PDB Short entry for 1OJC HEADER OXIDOREDUCTASE 08-JUL-03 1OJC TITLE HUMAN MONOAMINE OXIDASE B IN COMPLEX WITH TITLE 2 N-(2-AMINOETHYL)-P-CHLOROBENZAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINE OXIDASE [FLAVIN-CONTAINING] B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MONOAMINE OXIDASE, MAO-B; COMPND 5 EC: 1.4.3.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS OXIDOREDUCTASE, FAD-CONTAINING AMINE OXIDASE, MAOB EXPDTA X-RAY DIFFRACTION AUTHOR C.BINDA,D.E.EDMONDSON,A.MATTEVI REVDAT 3 24-FEB-09 1OJC 1 VERSN REVDAT 2 21-AUG-03 1OJC 1 JRNL REVDAT 1 15-AUG-03 1OJC 0 JRNL AUTH C.BINDA,M.LI,F.HUBALEK,N.RESTELLI,D.E.EDMONDSON, JRNL AUTH 2 A.MATTEVI JRNL TITL INSIGHTS INTO THE MODE OF INHIBITION OF HUMAN JRNL TITL 2 MITOCHONDRIAL MONOAMINE OXIDASE B FROM JRNL TITL 3 HIGH-RESOLUTION CRYSTAL STRUCTURES JRNL REF PROC.NATL.ACAD.SCI.USA V. 100 9750 2003 JRNL REFN ISSN 0027-8424 JRNL PMID 12913124 JRNL DOI 10.1073/PNAS.1633804100 REMARK 2 REMARK 2 RESOLUTION. 2.4 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.27 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 45774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1221 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2891 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.2270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7911 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 132 REMARK 3 SOLVENT ATOMS : 416 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.76000 REMARK 3 B22 (A**2) : -0.76000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.402 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.257 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.897 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8251 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11215 ; 1.036 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 991 ; 5.400 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1219 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6200 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3718 ; 0.183 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 504 ; 0.112 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.290 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.033 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4942 ; 0.403 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8008 ; 0.824 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3309 ; 1.286 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3207 ; 2.247 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 496 