PDB Short entry for 1OV2 HEADER RECEPTOR ASSOCIATED PROTEIN 25-MAR-03 1OV2 TITLE ENSEMBLE OF THE SOLUTION STRUCTURES OF DOMAIN ONE OF RECEPTOR TITLE 2 ASSOCIATED PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-2-MACROGLOBULIN RECEPTOR-ASSOCIATED PROTEIN COMPND 3 PRECURSOR; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: DOMAIN 1 OF RECEPTOR ASSOCIATED PROTEIN; COMPND 6 SYNONYM: ALPHA-2-MRAP, LOW DENSITY LIPOPROTEIN RECEPTOR-RELATED COMPND 7 PROTEIN- ASSOCIATED PROTEIN 1, RAP; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LRPAP1 OR A2MRAP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS HELICAL PROTEIN, RECEPTOR ASSOCIATED PROTEIN EXPDTA SOLUTION NMR NUMMDL 39 AUTHOR Y.WU,M.MIGLIORINI,P.YU,D.K.STRICKLAND,Y.X.WANG REVDAT 4 23-FEB-22 1OV2 1 REMARK REVDAT 3 24-FEB-09 1OV2 1 VERSN REVDAT 2 22-FEB-05 1OV2 1 JRNL REVDAT 1 06-APR-04 1OV2 0 JRNL AUTH Y.WU,M.MIGLIORINI,P.YU,D.K.STRICKLAND,Y.X.WANG JRNL TITL 1H, 13C AND 15N RESONANCE ASSIGNMENTS OF DOMAIN 1 OF JRNL TITL 2 RECEPTOR ASSOCIATED PROTEIN. JRNL REF J.BIOMOL.NMR V. 26 187 2003 JRNL REFN ISSN 0925-2738 JRNL PMID 12766414 JRNL DOI 10.1023/A:1023534107920 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 1, INTERHLX 1 REMARK 3 AUTHORS : SCHWIETERS, C. (XPLOR-NIH), K. YAP, UNIVERSITY OF REMARK 3 TORONTO, CANANDA (INTERHLX) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES WERE DETERMINED USING REMARK 3 MULTI-DIMENSION HETERO-NUCLEAR NMR SPECTROSCOPY. THE CONSTRAINTS REMARK 3 CONSIST OF NOE, DIHEADRAL, J-COUPLING, CHEMICAL SHIFT, REMARK 3 CONFORMATIONAL DATA BASE AS WELL AS TWO SETSOF DIPOLAR COUPLINGS REMARK 3 MEASURED FROM TWO DIFFERENT ALIGNMENT MEDIA. REMARK 4 REMARK 4 1OV2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000018693. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303.5 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 MM NACL, 75 MM NAPI REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : ~1.2 MM OF 13C/15N ISOTOPE REMARK 210 LABELED DOMAIN 1 OF RECEPTOR REMARK 210 ASSOCIATED PROTEIN REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; HNHA; 4D_13C/ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1, INTERHLX 1 REMARK 210 METHOD USED : TORSIONA ANGLE DYNAMICS AND REMARK 210 SIMULATED ANEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 39 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-39 REMARK 465 RES C SSSEQI REMARK 465 TYR A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 GLU A 4 REMARK 465 LYS A 5 REMARK 465 ASN A 6 REMARK 465 GLN A 7 REMARK 465 PRO A 8 REMARK 465 LYS A 9 REMARK 465 PRO A 10 REMARK 465 SER A 11 REMARK 465 PRO A 12 REMARK 465 LYS A 13 REMARK 465 ARG A 14 REMARK 465 GLU A 15 REMARK 465 SER A 16 REMARK 465 VAL A 99 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 3 GLN A 98 C O REMARK 470 4 GLN A 98 O REMARK 470 37 GLN A 98 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 68 H