P08037 SEE REMARK 999 SEQADV 1O0R MET A 125 UNP P08037 SEE REMARK 999 SEQADV 1O0R GLY A 126 UNP P08037 SEE REMARK 999 SEQADV 1O0R ARG A 127 UNP P08037 SEE REMARK 999 SEQADV 1O0R GLY A 128 UNP P08037 SEE REMARK 999 SEQADV 1O0R SER A 129 UNP P08037 SEE REMARK 999 SEQADV 1O0R THR A 342 UNP P08037 CYS 269 ENGINEERED MUTATION SEQADV 1O0R ALA B 117 UNP P08037 SEE REMARK 999 SEQADV 1O0R SER B 118 UNP P08037 SEE REMARK 999 SEQADV 1O0R MET B 119 UNP P08037 SEE REMARK 999 SEQADV 1O0R THR B 120 UNP P08037 SEE REMARK 999 SEQADV 1O0R GLY B 121 UNP P08037 SEE REMARK 999 SEQADV 1O0R GLY B 122 UNP P08037 SEE REMARK 999 SEQADV 1O0R GLN B 123 UNP P08037 SEE REMARK 999 SEQADV 1O0R GLN B 124 UNP P08037 SEE REMARK 999 SEQADV 1O0R MET B 125 UNP P08037 SEE REMARK 999 SEQADV 1O0R GLY B 126 UNP P08037 SEE REMARK 999 SEQADV 1O0R ARG B 127 UNP P08037 SEE REMARK 999 SEQADV 1O0R GLY B 128 UNP P08037 SEE REMARK 999 SEQADV 1O0R SER B 129 UNP P08037 SEE REMARK 999 SEQADV 1O0R THR B 342 UNP P08037 CYS 269 ENGINEERED MUTATION SEQRES 1 A 286 ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SER SEQRES 2 A 286 SER LEU THR ALA CYS PRO GLU GLU SER PRO LEU LEU VAL SEQRES 3 A 286 GLY PRO MET LEU ILE GLU PHE ASN ILE PRO VAL ASP LEU SEQRES 4 A 286 LYS LEU VAL GLU GLN GLN ASN PRO LYS VAL LYS LEU GLY SEQRES 5 A 286 GLY ARG TYR THR PRO MET ASP CYS ILE SER PRO HIS LYS SEQRES 6 A 286 VAL ALA ILE ILE ILE PRO PHE ARG ASN ARG GLN GLU HIS SEQRES 7 A 286 LEU LYS TYR TRP LEU TYR TYR LEU HIS PRO ILE LEU GLN SEQRES 8 A 286 ARG GLN GLN LEU ASP TYR GLY ILE TYR VAL ILE ASN GLN SEQRES 9 A 286 ALA GLY GLU SER MET PHE ASN ARG ALA LYS LEU LEU ASN SEQRES 10 A 286 VAL GLY PHE LYS GLU ALA LEU LYS ASP TYR ASP TYR ASN SEQRES 11 A 286 CYS PHE VAL PHE SER ASP VAL ASP LEU ILE PRO MET ASN SEQRES 12 A 286 ASP HIS ASN THR TYR ARG CYS PHE SER GLN PRO ARG HIS SEQRES 13 A 286 ILE SER VAL ALA MET ASP LYS PHE GLY PHE SER LEU PRO SEQRES 14 A 286 TYR VAL GLN TYR PHE GLY GLY VAL SER ALA LEU SER LYS SEQRES 15 A 286 GLN GLN PHE LEU SER ILE ASN GLY PHE PRO ASN ASN TYR SEQRES 16 A 286 TRP GLY TRP GLY GLY GLU ASP ASP ASP ILE TYR ASN ARG SEQRES 17 A 286 LEU ALA PHE ARG GLY MET SER VAL SER ARG PRO ASN ALA SEQRES 18 A 286 VAL ILE GLY LYS THR ARG