PDB Short entry for 1OQY HEADER REPLICATION 11-MAR-03 1OQY TITLE STRUCTURE OF THE DNA REPAIR PROTEIN HHR23A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HHR23A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAD23A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS DNA REPAIR, PROTEASOME-MEDIATED DEGRADATION, PROTEIN-PROTEIN KEYWDS 2 INTERACTION, REPLICATION EXPDTA SOLUTION NMR NUMMDL 12 AUTHOR K.J.WALTERS,P.J.LECH,A.M.GOH,Q.WANG,P.M.HOWLEY REVDAT 3 23-FEB-22 1OQY 1 REMARK SEQADV REVDAT 2 24-FEB-09 1OQY 1 VERSN REVDAT 1 21-OCT-03 1OQY 0 JRNL AUTH K.J.WALTERS,P.J.LECH,A.M.GOH,Q.WANG,P.M.HOWLEY JRNL TITL DNA-REPAIR PROTEIN HHR23A ALTERS ITS PROTEIN STRUCTURE UPON JRNL TITL 2 BINDING PROTEASOMAL SUBUNIT S5A JRNL REF PROC.NATL.ACAD.SCI.USA V. 100 12694 2003 JRNL REFN ISSN 0027-8424 JRNL PMID 14557549 JRNL DOI 10.1073/PNAS.1634989100 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851, X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER (X-PLOR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OQY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000018582. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM 13C,15N,2H HHR23A; 20 MM REMARK 210 NAPO4 PH 6.5; 100 MM NACL; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 45 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 12 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 7 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-12 REMARK 465 RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET A 171 H GLY A 174 1.59 REMARK 500 O SER A 161 H GLU A 164 1.60 REMARK 500 HG1 THR A 9 O GLN A 13 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 -162.13 -165.19 REMARK 500 1 VAL A 3 116.01 -167.69 REMARK 500 1 GLN A 12 28.89 80.73 REMARK 500 1 PHE A 15 -145.61 -148.35 REMARK 500 1 ILE A 17 -160.98 -118.32 REMARK 500 1 ARG A 18 -58.18 -161.74 REMARK 500 1 MET A 19 -145.80 38.46 REMARK 500 1 PRO A 21 41.04 -78.92 REMARK 500 1 ASP A 22 27.85 -174.73 REMARK 500 1 PRO A 42 -165.58 -77.68 REMARK 500 1 ALA A 51 29.75 -173.04 REMARK 500 1 ARG A 62 -10.42 74.63 REMARK 500 1 ASN A 70 -166.98 -101.67 REMARK 500 1 VAL A 76 57.41 -147.79 REMARK 500 1 THR A 77 -150.12 -110.29 REMARK 500 1 LYS A 78 73.99 55.03 REMARK 500 1 THR A 79 78.10 -102.52 REMARK 500 1 LYS A 80 76.73 -117.81 REMARK 500 1 ALA A 95 68.71 -118.95 REMARK 500 1 THR A 101 -59.82 -127.66 REMARK 500 1 PRO A 107 -164.72 -73.67 REMARK 500 1 THR A 108 -176.44 55.31 REMARK 500 1 SER A 109 -165.91 -119.38 REMARK 500 1 MET A 111 58.71 -113.36 REMARK 500 1 HIS A 113 64.29 -162.22 REMARK 500 1 ALA A 117 -169.99 51.93 REMARK 500 1 ARG A 119 -163.51 -126.33 REMARK 500 1 GLU A 120 104.08 -58.74 REMARK 500 1 SER A 125 -164.60 52.26 REMARK 500 1 ALA A 129 88.89 -153.68 REMARK 500 1 SER A 140 -54.77 -158.78 REMARK 500 1 SER A 147 47.18 -94.03 REMARK 500 1 ARG A 149 -163.54 -67.67 REMARK 500 1 ASP A 152 -164.56 52.35 REMARK 500 1 LEU A 157 -28.35 -151.23 REMARK 