LYS A 73 1.42 REMARK 500 O GLU A 74 H ILE A 78 1.59 REMARK 500 O TRP A 59 H LEU A 62 1.60 REMARK 500 O GLU A 72 N ALA A 75 2.13 REMARK 500 O GLU A 18 O PHE A 20 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 19 -59.78 -11.17 REMARK 500 1 PHE A 20 -166.18 -114.85 REMARK 500 1 HIS A 36 62.64 61.06 REMARK 500 1 PRO A 38 156.53 -46.51 REMARK 500 1 ASP A 91 -112.95 -83.06 REMARK 500 1 LYS A 93 -30.48 -178.70 REMARK 500 1 ASP A 95 -145.23 -95.68 REMARK 500 1 ALA A 96 -100.07 27.61 REMARK 500 1 ARG A 97 155.14 -45.45 REMARK 500 2 GLU A 19 -58.30 -10.78 REMARK 500 2 PHE A 20 -165.38 -115.44 REMARK 500 2 HIS A 36 61.47 60.84 REMARK 500 2 PRO A 38 156.96 -46.30 REMARK 500 2 ASP A 91 60.24 28.55 REMARK 500 2 LYS A 93 -149.14 -71.33 REMARK 500 2 LYS A 94 -127.82 -154.90 REMARK 500 2 ASP A 95 -127.71 -137.49 REMARK 500 2 ALA A 96 -66.34 94.06 REMARK 500 2 ARG A 97 45.00 -98.15 REMARK 500 3 GLU A 18 -164.67 -116.92 REMARK 500 3 PHE A 20 -168.82 -120.22 REMARK 500 3 HIS A 36 61.53 61.22 REMARK 500 3 PRO A 38 157.84 -46.46 REMARK 500 3 ASP A 91 13.78 -53.94 REMARK 500 3 LYS A 93 131.28 -1.72 REMARK 500 3 LYS A 94 -58.04 163.51 REMARK 500 3 ASP A 95 -137.61 -74.81 REMARK 500 4 GLU A 18 148.66 53.98 REMARK 500 4 GLU A 19 -50.07 -11.96 REMARK 500 4 PHE A 20 -167.00 -110.39 REMARK 500 4 HIS A 36 99.75 42.01 REMARK 500 4 ASP A 91 11.32 -60.34 REMARK 500 4 LYS A 93 -114.74 -175.00 REMARK 500 4 LYS A 94 -165.81 94.06 REMARK 500 4 ALA A 96 51.90 -63.24 REMARK 500 4 ARG A 97 -74.99 -113.26 REMARK 500 5 GLU A 19 -60.74 -13.06 REMARK 500 5 PHE A 20 -165.34 -115.97 REMARK 500 5 HIS A 36 63.33 62.06 REMARK 500 5 PRO A 38 155.39 -46.86 REMARK 500 5 ASP A 91 -0.27 -50.98 REMARK 500 5 LYS A 93 -62.50 -140.66 REMARK 500 5 ARG A 97 -72.66 -174.51 REMARK 500 6 GLU A 18 152.70 154.95 REMARK 500 6 HIS A 36 97.39 45.32 REMARK 500 6 ASP A 91 -1.49 -52.66 REMARK 500 6 LYS A 94 62.19 2.23 REMARK 500 6 ASP A 95 157.68 -31.33 REMARK 500 6 ALA A 96 121.21 -38.13 REMARK 500 6 ARG A 97 -65.71 -102.58 REMARK 500 REMARK 500 THIS ENTRY HAS 289 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OP1 RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE OF THE ENSEMBLE OF 39 STRUCTURES DBREF 1OV2 A 1 99 UNP P30533 AMRP_HUMAN 35 133 SEQRES 1 A 99 TYR SER ARG GLU LYS ASN GLN PRO LYS PRO SER PRO LYS SEQRES 2 A 99 ARG GLU SER GLY GLU GLU PHE ARG MET GLU LYS LEU ASN SEQRES 3 A 99 GLN LEU TRP GLU LYS ALA GLN ARG LEU HIS LEU PRO PRO SEQRES 4 A 99 VAL ARG LEU ALA GLU LEU HIS ALA ASP LEU LYS ILE GLN SEQRES 5 A 99 GLU ARG ASP GLU LEU ALA TRP LYS LYS LEU LYS LEU ASP SEQRES 6 A 99 GLY LEU ASP GLU ASP GLY GLU LYS GLU ALA ARG LEU ILE SEQRES 7 A 99 ARG ASN LEU ASN VAL ILE LEU ALA LYS TYR GLY LEU ASP SEQRES 8 A 99 GLY LYS LYS ASP ALA ARG GLN VAL HELIX 1 1 MET A 22 HIS A 36 1 15 HELIX 2 2 PRO A 38 GLY A 66 1 29 HELIX 3 3 GLY A 71 GLY A 89 1 19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000