MET ILE ARG HIS SER ARG ASP SEQRES 19 A 286 LYS LYS ASN GLU PRO ASN PRO GLN ARG PHE ASP ARG ILE SEQRES 20 A 286 ALA HIS THR LYS GLU THR MET LEU SER ASP GLY LEU ASN SEQRES 21 A 286 SER LEU THR TYR MET VAL LEU GLU VAL GLN ARG TYR PRO SEQRES 22 A 286 LEU TYR THR LYS ILE THR VAL ASP ILE GLY THR PRO SER SEQRES 1 B 286 ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SER SEQRES 2 B 286 SER LEU THR ALA CYS PRO GLU GLU SER PRO LEU LEU VAL SEQRES 3 B 286 GLY PRO MET LEU ILE GLU PHE ASN ILE PRO VAL ASP LEU SEQRES 4 B 286 LYS LEU VAL GLU GLN GLN ASN PRO LYS VAL LYS LEU GLY SEQRES 5 B 286 GLY ARG TYR THR PRO MET ASP CYS ILE SER PRO HIS LYS SEQRES 6 B 286 VAL ALA ILE ILE ILE PRO PHE ARG ASN ARG GLN GLU HIS SEQRES 7 B 286 LEU LYS TYR TRP LEU TYR TYR LEU HIS PRO ILE LEU GLN SEQRES 8 B 286 ARG GLN GLN LEU ASP TYR GLY ILE TYR VAL ILE ASN GLN SEQRES 9 B 286 ALA GLY GLU SER MET PHE ASN ARG ALA LYS LEU LEU ASN SEQRES 10 B 286 VAL GLY PHE LYS GLU ALA LEU LYS ASP TYR ASP TYR ASN SEQRES 11 B 286 CYS PHE VAL PHE SER ASP VAL ASP LEU ILE PRO MET ASN SEQRES 12 B 286 ASP HIS ASN THR TYR ARG CYS PHE SER GLN PRO ARG HIS SEQRES 13 B 286 ILE SER VAL ALA MET ASP LYS PHE GLY PHE SER LEU PRO SEQRES 14 B 286 TYR VAL GLN TYR PHE GLY GLY VAL SER ALA LEU SER LYS SEQRES 15 B 286 GLN GLN PHE LEU SER ILE ASN GLY PHE PRO ASN ASN TYR SEQRES 16 B 286 TRP GLY TRP GLY GLY GLU ASP ASP ASP ILE TYR ASN ARG SEQRES 17 B 286 LEU ALA PHE ARG GLY MET SER VAL SER ARG PRO ASN ALA SEQRES 18 B 286 VAL ILE GLY LYS THR ARG MET ILE ARG HIS SER ARG ASP SEQRES 19 B 286 LYS LYS ASN GLU PRO ASN PRO GLN ARG PHE ASP ARG ILE SEQRES 20 B 286 ALA HIS THR LYS GLU THR MET LEU SER ASP GLY LEU ASN SEQRES 21 B 286 SER LEU THR TYR MET VAL LEU GLU VAL GLN ARG TYR PRO SEQRES 22 B 286 LEU TYR THR LYS ILE THR VAL ASP ILE GLY THR PRO SER HET GDU A 404 36 HET MN A 403 1 HET SO4 A 903 5 HET MES A 900 12 HET DIO A 905 6 HET GDU B 806 36 HET MN B 805 1 HET SO4 B 901 5 HET SO4 B 902 5 HET SO4 B 904 5 HET DIO B 906 6 HETNAM GDU GALACTOSE-URIDINE-5'-DIPHOSPHATE HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM DIO 1,4-DIETHYLENE DIOXIDE HETSYN GDU UDP-D-GALACTOPYRANOSE FORMUL 3 GDU 2(C15 H24 N2 O17 P2) FORMUL 4 MN 2(MN 2+) FORMUL 5 SO4 4(O4 S 