PDB Short entry for 1OWT HEADER APOPTOSIS 30-MAR-03 1OWT TITLE STRUCTURE OF THE ALZHEIMER'S DISEASE AMYLOID PRECURSOR PROTEIN COPPER TITLE 2 BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID BETA A4 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: COPPER BINDING DOMAIN; COMPND 5 SYNONYM: AMYLOID PRECURSOR PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APP; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: GS115; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PIC9 KEYWDS BETA-ALPHA-BETA-BETA, APOPTOSIS EXPDTA SOLUTION NMR NUMMDL 21 AUTHOR K.J.BARNHAM,W.J.MCKINSTRY,G.MULTHAUP,D.GALATIS,C.J.MORTON, AUTHOR 2 C.C.CURTAIN,N.A.WILLIAMSON,A.R.WHITE,M.G.HINDS,R.S.NORTON, AUTHOR 3 K.BEYREUTHER,C.L.MASTERS,M.W.PARKER,R.CAPPAI REVDAT 3 23-FEB-22 1OWT 1 REMARK REVDAT 2 24-FEB-09 1OWT 1 VERSN REVDAT 1 13-MAY-03 1OWT 0 JRNL AUTH K.J.BARNHAM,W.J.MCKINSTRY,G.MULTHAUP,D.GALATIS,C.J.MORTON, JRNL AUTH 2 C.C.CURTAIN,N.A.WILLIAMSON,A.R.WHITE,M.G.HINDS,R.S.NORTON, JRNL AUTH 3 K.BEYREUTHER,C.L.MASTERS,M.W.PARKER,R.CAPPAI JRNL TITL STRUCTURE OF THE ALZHEIMER'S DISEASE AMYLOID PRECURSOR JRNL TITL 2 PROTEIN COPPER BINDING DOMAIN. A REGULATOR OF NEURONAL JRNL TITL 3 COPPER HOMEOSTASIS. JRNL REF J.BIOL.CHEM. V. 278 17401 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12611883 JRNL DOI 10.1074/JBC.M300629200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0, CNS 1.0 REMARK 3 AUTHORS : BRUNGER (CNS), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1233 NOE RESTRAINTS, 111 ANGLE REMARK 3 RESTRAINTS REMARK 4 REMARK 4 1OWT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000018750. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 0.3 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5MM CUBD U-15N,13C; 20MM REMARK 210 PHOSPHATE BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DPX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY AND SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 130 -94.06 -86.57 REMARK 500 1 ASP A 131 -101.57 -85.13 REMARK 500 1 LEU A 136 74.84 -116.83 REMARK 500 1 MET A 141 34.67 -74.61 REMARK 500 1 LYS A 161 -137.53 -96.12 REMARK 500 1 SER A 162 51.75 -119.98 REMARK 500 1 LEU A 171 -162.80 -113.38 REMARK 500 1 LEU A 172 66.56 39.42 REMARK 500 2 PRO A 130 -157.43 -76.25 REMARK 500 2 MET A 141 32.60 -74.25 REMARK 500 2 LYS A 161 -138.33 -104.15 REMARK 500 2 LEU A 171 -165.72 -121.03 REMARK 500 3 LEU A 128 -152.06 -139.19 REMARK 500 3 PRO A 130 -92.91 -83.77 REMARK 500 3 ASP A 131 -101.20 -85.59 REMARK 500 3 MET A 141 33.27 -74.35 REMARK 500 3 LYS A 161 -137.49 -94.59 REMARK 500 3 SER A 162 52.32 -118.81 REMARK 500 3 LEU A 171 -167.47 -109.80 REMARK 500 3 LEU A 172 73.52 37.40 REMARK 500 4 LEU A 128 -154.30 -128.94 REMARK 500 4 PRO A 130 -98.75 -82.25 REMARK 500 4 ASP A 131 -101.40 -85.45 REMARK 500 4 MET A 141 35.89 -73.91 REMARK 500 4 LYS A 161 -136.86 -98.51 REMARK 500 4 LEU A 171 -159.96 -116.51 REMARK 500 5 LEU A 128 -147.83 -132.64 REMARK 500 5 PRO A 130 -92.63 -81.53 REMARK 500 5 ASP A 131 -102.68 -85.69 REMARK 500 5 MET A 141 36.76 -74.57 REMARK 500 5 LYS A 161 -137.05 -94.37 REMARK 500 5 SER A 162 51.13 -118.60 REMARK 500 5 LEU A 171 -165.41 -111.94 REMARK 500 6 ASP A 125 -151.35 -98.83 REMARK 500 6 LEU A 128 -148.97 -135.27 REMARK 500 6 PRO A 130 -89.31 -86.65 REMARK 500 6 ASP A 131 -101.46 -85.09 REMARK 500 6 LEU A 136 79.43 -120.00 REMARK 500 6 MET A 141 28.56 -71.16 REMARK 500 6 LYS A 161 -137.91 -94.84 REMARK 500 6 SER A 162 50.29 -117.93 REMARK 500 6 LEU A 171 -161.17 -110.34 REMARK 500 7 LEU A 128 -151.15 -139.54 REMARK 500 7 PRO A 130 -88.24 -86.47 REMARK 500 7 ASP A 131 -101.04 -85.00 REMARK 500 7 MET A 141 32.53 -74.22 REMARK 500 7 LYS A 161 -138.68 -106.89 REMARK 500 8 LEU A 128 -148.52 -134.11 REMARK 500 8 PRO A 130 -88.47 -85.27 REMARK 500 8 ASP A 131 -101.44 -85.29 REMARK 500 REMARK 500 THIS ENTRY HAS 155 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1OWT A 124 189 UNP P05067 A4_HUMAN 124 189 SEQRES 1 A 66 SER ASP ALA LEU LEU VAL PRO ASP LYS CYS LYS PHE LEU SEQRES 2 A 66 HIS GLN GLU ARG MET ASP VAL CYS GLU THR HIS LEU HIS SEQRES 3 A 66 TRP HIS THR VAL ALA LYS GLU THR CYS SER GLU LYS SER SEQRES 4 A 66 THR ASN LEU HIS ASP TYR GLY MET LEU LEU PRO CYS GLY SEQRES 5 A 66 ILE ASP LYS PHE ARG GLY VAL GLU PHE VAL CYS CYS PRO SEQRES 6 A 66 LEU HELIX 1 1 HIS A 147 GLU A 160 1 14 SHEET 1 A 3 LYS A 134 GLU A 139 0 SHEET 2 A 3 GLY A 181 PRO A 188 -1 O CYS A 186 N LYS A 134 SHEET 3 A 3 THR A 163 ASP A 167 -1 N ASN A 164 O CYS A 187 SHEET 1 B 2 GLU A 145 THR A 146 0 SHEET 2 B 2 LYS A 178 PHE A 179 -1 O PHE A 179 N GLU A 145 SSBOND 1 CYS A 133 CYS A 187 1555 1555 2.03 SSBOND 2 CYS A 144 CYS A 174 1555 1555 2.03 SSBOND 3 CYS A 158 CYS A 186 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000