1 REMARK 3 1 B 3 B 496 1 REMARK 3 2 A 600 A 600 1 REMARK 3 2 B 600 B 600 1 REMARK 3 3 A 601 A 601 1 REMARK 3 3 B 601 B 601 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 4006 ; 0.03 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 4006 ; 0.05 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OJC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUL-03. REMARK 100 THE PDBE ID CODE IS EBI-13014. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47190 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.30300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 65.84500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 111.54000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 65.84500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 111.54000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 65.84500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 111.54000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 65.84500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 111.54000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PHE A 502 REMARK 465 SER A 503 REMARK 465 ALA A 504 REMARK 465 THR A 505 REMARK 465 ALA A 506 REMARK 465 LEU A 507 REMARK 465 GLY A 508 REMARK 465 PHE A 509 REMARK 465 LEU A 510 REMARK 465 ALA A 511 REMARK 465 HIS A 512 REMARK 465 LYS A 513 REMARK 465 ARG A 514 REMARK 465 GLY A 515 REMARK 465 LEU A 516 REMARK 465 LEU A 517 REMARK 465 VAL A 518 REMARK 465 ARG A 519 REMARK 465 VAL A 520 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 497 REMARK 465 LEU B 498 REMARK 465 THR B 499 REMARK 465 THR B 500 REMARK 465 ILE B 501 REMARK 465 PHE B 502 REMARK 465 SER B 503 REMARK 465 ALA B 504 REMARK 465 THR B 505 REMARK 465 ALA B 506 REMARK 465 LEU B 507 REMARK 465 GLY B 508 REMARK 465 PHE B 509 REMARK 465 LEU B 510 REMARK 465 ALA B 511 REMARK 465 HIS B 512 REMARK 465 LYS B 513 REMARK 465 ARG B 514 REMARK 465 GLY B 515 REMARK 465 LEU B 516 REMARK 465 LEU B 517 REMARK 465 VAL B 518 REMARK 465 ARG B 519 REMARK 465 VAL B 520 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 501 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 52 -71.14 66.74 REMARK 500 SER A 59 -48.68 -146.30 REMARK 500 THR A 64 -8.57 77.33 REMARK 500 ALA A 133 70.62 -156.52 REMARK 500 THR A 201 -78.52 -86.57 REMARK 500 ALA A 346 -116.06 56.87 REMARK 500 ASP A 419 -99.86 55.18 REMARK 500 THR A 500 41.22 -83.53 REMARK 500 LYS B 52 -75.33 65.54 REMARK 500 SER B 59 -44.67 -145.42 REMARK 500 THR B 64 -9.62 79.07 REMARK 500 ALA B 133 72.67 -157.56 REMARK 500 THR B 201 -76.97 -85.54 REMARK 500 ALA B 346 -116.69 59.06 REMARK 500 ASP B 419 -100.04 56.