2-) FORMUL 6 MES C6 H13 N O4 S FORMUL 7 DIO 2(C4 H8 O2) FORMUL 14 HOH *439(H2 O) HELIX 1 1 ASP A 154 ASN A 162 1 9 HELIX 2 2 ARG A 191 GLN A 209 1 19 HELIX 3 3 ASN A 227 LYS A 241 1 15 HELIX 4 4 LYS A 279 GLY A 281 5 3 HELIX 5 5 LYS A 298 ILE A 304 1 7 HELIX 6 6 GLY A 316 ARG A 328 1 13 HELIX 7 7 GLN A 358 HIS A 365 1 8 HELIX 8 8 HIS A 365 MET A 370 1 6 HELIX 9 9 GLY A 374 LEU A 378 5 5 HELIX 10 10 ASP B 154 ASN B 162 1 9 HELIX 11 11 ARG B 191 GLN B 209 1 19 HELIX 12 12 ASN B 227 TYR B 243 1 17 HELIX 13 13 LYS B 279 GLY B 281 5 3 HELIX 14 14 LYS B 298 ILE B 304 1 7 HELIX 15 15 GLY B 316 ARG B 328 1 13 HELIX 16 16 GLN B 358 ALA B 364 1 7 HELIX 17 17 HIS B 365 MET B 370 1 6 HELIX 18 18 GLY B 374 LEU B 378 5 5 SHEET 1 A 7 ARG A 271 HIS A 272 0 SHEET 2 A 7 VAL A 293 SER A 297 -1 O ALA A 295 N ARG A 271 SHEET 3 A 7 CYS A 247 SER A 251 -1 N PHE A 250 O SER A 294 SHEET 4 A 7 LYS A 181 PHE A 188 1 N ILE A 185 O VAL A 249 SHEET 5 A 7 ASP A 212 GLN A 220 1 O GLY A 214 N ILE A 184 SHEET 6 A 7 TYR A 391 ASP A 397 1 O THR A 392 N VAL A 217 SHEET 7 A 7 MET A 381 TYR A 388 -1 N GLN A 386 O LYS A 393 SHEET 1 B 3 LEU A 255 PRO A 257 0 SHEET 2 B 3 LYS A 341 MET A 344 -1 O ARG A 343 N ILE A 256 SHEET 3 B 3 ALA A 276 MET A 277 1 N ALA A 276 O THR A 342 SHEET 1 C 6 ARG B 271 HIS B 272 0 SHEET 2 C 6 VAL B 293 SER B 297 -1 O ALA B 295 N ARG B 271 SHEET 3 C 6 CYS B 247 SER B 251 -1 N PHE B 250 O SER B 294 SHEET 4 C 6 LYS B 181 PHE B 188 1 N ILE B 185 O VAL B 249 SHEET 5 C 6 ASP B 212 GLN B 220 1 O TYR B 216 N ILE B 184 SHEET 6 C 6 ARG B 170 TYR B 171 -1 N TYR B 171 O TYR B 213 SHEET 1 D 7 ARG B 271 HIS B 272 0 SHEET 2 D 7 VAL B 293 SER B 297 -1 O ALA B 295 N ARG B 271 SHEET 3 D 7 CYS B 247 SER B 251 -1 N PHE B 250 O SER B 294 SHEET 4 D 7 LYS B 181 PHE B 188 1 N ILE B 185 O VAL B 249 SHEET 5 D 7 ASP B 212 GLN B 220 1 O TYR B 216 N ILE B 184 SHEET 6 D 7 TYR B 391 ASP B 397 1 O THR B 392 N VAL B 217 SHEET 7 D 7 MET B 381 TYR B 388 -1 N MET B 381 O ASP B 397 SHEET 1 E 3 LEU B 255 PRO B 257 0 SHEET 2 E 3 LYS B 341 MET B 344 -1 O ARG B 343 N ILE B 256 SHEET 3 E 3 ALA B 276 MET B 277 1 N ALA B 276 O THR B 342 SSBOND 1 CYS A 134 CYS A 176 1555 1555 2.04 SSBOND 2 CYS A 247 CYS A 266 1555 1555 