PDB Short entry for 1OTR HEADER CELL CYCLE 22-MAR-03 1OTR TITLE SOLUTION STRUCTURE OF A CUE-UBIQUITIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN CUE2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: AMINO-TERMINAL CUE DOMAIN, RESIDUES 6-54; COMPND 5 SYNONYM: HYPOTHETICAL 50.9 KD PROTEIN IN BUD2-MIF2 INTERGENIC REGION; COMPND 6 HYPOTHETICAL PROTEIN YKL090W; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: UBIQUITIN; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: CUE2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 4932; SOURCE 15 GENE: UBI1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET-3A KEYWDS PROTEIN-PROTEIN COMPLEX, CELL CYCLE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.S.KANG,C.M.DANIELS,W.J.SALERNO,I.RADHAKRISHNAN REVDAT 3 23-FEB-22 1OTR 1 REMARK REVDAT 2 24-FEB-09 1OTR 1 VERSN REVDAT 1 24-JUN-03 1OTR 0 JRNL AUTH R.S.KANG,C.M.DANIELS,S.A.FRANCIS,S.C.SHIH,W.J.SALERNO, JRNL AUTH 2 L.HICKE,I.RADHAKRISHNAN JRNL TITL SOLUTION STRUCTURE OF A CUE-UBIQUITIN COMPLEX REVEALS A JRNL TITL 2 CONSERVED MODE OF UBIQUITIN BINDING JRNL REF CELL(CAMBRIDGE,MASS.) V. 113 621 2003 JRNL REFN ISSN 0092-8674 JRNL PMID 12787503 JRNL DOI 10.1016/S0092-8674(03)00362-3 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1B, ARIA 1.2, CNS 1.1 REMARK 3 AUTHORS : VARIAN (VNMR), LINGE AND NILGES (ARIA), BRUNGER ET REMARK 3 AL. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 3328 DISTANCE RESTRAINTS, REMARK 3 INCLUDING 3238 NOE-DERIVED DISTANCE RESTRAINTS [2560 UNAMBIGUOUS REMARK 3 AND 678 AMBIGUOUS RESTRAINTS], 90 HYDROGEN BONDING DISTANCE REMARK 3 RESTRAINTS, REMARK 3 AND 150 TORSION ANGLE RESTRAINTS. REMARK 4 REMARK 4 1OTR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000018659. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 20 MM SODIUM PHOSPHATE, PH 7.0, REMARK 210 0.2% NAN3 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM U-15N,13C CUE2 + 1 MM REMARK 210 UBIQUITIN; 20 MM SODIUM REMARK 210 PHOSPHATE BUFFER, PH 7.0, 0.2% REMARK 210 NAN3; 1 MM U-15N,13C CUE2 + 1 MM REMARK 210 UBIQUITIN; 20 MM SODIUM REMARK 210 PHOSPHATE BUFFER, PH 7.0, 0.2% REMARK 210 NAN3; 1 MM CUE2 + 1 MM U-15N,13C REMARK 210 UBIQUITIN; 20 MM SODIUM REMARK 210 PHOSPHATE BUFFER, PH 7.0, 0.2% REMARK 210 NAN3; 1 MM CUE2 + 1 MM U-15N,13C REMARK 210 UBIQUITIN; 20 MM SODIUM REMARK 210 PHOSPHATE BUFFER, PH 7.0, 0.2% REMARK 210 NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_13C-FILTERED,_13C-EDITED_NOESY; 2D_DOUBLE_ REMARK 210 HALF-FILTERED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 98.0 AND 2000, CNS 1.1, REMARK 210 ARIA 1.2 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS AND REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : THE SUBMITTED CONFORMER MODELS REMARK 210 ARE THE 20 STRUCTURES WITH THE REMARK 210 LOWEST RESTRAINT ENERGIES, REMARK 210 RESTRAINT VIOLATIONS, AND RMS REMARK 210 DEVIATIONS