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LAZ A1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B1497 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LAZ B1498 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GOS RELATED DB: PDB REMARK 900 HUMAN MONOAMINE OXIDASE B REMARK 900 RELATED ID: 1H8R RELATED DB: PDB REMARK 900 HUMAN MONOAMINE OXIDASE TYPE B (TRUNCATED) REMARK 900 RELATED ID: 1OJ9 RELATED DB: PDB REMARK 900 HUMAN MONOAMINE OXIDASE B IN COMPLEX WITH REMARK 900 1,4-DIPHENYL-2-BUTENE REMARK 900 RELATED ID: 1OJA RELATED DB: PDB REMARK 900 HUMAN MONOAMINE OXIDASE B IN COMPLEX WITH ISATIN REMARK 900 RELATED ID: 1OJB RELATED DB: PDB REMARK 900 HUMAN MONOAMINE OXIDASE B IN COMPLEX WITH REMARK 900 TRANYLCYPROMINE REMARK 900 RELATED ID: 1OJD RELATED DB: PDB REMARK 900 HUMAN MONOAMINE OXIDASE B IN COMPLEX WITH REMARK 900 LAURYLDIMETHYLAMINE-N-OXIDE (LDAO) DBREF 1OJC A 1 1 PDB 1OJC 1OJC 1 1 DBREF 1OJC A 2 520 UNP P27338 AOFB_HUMAN 1 519 DBREF 1OJC B 1 1 PDB 1OJC 1OJC 1 1 DBREF 1OJC B 2 520 UNP P27338 AOFB_HUMAN 1 519 SEQRES 1 A 520 MET SER ASN LYS CYS ASP VAL VAL VAL VAL GLY GLY GLY SEQRES 2 A 520 ILE SER GLY MET ALA ALA ALA LYS LEU LEU HIS ASP SER SEQRES 3 A 520 GLY LEU ASN VAL VAL VAL LEU GLU ALA ARG ASP ARG VAL SEQRES 4 A 520 GLY GLY ARG THR TYR THR LEU ARG ASN GLN LYS VAL LYS SEQRES 5 A 520 TYR VAL ASP LEU GLY GLY SER TYR VAL GLY PRO THR GLN SEQRES 6 A 520 ASN ARG ILE LEU ARG LEU ALA LYS GLU LEU GLY LEU GLU SEQRES 7 A 520 THR TYR LYS VAL ASN GLU VAL GLU ARG LEU ILE HIS HIS SEQRES 8 A 520 VAL LYS GLY LYS SER TYR PRO PHE ARG GLY PRO PHE PRO SEQRES 9 A 520 PRO VAL TRP ASN PRO ILE THR TYR LEU ASP HIS ASN ASN SEQRES 10 A 520 PHE TRP ARG THR MET ASP ASP MET GLY ARG GLU ILE PRO SEQRES 11 A 520 SER ASP ALA PRO TRP LYS ALA PRO LEU ALA GLU GLU TRP SEQRES 12 A 520 ASP ASN MET THR MET LYS GLU LEU LEU ASP LYS LEU CYS SEQRES 13 A 520 TRP THR GLU SER ALA LYS GLN LEU ALA THR LEU PHE VAL SEQRES 14 A 520 ASN LEU CYS VAL THR ALA GLU THR HIS GLU VAL SER ALA SEQRES 15 A 520 LEU TRP PHE LEU TRP TYR VAL LYS GLN CYS GLY GLY THR SEQRES 16 A 520 THR ARG ILE ILE SER THR THR ASN GLY GLY GLN GLU ARG SEQRES 17 A 520 LYS PHE VAL GLY GLY SER GLY GLN VAL SER GLU ARG ILE SEQRES 18 A 520 MET ASP LEU LEU GLY ASP ARG VAL LYS LEU GLU ARG PRO SEQRES 19 A 520 VAL ILE TYR ILE ASP GLN THR ARG GLU ASN VAL LEU VAL SEQRES 20 A 520 GLU THR LEU ASN HIS GLU MET TYR GLU ALA LYS TYR VAL SEQRES 21 A 520 ILE SER ALA ILE PRO PRO THR LEU GLY MET LYS ILE HIS SEQRES 22 A 520 PHE ASN PRO PRO LEU