2.03 SSBOND 3 CYS B 134 CYS B 176 1555 1555 2.04 SSBOND 4 CYS B 247 CYS B 266 1555 1555 2.03 LINK OD1 ASP A 254 MN MN A 403 1555 1555 2.21 LINK SD MET A 344 MN MN A 403 1555 1555 2.68 LINK NE2 HIS A 347 MN MN A 403 1555 1555 2.22 LINK MN MN A 403 O1A GDU A 404 1555 1555 2.08 LINK MN MN A 403 O2B GDU A 404 1555 1555 2.22 LINK MN MN A 403 O HOH A1011 1555 1555 2.22 LINK OD1 ASP B 254 MN MN B 805 1555 1555 2.28 LINK SD MET B 344 MN MN B 805 1555 1555 2.69 LINK NE2 HIS B 347 MN MN B 805 1555 1555 2.47 LINK MN MN B 805 O1A GDU B 806 1555 1555 2.08 LINK MN MN B 805 O2B GDU B 806 1555 1555 2.28 LINK MN MN B 805 O HOH B1002 1555 1555 2.07 SITE 1 AC1 27 PRO A 187 PHE A 188 ARG A 189 ARG A 191 SITE 2 AC1 27 PHE A 226 ARG A 228 ASP A 252 VAL A 253 SITE 3 AC1 27 ASP A 254 LYS A 279 TYR A 289 GLY A 292 SITE 4 AC1 27 TRP A 314 GLY A 315 GLU A 317 MET A 344 SITE 5 AC1 27 HIS A 347 ASP A 350 MN A 403 HOH A1005 SITE 6 AC1 27 HOH A1011 HOH A1050 HOH A1051 HOH A1069 SITE 7 AC1 27 HOH A1071 HOH A1178 HOH A1238 SITE 1 AC2 26 PRO B 187 PHE B 188 ARG B 189 ARG B 191 SITE 2 AC2 26 PHE B 226 ARG B 228 ASP B 252 VAL B 253 SITE 3 AC2 26 ASP B 254 LYS B 279 GLY B 292 TRP B 314 SITE 4 AC2 26 GLY B 315 GLU B 317 ASP B 318 MET B 344 SITE 5 AC2 26 HIS B 347 ASP B 350 MN B 805 HOH B1036 SITE 6 AC2 26 HOH B1038 HOH B1091 HOH B1100 HOH B1105 SITE 7 AC2 26 HOH B1176 HOH B1231 SITE 1 AC3 5 ASP B 254 MET B 344 HIS B 347 GDU B 806 SITE 2 AC3 5 HOH B1002 SITE 1 AC4 5 ASP A 254 MET A 344 HIS A 347 GDU A 404 SITE 2 AC4 5 HOH A1011 SITE 1 AC5 2 ALA B 221 GLY B 222 SITE 1 AC6 6 ARG B 265 CYS B 266 PHE B 267 SER B 268 SITE 2 AC6 6 HOH B1182 HOH B1450 SITE 1 AC7 5 ARG A 265 CYS A 266 PHE A 267 SER A 268 SITE 2 AC7 5 HOH A1402 SITE 1 AC8 6 HIS B 347 SER B 348 HOH B1298 HOH B1344 SITE 2 AC8 6 HOH B1388 HOH B1424 SITE 1 AC9 8 ALA A 221 GLY A 222 GLU A 223 LEU A 383 SITE 2 AC9 8 GLU A 384 THR A 395 HOH A1217 HOH A1375 SITE 1 BC1 4 LEU A 155 TYR A 388 HOH A1052 HOH A1200 SITE 1 BC2 2 LEU B 155 TYR B 391 CRYST1 50.356 91.775 142.467 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019859 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010896 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007019 0.00000