PDB Short entry for 1P1A HEADER DNA BINDING PROTEIN 11-APR-03 1P1A TITLE NMR STRUCTURE OF UBIQUITIN-LIKE DOMAIN OF HHR23B COMPND MOL_ID: 1; COMPND 2 MOLECULE: UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBIQUITIN-LIKE DOMAIN; COMPND 5 SYNONYM: RAD23, HHR23B; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HHR23B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS UBIQUITIN-LIKE, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 14 AUTHOR K.S.RYU,K.J.LEE,S.H.BAE,B.K.KIM,K.A.KIM,B.S.CHOI REVDAT 2 24-FEB-09 1P1A 1 VERSN REVDAT 1 13-JUL-04 1P1A 0 JRNL AUTH K.S.RYU,K.J.LEE,S.H.BAE,B.K.KIM,K.A.KIM,B.S.CHOI JRNL TITL BINDING SURFACE MAPPING OF INTRA- AND INTERDOMAIN JRNL TITL 2 INTERACTIONS AMONG HHR23B, UBIQUITIN, AND JRNL TITL 3 POLYUBIQUITIN BINDING SITE 2 OF S5A JRNL REF J.BIOL.CHEM. V. 278 36621 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12832454 JRNL DOI 10.1074/JBC.M304628200 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 7 REMARK 3 AUTHORS : PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON, REMARK 3 SEIBEL,SINGH,WEINER,KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P1A COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-APR-03. REMARK 100 THE RCSB ID CODE IS RCSB018890. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 303; 303 REMARK 210 PH : 6.0; 6.0; 6.0 REMARK 210 IONIC STRENGTH : 50MM SODIUM PHOSPHATE + 100MM REMARK 210 SODIUM CHLORIDE; 50MM SODIUM REMARK 210 PHOSPHATE + 100MM SODIUM REMARK 210 CHLORIDE; 50MM SODIUM REMARK 210 PHOSPHATE + 100MM SODIUM REMARK 210 CHLORIDE REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM UBL DOMAIN 15N,13C; 50MM REMARK 210 SODIUM PHOSPHATE BUFFER WITH REMARK 210 100MM NACL; 2MM UBL DOMAIN REMARK 210 15N; 50MM SODIUM PHOSPHATE REMARK 210 BUFFER WITH 100MM NACL; 2MM REMARK 210 UBL DOMAIN NON-LABELED; 50MM REMARK 210 SODIUM PHOSPHATE BUFFER WITH REMARK 210 100MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : CBCACONH, HNCACB, CCC-TOC- REMARK 210 NNH, HCC-TOC-NNH, HNCO, 3D_15N REMARK 210 -SEPARATED_TOCSY, INTENSITY- REMARK 210 MODULATED 15N HSQC, 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 1.0.6 REMARK 210 METHOD USED : CYANA-AUTOMATED NOE REMARK 210 ASSIGNMENT, TORSION ANGLE REMARK 210 DYNAMICS; AMBER-SIMULATED REMARK 210 ANNEALING, CYANA OUTPUT IS THE REMARK 210 INITIAL STRUCTURE REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 14 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: DISTANCE RESTRAINTS FROM 2D D2O-NOESY, 3D 15N-NOESY- REMARK 210 HSQC, ANGLE RESTAINTS FROM INTENSITY-MODULATED 15N HSQC AND REMARK 210 TALOS CHEMICAL SHIFT ANALYSIS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 11 1.99 -62.77 REMARK 500 1 TYR A 51 78.88 -102.49 REMARK 500 1 LYS A 79 -43.14 112.67 REMARK 500 2 SER A 2 39.58 -142.99 REMARK 500 2 ALA A 52 23.72 49.96 REMARK 500 4 HIS A 3 163.21 60.26 REMARK 500 4 LYS A 79 -34.33 -149.06 REMARK 500 4 LYS A 81 -43.65 58.67 REMARK 500 5 LEU A 11 0.97 -59.46 REMARK 500 5 ALA A 52 25.37 49.51 REMARK 500 5 LYS A 79 112.99 -12.14 REMARK 500 6 ALA A 52 15.27 56.17 REMARK 500 7 LYS A 79 -47.17 -131.85 REMARK 500 8 SER A 2 2.63 -150.33 REMARK 500 8 LEU A 11 1.94 -66.81 REMARK 500 8 VAL A 83 -11.26 -140.13 REMARK 500 9 ALA A 52 26.22 49.40 REMARK 500 9 VAL A 83 -1.94 -140.12 REMARK 500 10 LEU A 11 7.30 -63.37 REMARK 500 10 ALA A 82 99.93 -68.41 REMARK 500 10 VAL A 83 -33.19 -140.59 REMARK 500 11 SER A 2 -23.77 -158.61 REMARK 500 11 HIS A 3 146.95 58.55 REMARK 500 11 ALA A 82 99.69 -69.13 REMARK 500 12 ALA A 41 -36.84 -131.69 REMARK 500 12 LYS A 79 -44.32 -145.14 REMARK 500 13 TYR A 51 -61.20 -99.72 REMARK 500 13 ALA A 52 25.24 -140.93 REMARK 500 14 ALA A 52 12.49 55.92 REMARK 500 REMARK 500 REMARK: NULL DBREF 1P1A A 4 85 UNP P54727 RD23B_HUMAN 1 82 SEQADV 1P1A GLY A 1 UNP P54727 CLONING ARTIFACT SEQADV 1P1A SER A 2 UNP P54727 CLONING ARTIFACT SEQADV 1P1A HIS A 3 UNP P54727 CLONING ARTIFACT SEQRES 1 A 85 GLY SER HIS MET GLN VAL THR LEU LYS THR LEU GLN GLN SEQRES 2 A 85 GLN THR PHE LYS ILE ASP ILE ASP PRO GLU GLU THR VAL SEQRES 3 A 85 LYS ALA LEU LYS GLU LYS ILE GLU SER GLU LYS GLY LYS SEQRES 4 A 85 ASP ALA PHE PRO VAL ALA GLY GLN LYS LEU ILE TYR ALA SEQRES 5 A 85 GLY LYS ILE LEU ASN ASP ASP THR ALA LEU LYS GLU TYR SEQRES 6 A 85 LYS ILE ASP GLU LYS ASN PHE VAL VAL VAL MET VAL THR SEQRES 7 A 85 LYS PRO LYS ALA VAL SER THR HELIX 1 1 THR A 25 GLY A 38 1 14 HELIX 2 2 PRO A 43 ALA A 45 5 3 HELIX 3 3 ALA A 61 LYS A 66 5 6 SHEET 1 A 5 THR A 15 ILE A 20 0 SHEET 2 A 5 MET A 4 THR A 10 -1 N MET A 4 O ILE A 20 SHEET 3 A 5 PHE A 72 VAL A 77 1 O VAL A 73 N LYS A 9 SHEET 4 A 5 GLN A 47 TYR A 51 -1 N ILE A 50 O VAL A 74 SHEET 5 A 5 LYS A 54 ILE A 55 -1 O LYS A 54 N TYR A 51 CISPEP 1 LYS A 79 PRO A 80 1 -11.20 CISPEP 2 THR A 78 LYS A 79 4 -12.04 CISPEP 3 LYS A 79 PRO A 80 4 -6.56 CISPEP 4 SER A 84 THR A 85 13 -6.21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000