PRO MET MET ARG ASN GLN MET ILE SEQRES 23 A 520 THR ARG VAL PRO LEU GLY SER VAL ILE LYS CYS ILE VAL SEQRES 24 A 520 TYR TYR LYS GLU PRO PHE TRP ARG LYS LYS ASP TYR CYS SEQRES 25 A 520 GLY THR MET ILE ILE ASP GLY GLU GLU ALA PRO VAL ALA SEQRES 26 A 520 TYR THR LEU ASP ASP THR LYS PRO GLU GLY ASN TYR ALA SEQRES 27 A 520 ALA ILE MET GLY PHE ILE LEU ALA HIS LYS ALA ARG LYS SEQRES 28 A 520 LEU ALA ARG LEU THR LYS GLU GLU ARG LEU LYS LYS LEU SEQRES 29 A 520 CYS GLU LEU TYR ALA LYS VAL LEU GLY SER LEU GLU ALA SEQRES 30 A 520 LEU GLU PRO VAL HIS TYR GLU GLU LYS ASN TRP CYS GLU SEQRES 31 A 520 GLU GLN TYR SER GLY GLY CYS TYR THR THR TYR PHE PRO SEQRES 32 A 520 PRO GLY ILE LEU THR GLN TYR GLY ARG VAL LEU ARG GLN SEQRES 33 A 520 PRO VAL ASP ARG ILE TYR PHE ALA GLY THR GLU THR ALA SEQRES 34 A 520 THR HIS TRP SER GLY TYR MET GLU GLY ALA VAL GLU ALA SEQRES 35 A 520 GLY GLU ARG ALA ALA ARG GLU ILE LEU HIS ALA MET GLY SEQRES 36 A 520 LYS ILE PRO GLU ASP GLU ILE TRP GLN SER GLU PRO GLU SEQRES 37 A 520 SER VAL ASP VAL PRO ALA GLN PRO ILE THR THR THR PHE SEQRES 38 A 520 LEU GLU ARG HIS LEU PRO SER VAL PRO GLY LEU LEU ARG SEQRES 39 A 520 LEU ILE GLY LEU THR THR ILE PHE SER ALA THR ALA LEU SEQRES 40 A 520 GLY PHE LEU ALA HIS LYS ARG GLY LEU LEU VAL ARG VAL SEQRES 1 B 520 MET SER ASN LYS CYS ASP VAL VAL VAL VAL GLY GLY GLY SEQRES 2 B 520 ILE SER GLY MET ALA ALA ALA LYS LEU LEU HIS ASP SER SEQRES 3 B 520 GLY LEU ASN VAL VAL VAL LEU GLU ALA ARG ASP ARG VAL SEQRES 4 B 520 GLY GLY ARG THR TYR THR LEU ARG ASN GLN LYS VAL LYS SEQRES 5 B 520 TYR VAL ASP LEU GLY GLY SER TYR VAL GLY PRO THR GLN SEQRES 6 B 520 ASN ARG ILE LEU ARG LEU ALA LYS GLU LEU GLY LEU GLU SEQRES 7 B 520 THR TYR LYS VAL ASN GLU VAL GLU ARG LEU ILE HIS HIS SEQRES 8 B 520 VAL LYS GLY LYS SER TYR PRO PHE ARG GLY PRO PHE PRO SEQRES 9 B 520 PRO VAL TRP ASN PRO ILE THR TYR LEU ASP HIS ASN ASN SEQRES 10 B 520 PHE TRP ARG THR MET ASP ASP MET GLY ARG GLU ILE PRO SEQRES 11 B 520 SER ASP ALA PRO TRP LYS ALA PRO LEU ALA GLU GLU TRP SEQRES 12 B 520 ASP ASN MET THR MET LYS GLU LEU LEU ASP LYS LEU CYS SEQRES 13 B 520 TRP THR GLU SER ALA LYS GLN LEU ALA THR LEU PHE VAL SEQRES 14 B 520 ASN LEU CYS VAL THR ALA GLU THR HIS GLU VAL SER ALA SEQRES 15 B 520 LEU TRP PHE LEU TRP TYR VAL LYS GLN CYS GLY GLY THR SEQRES 16 B 520 THR ARG ILE ILE SER THR THR ASN GLY GLY GLN GLU ARG SEQRES 17 B 520 LYS PHE VAL GLY GLY SER GLY GLN VAL SER GLU ARG ILE SEQRES 18 B 520 MET ASP LEU LEU GLY ASP ARG VAL LYS LEU GLU ARG PRO SEQRES 19 B 520 VAL ILE TYR ILE ASP GLN THR ARG GLU ASN VAL LEU VAL SEQRES 20 B 520 GLU THR