PDB Short entry for 1O6L HEADER TRANSFERASE 08-OCT-02 1O6L TITLE CRYSTAL STRUCTURE OF AN ACTIVATED AKT/PROTEIN KINASE B TITLE 2 (PKB-PIF CHIMERA) TERNARY COMPLEX WITH AMP-PNP AND GSK3 TITLE 3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAC-BETA SERINE/THREONINE PROTEIN KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 146 - 467; COMPND 5 SYNONYM: PROTEIN KINASE AKT-2, PROTEIN KINASE B BETA COMPND 6 RAC-PK-BETA, PKB BETA; COMPND 7 EC: 2.7.1.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: PKBBETA RESIDUES 146-467 FUSED TO COMPND 11 EEQEMFEDFDYIADW; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: GLYCOGEN SYNTHASE KINASE-3 BETA; COMPND 14 CHAIN: C; COMPND 15 FRAGMENT: PEPTIDE, RESIDUES 3-12; COMPND 16 SYNONYM: GSK-3 BETA; COMPND 17 EC: 2.7.1.37; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS PROTEIN KINASE, TRANSFERASE, SERINE/THREONINE-PROTEIN KINASE EXPDTA X-RAY DIFFRACTION AUTHOR J.YANG,P.CRON,V.M.GOOD,V.THOMPSON,B.A.HEMMINGS,D.BARFORD REVDAT 2 24-FEB-09 1O6L 1 VERSN REVDAT 1 19-NOV-02 1O6L 0 JRNL AUTH J.YANG,P.CRON,V.M.GOOD,V.THOMPSON,B.A.HEMMINGS, JRNL AUTH 2 D.BARFORD JRNL TITL CRYSTAL STRUCTURE OF AN ACTIVATED AKT/PROTEIN JRNL TITL 2 KINASE B TERNARY COMPLEX WITH GSK-3 PEPTIDE AND JRNL TITL 3 AMP-PNP JRNL REF NAT.STRUCT.BIOL. V. 9 940 2002 JRNL REFN ISSN 1072-8368 JRNL PMID 12434148 JRNL DOI 10.1038/NSB870 REMARK 2 REMARK 2 RESOLUTION. 1.6 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1547408.94 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.5 REMARK 3 NUMBER OF REFLECTIONS : 42519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 2132 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 53.6 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4048 REMARK 3 BIN R VALUE (WORKING SET) : 0.264 REMARK 3 BIN FREE R VALUE : 0.312 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 218 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2659 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 415 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.19 REMARK 3 B22 (A**2) : -3.74 REMARK 3 B33 (A**2) : 8.94 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.14 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.15 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.5 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.5 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.51 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODE REMARK 3 KSOL : 0.308674 REMARK 3 BSOL : 17.3128 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN.PARAM REMARK 3 PARAMETER FILE 2 : ANP.PAR REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 450-466 WERE NOT OBSERVED REMARK 4 REMARK 4 1O6L COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-OCT-02. REMARK 100 THE PDBE ID CODE IS EBI-11492. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 150113 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 3.510 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.19800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: CDK1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.6 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN, REMARK 280 20% (W/V) POLYETHYLENE, GLYCOL 4000, 10% (V/V) ISOPROPANOL, REMARK 280 0.1 M HEPES (PH 7.5), 5 MM DTT REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.46800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.65750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.49850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.65750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.46800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.49850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK 300 DETAILS:CHAIN A IS A MONOMER, BUT THIS ENTRY IS REMARK 300 CLASSIFIEDAS A DIMER AS CHAIN A IS IN COMPLEX REMARK 300 WITH A PEPTIDE(CHAIN C), FORMING A DIMERIC REMARK 300 ASSOCIATION. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 PKBBETA RESIDUES 146-467 FUSED TO EEQEMFEDFDYIADW REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 450 REMARK 465 THR A 451 REMARK 465 PRO A 452 REMARK 465 PRO A 453 REMARK 465 ASP A 454 REMARK 465 ARG A 455 REMARK 465 TYR A 456 REMARK 465 ASP A 457 REMARK 465 SER A 458 REMARK 465 LEU A 459 REMARK 465 GLY A 460 REMARK 465 LEU A 461 REMARK 465 LEU A 462 REMARK 465 GLU A 463 REMARK 465 LEU A 464 REMARK 465 ASP A 464A REMARK 465 GLN A 464B REMARK 465 ARG A 464C REMARK 465 GLU A 465 REMARK 465 GLU A 466 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 449 OG1 CG2 REMARK 470 GLN A 467 CG CD OE1 NE2 REMARK 470 GLU A 468 CG CD OE1 OE2 REMARK 470 GLU A 471 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 221 -161.89 -116.28 REMARK 500 ARG A 245 -46.74 71.49 REMARK 500 ARG A 274 -5.60 62.88 REMARK 500 ASP A 293 83.34 58.41 REMARK 500 ASN A 325 -146.34 72.30 REMARK 500 ASP A 399 -113.58 49.66 REMARK 500 GLN A 429 49.43 -88.14 REMARK 500 GLU A 468 -37.68 67.14 REMARK 500 PHE A 470 51.18 -113.45 REMARK 500 ARG C 4 110.51 57.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1481 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP A1480 O2G REMARK 620 2 ASN A 280 OD1 120.0 REMARK 620 3 ASP A 293 OD2 89.7 93.8 REMARK 620 4 ANP A1480 O2A 132.5 107.5 88.5 REMARK 620 5 HOH A2399 O 87.5 89.6 176.4 91.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1482 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2401 O REMARK 620 2 ASP A 293 OD1 101.2 REMARK 620 3 HOH A2400 O 92.0 88.8 REMARK 620 4 ANP A1480 O1G 104.7 151.9 101.1 REMARK 620 5 ANP A1480 O2B 91.8 85.0 173.3 83.3 REMARK 620 6 ASP A 293 OD2 158.8 57.7 87.5 96.1 86.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A1481 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A1482 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A1480 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GZK RELATED DB: PDB REMARK 900 MOLECULAR MECHANISM FOR THE REGULATION OF REMARK 900 PROTEIN KINASE B/AKT BY HYDROPHOBIC MOTIF REMARK 900 PHOSPHORYLATION REMARK 900 RELATED ID: 1GZN RELATED DB: PDB REMARK 900 STRUCTURE OF PKB KINASE DOMAIN REMARK 900 RELATED ID: 1GZO RELATED DB: PDB REMARK 900 STRUCTURE OF PROTEIN KINASE B UNPHOSPHORYLATED REMARK 900 RELATED ID: 1O6K RELATED DB: PDB REMARK 900 STRUCTURE OF ACTIVATED FORM OF PKB KINASE DOMAIN S474D WITH REMARK 900 GSK3 PEPTIDE AND AMP-PNP DBREF 1O6L A 146 464C UNP P31751 AKT2_HUMAN 146 467 DBREF 1O6L A 465 479 PDB 1O6L 1O6L 465 479 DBREF 1O6L C 3 12 UNP P49841 KG3B_HUMAN 3 12 SEQRES 1 A 337 LYS VAL THR MET ASN ASP PHE ASP TYR LEU LYS LEU LEU SEQRES 2 A 337 GLY LYS GLY THR PHE GLY LYS VAL ILE LEU VAL ARG GLU SEQRES 3 A 337 LYS ALA THR GLY ARG TYR TYR ALA MET LYS ILE LEU ARG SEQRES 4 A 337 LYS GLU VAL ILE ILE ALA LYS ASP GLU VAL ALA HIS THR SEQRES 5 A 337 VAL THR GLU SER ARG VAL LEU GLN ASN THR ARG HIS PRO SEQRES 6 A 337 PHE LEU THR ALA LEU LYS TYR ALA PHE GLN THR HIS ASP SEQRES 7 A 337 ARG LEU CYS PHE VAL MET GLU TYR ALA ASN GLY GLY GLU SEQRES 8 A 337 LEU PHE PHE HIS LEU SER ARG GLU ARG VAL PHE THR GLU SEQRES 9 A 337 GLU ARG ALA ARG PHE TYR GLY ALA GLU ILE VAL SER ALA SEQRES 10 A 337 LEU GLU TYR LEU HIS SER ARG ASP VAL VAL TYR ARG ASP SEQRES 11 A 337 ILE LYS LEU GLU ASN LEU MET LEU ASP LYS ASP GLY HIS SEQRES 12 A 337 ILE LYS ILE THR ASP PHE GLY LEU CYS LYS GLU