FROM IDEAL COVALENT REMARK 210 GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 7 -39.04 -151.63 REMARK 500 1 ASP A 8 39.48 -150.67 REMARK 500 1 ALA A 22 -41.22 -163.53 REMARK 500 1 ASN A 35 33.65 -77.74 REMARK 500 1 ASN A 50 45.78 -79.87 REMARK 500 1 ASP A 52 134.98 -176.67 REMARK 500 1 ASP B 21 -126.88 -83.06 REMARK 500 1 LYS B 48 138.94 -173.19 REMARK 500 1 GLN B 62 -154.64 -76.75 REMARK 500 1 ARG B 74 -141.22 59.27 REMARK 500 2 ASP A 8 54.60 -174.81 REMARK 500 2 ALA A 22 -44.38 -168.37 REMARK 500 2 ASN A 36 -72.96 64.57 REMARK 500 2 ASN A 37 -30.33 -162.09 REMARK 500 2 ASP A 38 123.04 -39.27 REMARK 500 2 LYS A 48 43.00 -80.83 REMARK 500 2 ASN A 50 39.74 -81.05 REMARK 500 2 ASP A 52 129.89 63.97 REMARK 500 2 ASP B 21 -123.38 -84.29 REMARK 500 2 THR B 22 141.35 -171.72 REMARK 500 2 TYR B 59 31.91 -85.74 REMARK 500 2 LYS B 63 140.74 -179.93 REMARK 500 2 ARG B 74 133.34 64.31 REMARK 500 3 ASP A 7 -47.19 75.78 REMARK 500 3 ALA A 22 -39.76 -165.74 REMARK 500 3 ASN A 35 38.69 -81.23 REMARK 500 3 LYS A 48 39.77 -78.93 REMARK 500 3 ASN A 50 41.60 -90.07 REMARK 500 3 ASP A 51 133.95 -176.15 REMARK 500 3 ASP A 52 132.94 -171.09 REMARK 500 3 LYS B 11 116.12 -164.68 REMARK 500 3 SER B 20 36.60 -92.39 REMARK 500 3 ASP B 21 -134.04 -80.52 REMARK 500 3 THR B 22 143.70 -175.94 REMARK 500 3 GLU B 34 -32.19 -140.40 REMARK 500 3 ALA B 46 -34.25 69.43 REMARK 500 3 LEU B 50 35.96 -82.87 REMARK 500 3 GLU B 51 -167.26 51.16 REMARK 500 3 ARG B 74 46.87 -173.63 REMARK 500 4 ASP A 7 138.12 69.30 REMARK 500 4 ASP A 8 40.03 -76.06 REMARK 500 4 ALA A 22 -42.93 -166.93 REMARK 500 4 ASN A 35 37.48 -77.64 REMARK 500 4 ASN A 50 -133.15 -69.62 REMARK 500 4 ASP A 51 -24.32 71.79 REMARK 500 4 LYS A 53 -43.31 -169.57 REMARK 500 4 LEU B 8 102.13 -42.60 REMARK 500 4 LYS B 11 139.28 -172.88 REMARK 500 4 SER B 19 43.54 -77.35 REMARK 500 4 SER B 20 49.68 -168.58 REMARK 500 REMARK 500 THIS ENTRY HAS 272 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1OTR A 6 54 UNP P36075 CUE2_YEAST 6 54 DBREF 1OTR B 1 76 UNP P61864 UBIQ_YEAST 1 76 SEQRES 1 A 49 ASN ASP ASP HIS GLU SER LYS LEU SER ILE LEU MET ASP SEQRES 2 A 49 MET PHE PRO ALA ILE SER LYS SER LYS LEU GLN VAL HIS SEQRES 3 A 49 LEU LEU GLU ASN ASN ASN ASP LEU ASP LEU THR ILE GLY SEQRES 4 A 49 LEU LEU LEU LYS GLU ASN ASP ASP LYS SER SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU SER SER ASP THR ILE ASP ASN VAL SEQRES 3 B 76 LYS SER LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HELIX 1 1 HIS A 9 MET A 19 1 11 HELIX 2 2 LYS A 25 GLU A 34 1 10 HELIX 3 3 LEU A 39 LEU A 47 1 9 HELIX 4 4 ILE B 23 GLU B 34 1 12 HELIX 5 5 LEU B 56 TYR B 59 1 4 SHEET 1 A 5 THR B 12 GLU B 16 0 SHEET 2 A 5 GLN B 2 THR B 7 -1 N ILE B 3 O LEU B 15 SHEET 3 A 5 THR B 66 LEU B 71 1 O LEU B 67 N PHE B 4 SHEET 4 A 5 GLN B 41 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 A 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000