LEU ASN HIS GLU MET TYR GLU ALA LYS TYR VAL SEQRES 21 B 520 ILE SER ALA ILE PRO PRO THR LEU GLY MET LYS ILE HIS SEQRES 22 B 520 PHE ASN PRO PRO LEU PRO MET MET ARG ASN GLN MET ILE SEQRES 23 B 520 THR ARG VAL PRO LEU GLY SER VAL ILE LYS CYS ILE VAL SEQRES 24 B 520 TYR TYR LYS GLU PRO PHE TRP ARG LYS LYS ASP TYR CYS SEQRES 25 B 520 GLY THR MET ILE ILE ASP GLY GLU GLU ALA PRO VAL ALA SEQRES 26 B 520 TYR THR LEU ASP ASP THR LYS PRO GLU GLY ASN TYR ALA SEQRES 27 B 520 ALA ILE MET GLY PHE ILE LEU ALA HIS LYS ALA ARG LYS SEQRES 28 B 520 LEU ALA ARG LEU THR LYS GLU GLU ARG LEU LYS LYS LEU SEQRES 29 B 520 CYS GLU LEU TYR ALA LYS VAL LEU GLY SER LEU GLU ALA SEQRES 30 B 520 LEU GLU PRO VAL HIS TYR GLU GLU LYS ASN TRP CYS GLU SEQRES 31 B 520 GLU GLN TYR SER GLY GLY CYS TYR THR THR TYR PHE PRO SEQRES 32 B 520 PRO GLY ILE LEU THR GLN TYR GLY ARG VAL LEU ARG GLN SEQRES 33 B 520 PRO VAL ASP ARG ILE TYR PHE ALA GLY THR GLU THR ALA SEQRES 34 B 520 THR HIS TRP SER GLY TYR MET GLU GLY ALA VAL GLU ALA SEQRES 35 B 520 GLY GLU ARG ALA ALA ARG GLU ILE LEU HIS ALA MET GLY SEQRES 36 B 520 LYS ILE PRO GLU ASP GLU ILE TRP GLN SER GLU PRO GLU SEQRES 37 B 520 SER VAL ASP VAL PRO ALA GLN PRO ILE THR THR THR PHE SEQRES 38 B 520 LEU GLU ARG HIS LEU PRO SER VAL PRO GLY LEU LEU ARG SEQRES 39 B 520 LEU ILE GLY LEU THR THR ILE PHE SER ALA THR ALA LEU SEQRES 40 B 520 GLY PHE LEU ALA HIS LYS ARG GLY LEU LEU VAL ARG VAL HET FAD A1502 53 HET LAZ A1503 13 HET FAD B1497 53 HET LAZ B1498 13 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM LAZ N-(2-AMINOETHYL)-P-CHLOROBENZAMIDE HETSYN LAZ 4-CHLORO-N-(2-HYDROXYETHYL)BENZAMIDE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 3 LAZ 2(C9 H10 CL N O2) FORMUL 5 HOH *416(H2 O1) HELIX 1 1 GLY A 13 SER A 26 1 14 HELIX 2 2 GLN A 65 LEU A 75 1 11 HELIX 3 3 ASN A 108 ARG A 127 1 20 HELIX 4 4 ALA A 133 ALA A 137 5 5 HELIX 5 5 LEU A 139 ASN A 145 1 7 HELIX 6 6 THR A 147 CYS A 156 1 10 HELIX 7 7 THR A 158 THR A 174 1 17 HELIX 8 8 SER A 181 GLN A 191 1 11 HELIX 9 9 GLY A 194 SER A 200 1 7 HELIX 10 10 GLY A 215 GLY A 226 1 12 HELIX 11 11 PRO A 265 ILE A 272 5 8 HELIX 12 12 PRO A 279 ILE A 286 1 8 HELIX 13 13 PRO A 304 LYS A 308 5 5 HELIX 14 14 ALA A 346 ALA A 353 1 8 HELIX 15 15 THR A 356 GLY A 373 1 18 HELIX 16 16 SER A 374 GLU A 379 5 6 HELIX 17 17 CYS A 389 GLU A 391 5 3 HELIX 18 18 GLY A 405 GLY A 411 1 7 HELIX 19 19 ARG A 412 LEU A 414 5 3 HELIX 20 20 GLY A 425 ALA A 429 5 5 HELIX 21 21 TYR A 435 MET A 454 1 20 HELIX 22 22 PRO A 458 ILE A 462 5 5 HELIX 23 23 THR A 480 LEU A 486 1 7 HELIX 24 24 SER A 488 THR A 