500 1 THR A 159 -137.62 -132.29 REMARK 500 1 GLU A 162 -103.38 41.84 REMARK 500 1 GLU A 176 -150.19 -99.21 REMARK 500 1 TYR A 188 33.30 138.67 REMARK 500 1 ASN A 189 36.97 34.92 REMARK 500 1 LEU A 199 -49.51 -133.96 REMARK 500 1 SER A 205 86.92 -162.50 REMARK 500 1 GLU A 207 71.35 52.26 REMARK 500 1 GLN A 217 53.75 -112.08 REMARK 500 1 GLU A 220 70.51 -165.42 REMARK 500 1 GLU A 225 44.63 -160.45 REMARK 500 1 ALA A 226 64.49 -119.24 REMARK 500 1 GLU A 229 80.44 52.64 REMARK 500 1 LEU A 232 -35.33 -179.31 REMARK 500 1 GLN A 250 -36.24 179.23 REMARK 500 REMARK 500 THIS ENTRY HAS 703 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 18 0.27 SIDE CHAIN REMARK 500 1 ARG A 38 0.31 SIDE CHAIN REMARK 500 1 ARG A 62 0.31 SIDE CHAIN REMARK 500 1 ARG A 65 0.29 SIDE CHAIN REMARK 500 1 ARG A 119 0.25 SIDE CHAIN REMARK 500 1 ARG A 149 0.32 SIDE CHAIN REMARK 500 1 ARG A 177 0.24 SIDE CHAIN REMARK 500 1 ARG A 179 0.23 SIDE CHAIN REMARK 500 1 ARG A 185 0.24 SIDE CHAIN REMARK 500 1 ARG A 193 0.30 SIDE CHAIN REMARK 500 1 ARG A 236 0.27 SIDE CHAIN REMARK 500 1 ARG A 245 0.24 SIDE CHAIN REMARK 500 1 ARG A 275 0.32 SIDE CHAIN REMARK 500 1 ARG A 326 0.21 SIDE CHAIN REMARK 500 2 ARG A 18 0.24 SIDE CHAIN REMARK 500 2 ARG A 38 0.30 SIDE CHAIN REMARK 500 2 ARG A 62 0.24 SIDE CHAIN REMARK 500 2 ARG A 65 0.31 SIDE CHAIN REMARK 500 2 ARG A 119 0.27 SIDE CHAIN REMARK 500 2 ARG A 149 0.28 SIDE CHAIN REMARK 500 2 ARG A 177 0.32 SIDE CHAIN REMARK 500 2 ARG A 179 0.31 SIDE CHAIN REMARK 500 2 ARG A 185 0.27 SIDE CHAIN REMARK 500 2 ARG A 193 0.32 SIDE CHAIN REMARK 500 2 ARG A 236 0.31 SIDE CHAIN REMARK 500 2 ARG A 245 0.19 SIDE CHAIN REMARK 500 2 ARG A 275 0.32 SIDE CHAIN REMARK 500 2 ARG A 326 0.32 SIDE CHAIN REMARK 500 3 ARG A 18 0.27 SIDE CHAIN REMARK 500 3 ARG A 38 0.24 SIDE CHAIN REMARK 500 3 ARG A 62 0.22 SIDE CHAIN REMARK 500 3 ARG A 65 0.20 SIDE CHAIN REMARK 500 3 ARG A 119 0.28 SIDE CHAIN REMARK 500 3 ARG A 149 0.23 SIDE CHAIN REMARK 500 3 ARG A 177 0.28 SIDE CHAIN REMARK 500 3 ARG A 179 0.31 SIDE CHAIN REMARK 500 3 ARG A 185 0.26 SIDE CHAIN REMARK 500 3 ARG A 193 0.29 SIDE CHAIN REMARK 500 3 ARG A 236 0.27 SIDE CHAIN REMARK 500 3 ARG A 245 0.32 SIDE CHAIN REMARK 500 3 ARG A 275 0.25 SIDE CHAIN REMARK 500 3 ARG A 326 0.27 SIDE CHAIN REMARK 500 4 ARG A 18 0.32 SIDE CHAIN REMARK 500 4 ARG A 38 0.23 SIDE CHAIN REMARK 500 4 ARG A 62 0.30 SIDE CHAIN REMARK 500 4 ARG A 65 0.23 SIDE CHAIN REMARK 500 4 ARG A 119 0.27 SIDE CHAIN REMARK 500 4 ARG A 149 0.32 SIDE CHAIN REMARK 500 4 ARG A 177 0.23 SIDE CHAIN REMARK 500 4 ARG A 179 0.31 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 168 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QZE RELATED DB: PDB REMARK 900 HHR23A PROTEIN STRUCTURE BASED ON RESIDUAL DIPOLAR COUPLING DATA REMARK 999 REMARK 999 SEQUENCE THIS PROTEIN WAS GENERATED AS A FUSION PROTEIN AND THE REMARK 999 CLEAVAGE SITE RESULTED IN THE SERINE REPLACEMENT. DBREF 1OQY A 1 363 UNP P54725 