GLY ILE SEQRES 13 A 337 SER ASP GLY ALA THR MET LYS TPO PHE CYS GLY THR PRO SEQRES 14 A 337 GLU TYR LEU ALA PRO GLU VAL LEU GLU ASP ASN ASP TYR SEQRES 15 A 337 GLY ARG ALA VAL ASP TRP TRP GLY LEU GLY VAL VAL MET SEQRES 16 A 337 TYR GLU MET MET CYS GLY ARG LEU PRO PHE TYR ASN GLN SEQRES 17 A 337 ASP HIS GLU ARG LEU PHE GLU LEU ILE LEU MET GLU GLU SEQRES 18 A 337 ILE ARG PHE PRO ARG THR LEU SER PRO GLU ALA LYS SER SEQRES 19 A 337 LEU LEU ALA GLY LEU LEU LYS LYS ASP PRO LYS GLN ARG SEQRES 20 A 337 LEU GLY GLY GLY PRO SER ASP ALA LYS GLU VAL MET GLU SEQRES 21 A 337 HIS ARG PHE PHE LEU SER ILE ASN TRP GLN ASP VAL VAL SEQRES 22 A 337 GLN LYS LYS LEU LEU PRO PRO PHE LYS PRO GLN VAL THR SEQRES 23 A 337 SER GLU VAL ASP THR ARG TYR PHE ASP ASP GLU PHE THR SEQRES 24 A 337 ALA GLN SER ILE THR ILE THR PRO PRO ASP ARG TYR ASP SEQRES 25 A 337 SER LEU GLY LEU LEU GLU LEU ASP GLN ARG GLU GLU GLN SEQRES 26 A 337 GLU MET PHE GLU ASP PHE ASP TYR ILE ALA ASP TRP SEQRES 1 C 10 GLY ARG PRO ARG THR THR SER PHE ALA GLU MODRES 1O6L TPO A 309 THR PHOSPHOTHREONINE HET TPO A 309 11 HET MN A1481 1 HET MN A1482 1 HET ANP A1480 31 HETNAM TPO PHOSPHOTHREONINE HETNAM MN MANGANESE (II) ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 MN 2(MN 2+) FORMUL 5 ANP C10 H17 N6 O12 P3 FORMUL 6 HOH *415(H2 O1) HELIX 1 1 THR A 148 ASN A 150 5 3 HELIX 2 2 LYS A 185 LYS A 191 1 7 HELIX 3 3 GLU A 193 ASN A 206 1 14 HELIX 4 4 GLU A 236 ARG A 245 1 10 HELIX 5 5 THR A 248 ARG A 269 1 22 HELIX 6 6 THR A 313 LEU A 317 5 5 HELIX 7 7 ALA A 318 GLU A 323 5 6 HELIX 8 8 ALA A 330 GLY A 346 1 17 HELIX 9 9 ASP A 354 GLU A 365 1 12 HELIX 10 10 SER A 374 LEU A 385 1 12 HELIX 11 11 ASP A 399 GLU A 405 1 7 HELIX 12 12 HIS A 406 LEU A 410 5 5 HELIX 13 13 ASN A 413 GLN A 419 1 7 HELIX 14 14 ASP A 440 ALA A 445 1 6 SHEET 1 AA 6 PHE A 152 LYS A 160 0 SHEET 2 AA 6 GLY A 164 GLU A 171 -1 O VAL A 166 N LEU A 158 SHEET 3 AA 6 TYR A 177 ARG A 184 -1 O TYR A 178 N VAL A 169 SHEET 4 AA 6 ARG A 224 GLU A 230 -1 O LEU A 225 N LEU A 183 SHEET 5 AA 6 LEU A 215 GLN A 220 -1 N LYS A 216 O VAL A 228 SHEET 6 AA 6 TYR A 475 ILE A 476 -1 O TYR A 475 N ALA A 218 SHEET 1 AB 2 LEU A 281 LEU A 283 0 SHEET 2 AB 2 ILE A 289 ILE A 291 -1 O LYS A 290 N MET A 282 SHEET 1 AC 2 CYS A 311 GLY A 312 0 SHEET 2 AC 2 PHE C 10 ALA C 11 -1 O PHE C 10 N GLY A 312 LINK C LYS A 308 N TPO A 309 1555 1555 1.33 LINK C TPO A 309 N PHE A 310 1555 1555 1.33 LINK MN MN A1481 O2G ANP A1480 1555 1555 2.09 LINK MN MN A1481 OD1 ASN A 280 1555 1555 2.17 LINK MN MN A1481 OD2 ASP A 293 1555 1555 2.24 LINK MN MN A1481 O2A ANP A1480 1555 1555 2.06 LINK MN MN A1481 O HOH A2399 1555 1555 2.23 LINK MN MN A1482 OD1 ASP A 293 1555 1555 2.26 LINK MN MN A1482 O HOH A2400 1555 1555 2.30 LINK MN MN A1482 O1G ANP A1480 1555 1555 2.08 LINK MN MN A1482 O2B ANP A1480 1555 1555 2.15 LINK MN MN A1482 OD2 ASP A 293 1555 1555 2.28 LINK MN MN A1482 O HOH A2401 1555 1555 2.18 SITE 1 AC1 4 ASN A 280 ASP A 293 ANP A1480 HOH A2399 SITE 1 AC2 4 ASP A 293 ANP A1480 HOH A2400 HOH A2401 SITE 1 AC3 29 GLY A 159 VAL A 166 ALA A 179 LYS A 181 SITE 2 AC3 29 THR A 213 MET A 229 GLU A 230 ALA A 232 SITE 3 AC3 29 GLU A 236 LYS A 277 GLU A 279 ASN A 280 SITE 4 AC3 29 MET A 282 THR A 292 ASP A 293 PHE A 439 SITE 5 AC3 29 MN A1481 MN A1482 HOH A2011 HOH A2016 SITE 6 AC3 29 HOH A2393 HOH A2394 HOH A2395 HOH A2396 SITE 7 AC3 29 HOH A2397 HOH A2398 HOH A2399 ARG C 6 SITE 8 AC3 29 SER C 9 CRYST1 44.936 60.997 131.315 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022254 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016394 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007615 0.00000