500 1 13 HELIX 25 25 GLY B 13 SER B 26 1 14 HELIX 26 26 GLN B 65 LEU B 75 1 11 HELIX 27 27 ASN B 108 ARG B 127 1 20 HELIX 28 28 ALA B 133 ALA B 137 5 5 HELIX 29 29 LEU B 139 ASN B 145 1 7 HELIX 30 30 THR B 147 CYS B 156 1 10 HELIX 31 31 THR B 158 THR B 174 1 17 HELIX 32 32 SER B 181 GLN B 191 1 11 HELIX 33 33 GLY B 194 SER B 200 1 7 HELIX 34 34 SER B 214 GLY B 226 1 13 HELIX 35 35 PRO B 265 ILE B 272 5 8 HELIX 36 36 PRO B 279 ILE B 286 1 8 HELIX 37 37 PRO B 304 LYS B 309 5 6 HELIX 38 38 ALA B 346 ALA B 353 1 8 HELIX 39 39 THR B 356 GLY B 373 1 18 HELIX 40 40 SER B 374 GLU B 379 5 6 HELIX 41 41 CYS B 389 GLU B 391 5 3 HELIX 42 42 GLY B 405 GLY B 411 1 7 HELIX 43 43 ARG B 412 LEU B 414 5 3 HELIX 44 44 GLY B 425 ALA B 429 5 5 HELIX 45 45 TYR B 435 MET B 454 1 20 HELIX 46 46 PRO B 458 ILE B 462 5 5 HELIX 47 47 THR B 480 LEU B 486 1 7 HELIX 48 48 SER B 488 ILE B 496 1 9 SHEET 1 AA 5 VAL A 229 LYS A 230 0 SHEET 2 AA 5 VAL A 30 LEU A 33 1 O VAL A 32 N LYS A 230 SHEET 3 AA 5 VAL A 7 VAL A 10 1 O VAL A 7 N VAL A 31 SHEET 4 AA 5 TYR A 259 SER A 262 1 O TYR A 259 N VAL A 8 SHEET 5 AA 5 ILE A 421 PHE A 423 1 O TYR A 422 N SER A 262 SHEET 1 AB 2 THR A 45 LEU A 46 0 SHEET 2 AB 2 VAL A 54 ASP A 55 -1 O VAL A 54 N LEU A 46 SHEET 1 AC 3 TYR A 60 VAL A 61 0 SHEET 2 AC 3 ARG A 208 PHE A 210 -1 O ARG A 208 N VAL A 61 SHEET 3 AC 3 THR A 79 LYS A 81 -1 O TYR A 80 N LYS A 209 SHEET 1 AD 7 LYS A 95 PHE A 99 0 SHEET 2 AD 7 ARG A 87 VAL A 92 -1 O LEU A 88 N PHE A 99 SHEET 3 AD 7 TYR A 311 ILE A 317 1 N CYS A 312 O ARG A 87 SHEET 4 AD 7 TYR A 326 ASP A 329 -1 O THR A 327 N MET A 315 SHEET 5 AD 7 ALA A 339 LEU A 345 -1 O MET A 341 N LEU A 328 SHEET 6 AD 7 VAL A 294 TYR A 300 -1 O ILE A 295 N ILE A 344 SHEET 7 AD 7 HIS A 382 ASN A 387 -1 O HIS A 382 N TYR A 300 SHEET 1 AE 4 MET A 254 ALA A 257 0 SHEET 2 AE 4 VAL A 245 THR A 249 -1 O VAL A 245 N ALA A 257 SHEET 3 AE 4 VAL A 235 ASP A 239 -1 N ILE A 236 O GLU A 248 SHEET 4 AE 4 HIS A 273 ASN A 275 1 O HIS A 273 N ILE A 238 SHEET 1 BA 5 VAL B 229 LYS B 230 0 SHEET 2 BA 5 VAL B 30 LEU B 33 1 O VAL B 32 N LYS B 230 SHEET 3 BA 5 VAL B 7 VAL B 10 1 O VAL B 7 N VAL B 31 SHEET 4 BA 5 TYR B 259 SER B 262 1 O TYR B 259 N VAL B 8 SHEET 5 BA 5 ILE B 421 PHE B 423 1 O TYR B 422 N SER B 262 SHEET 1 BB 2 THR B 45 LEU B 46 0 SHEET 2 BB 2 VAL B 54 ASP B 55 -1 O VAL B 54 N LEU B 46 SHEET 1 BC 3 TYR B 60 VAL B 61 0 SHEET 2 BC 3 ARG B 208 PHE B 210 -1 O ARG B 208 N VAL B 61 SHEET 3 BC 3 THR B 79 LYS B 81 -1 O TYR B 80 N LYS B 209 SHEET 1 BD 7 LYS B 95 PHE B 99 0 SHEET 2 BD 7 ARG B 87 VAL B 92 -1 O LEU B 88 N PHE B 99 