RD23A_HUMAN 1 363 SEQADV 1OQY GLY A -4 UNP P54725 CLONING ARTIFACT SEQADV 1OQY PRO A -3 UNP P54725 CLONING ARTIFACT SEQADV 1OQY LEU A -2 UNP P54725 CLONING ARTIFACT SEQADV 1OQY GLY A -1 UNP P54725 CLONING ARTIFACT SEQADV 1OQY SER A 0 UNP P54725 CLONING ARTIFACT SEQADV 1OQY SER A 1 UNP P54725 MET 1 SEE REMARK 999 SEQRES 1 A 368 GLY PRO LEU GLY SER SER ALA VAL THR ILE THR LEU LYS SEQRES 2 A 368 THR LEU GLN GLN GLN THR PHE LYS ILE ARG MET GLU PRO SEQRES 3 A 368 ASP GLU THR VAL LYS VAL LEU LYS GLU LYS ILE GLU ALA SEQRES 4 A 368 GLU LYS GLY ARG ASP ALA PHE PRO VAL ALA GLY GLN LYS SEQRES 5 A 368 LEU ILE TYR ALA GLY LYS ILE LEU SER ASP ASP VAL PRO SEQRES 6 A 368 ILE ARG ASP TYR ARG ILE ASP GLU LYS ASN PHE VAL VAL SEQRES 7 A 368 VAL MET VAL THR LYS THR LYS ALA GLY GLN GLY THR SER SEQRES 8 A 368 ALA PRO PRO GLU ALA SER PRO THR ALA ALA PRO GLU SER SEQRES 9 A 368 SER THR SER PHE PRO PRO ALA PRO THR SER GLY MET SER SEQRES 10 A 368 HIS PRO PRO PRO ALA ALA ARG GLU ASP LYS SER PRO SER SEQRES 11 A 368 GLU GLU SER ALA PRO THR THR SER PRO GLU SER VAL SER SEQRES 12 A 368 GLY SER VAL PRO SER SER GLY SER SER GLY ARG GLU GLU SEQRES 13 A 368 ASP ALA ALA SER THR LEU VAL THR GLY SER GLU TYR GLU SEQRES 14 A 368 THR MET LEU THR GLU ILE MET SER MET GLY TYR GLU ARG SEQRES 15 A 368 GLU ARG VAL VAL ALA ALA LEU ARG ALA SER TYR ASN ASN SEQRES 16 A 368 PRO HIS ARG ALA VAL GLU TYR LEU LEU THR GLY ILE PRO SEQRES 17 A 368 GLY SER PRO GLU PRO GLU HIS GLY SER VAL GLN GLU SER SEQRES 18 A 368 GLN VAL SER GLU GLN PRO ALA THR GLU ALA ALA GLY GLU SEQRES 19 A 368 ASN PRO LEU GLU PHE LEU ARG ASP GLN PRO GLN PHE GLN SEQRES 20 A 368 ASN MET ARG GLN VAL ILE GLN GLN ASN PRO ALA LEU LEU SEQRES 21 A 368 PRO ALA LEU LEU GLN GLN LEU GLY GLN GLU ASN PRO GLN SEQRES 22 A 368 LEU LEU GLN GLN ILE SER ARG HIS GLN GLU GLN PHE ILE SEQRES 23 A 368 GLN MET LEU ASN GLU PRO PRO GLY GLU LEU ALA ASP ILE SEQRES 24 A 368 SER ASP VAL GLU GLY GLU VAL GLY ALA ILE GLY GLU GLU SEQRES 25 A 368 ALA PRO GLN MET ASN TYR ILE GLN VAL THR PRO GLN GLU SEQRES 26 A 368 LYS GLU ALA ILE GLU ARG LEU LYS ALA LEU GLY PHE PRO SEQRES 27 A 368 GLU SER LEU VAL ILE GLN ALA TYR PHE ALA CYS GLU LYS SEQRES 28 A 368 ASN GLU ASN LEU ALA ALA ASN PHE LEU LEU SER GLN ASN SEQRES 29 A 368 PHE ASP ASP GLU HELIX 1 1 THR A 24 LYS A 36 1 13 HELIX 2 2 GLU A 162 SER A 172 1 11 HELIX 3 3 ARG A 177 SER A 187 1 11 HELIX 4 4 HIS A 192 TYR A 197 1 6 HELIX 5 5 LEU A 232 GLN A 238 1 7 HELIX 6 6 GLN A 238 VAL A 247 1 10 HELIX 7 7 ALA A 253 GLN A 260 1 8 HELIX 8 8 ASN A 266 GLU A 286 1 21 HELIX 9 9 GLU A 320 LEU A 330 1 11 HELIX 10 10 GLU A 334 TYR A 341 1 8 HELIX 11 11 ASN A 349 PHE A 360 1 12 SHEET 1 A 5 GLN A 13 ILE A 17 0 SHEET 2 A 5 ILE A 5 THR A 9 -1 N LEU A 7 O PHE A 15 SHEET 3 A 5 VAL A 72 THR A 77 1 O VAL A 72 N LYS A 8 SHEET 4 A 5 GLY A 45 ILE A 49 -1 N LYS A 47 O MET A 75 SHEET 5 A 5 ILE A 54 LEU A 55 -1 O LEU A 55 N LEU A 48 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000