SHEET 3 BD 7 TYR B 311 ILE B 317 1 N CYS B 312 O ARG B 87 SHEET 4 BD 7 TYR B 326 ASP B 329 -1 O THR B 327 N MET B 315 SHEET 5 BD 7 ALA B 339 LEU B 345 -1 O MET B 341 N LEU B 328 SHEET 6 BD 7 VAL B 294 TYR B 300 -1 O ILE B 295 N ILE B 344 SHEET 7 BD 7 HIS B 382 ASN B 387 -1 O HIS B 382 N TYR B 300 SHEET 1 BE 4 MET B 254 ALA B 257 0 SHEET 2 BE 4 VAL B 245 THR B 249 -1 O VAL B 245 N ALA B 257 SHEET 3 BE 4 VAL B 235 ASP B 239 -1 N ILE B 236 O GLU B 248 SHEET 4 BE 4 HIS B 273 ASN B 275 1 O HIS B 273 N ILE B 238 LINK SG CYS A 397 C8M FAD A1502 1555 1555 1.63 LINK N5 FAD A1502 C10 LAZ A1503 1555 1555 1.49 LINK SG CYS B 397 C8M FAD B1497 1555 1555 1.63 LINK N5 FAD B1497 C10 LAZ B1498 1555 1555 1.46 CISPEP 1 ASN A 275 PRO A 276 0 1.55 CISPEP 2 CYS A 397 TYR A 398 0 2.93 CISPEP 3 ASN B 275 PRO B 276 0 0.70 CISPEP 4 CYS B 397 TYR B 398 0 2.02 SITE 1 AC1 37 GLY A 11 GLY A 13 ILE A 14 SER A 15 SITE 2 AC1 37 LEU A 33 GLU A 34 ALA A 35 ARG A 36 SITE 3 AC1 37 GLY A 40 GLY A 41 ARG A 42 THR A 43 SITE 4 AC1 37 GLY A 57 GLY A 58 SER A 59 TYR A 60 SITE 5 AC1 37 PRO A 234 VAL A 235 ALA A 263 ILE A 264 SITE 6 AC1 37 TRP A 388 TYR A 393 CYS A 397 TYR A 398 SITE 7 AC1 37 GLY A 425 THR A 426 GLY A 434 TYR A 435 SITE 8 AC1 37 MET A 436 LAZ A1503 HOH A2010 HOH A2023 SITE 9 AC1 37 HOH A2182 HOH A2183 HOH A2184 HOH A2185 SITE 10 AC1 37 HOH A2186 SITE 1 AC2 12 TYR A 60 LEU A 171 CYS A 172 ILE A 198 SITE 2 AC2 12 ILE A 199 GLN A 206 PHE A 343 TYR A 398 SITE 3 AC2 12 TYR A 435 FAD A1502 HOH A2102 HOH A2187 SITE 1 AC3 39 VAL B 10 GLY B 11 GLY B 13 ILE B 14 SITE 2 AC3 39 SER B 15 LEU B 33 GLU B 34 ALA B 35 SITE 3 AC3 39 ARG B 36 GLY B 40 GLY B 41 ARG B 42 SITE 4 AC3 39 THR B 43 GLY B 57 GLY B 58 SER B 59 SITE 5 AC3 39 TYR B 60 PRO B 234 VAL B 235 ALA B 263 SITE 6 AC3 39 ILE B 264 TRP B 388 TYR B 393 CYS B 397 SITE 7 AC3 39 TYR B 398 GLY B 425 THR B 426 GLY B 434 SITE 8 AC3 39 TYR B 435 MET B 436 LAZ B1498 HOH B2018 SITE 9 AC3 39 HOH B2125 HOH B2183 HOH B2224 HOH B2225 SITE 10 AC3 39 HOH B2226 HOH B2227 HOH B2229 SITE 1 AC4 12 TYR B 60 LEU B 171 CYS B 172 ILE B 198 SITE 2 AC4 12 ILE B 199 GLN B 206 PHE B 343 TYR B 398 SITE 3 AC4 12 TYR B 435 FAD B1497 HOH B2228 HOH B2229 CRYST1 131.690 223.080 86.470 90.00 90.00 90.00 C 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007593 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004483 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011565 0.00000 MTRIX1 1 -0.533040 -0.494910 -0.686240 139.78864 1 MTRIX2 1 -0.493000 -0.477490 0.727290 207.91025 1 MTRIX3 1 -0.687620 0.725990 0.010530 -54.47458 1