PDB Short entry for 1P49 HEADER HYDROLASE 21-APR-03 1P49 TITLE STRUCTURE OF HUMAN PLACENTAL ESTRONE/DHEA SULFATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: STERYL-SULFATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: STEROID SULFATASE, STERYL-SULFATE SULFOHYDROLASE, COMPND 5 ARYLSULFATASE C, ASC; COMPND 6 EC: 3.1.6.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: PLACENTA KEYWDS STEROID BIOSYNTHESIS, STEROID SULFATASE, ESTRONE SULFATE, KEYWDS 2 DEHYDROEPIANDROSTERONE SULFATE, HUMAN PLACENTAL ENZYME, ENDOPLASMIC KEYWDS 3 RETICULUM MEMBRANE-BOUND, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.G.HERNANDEZ-GUZMAN,T.HIGASHIYAMA,W.PANGBORN,Y.OSAWA,D.GHOSH REVDAT 5 29-JUL-20 1P49 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 02-DEC-15 1P49 1 FORMUL HET HETNAM HETSYN REVDAT 4 2 1 REMARK REVDAT 3 13-JUL-11 1P49 1 VERSN REVDAT 2 24-FEB-09 1P49 1 VERSN REVDAT 1 12-AUG-03 1P49 0 JRNL AUTH F.G.HERNANDEZ-GUZMAN,T.HIGASHIYAMA,W.PANGBORN,Y.OSAWA, JRNL AUTH 2 D.GHOSH JRNL TITL STRUCTURE OF HUMAN ESTRONE SULFATASE SUGGESTS FUNCTIONAL JRNL TITL 2 ROLES OF MEMBRANE ASSOCIATION JRNL REF J.BIOL.CHEM. V. 278 22989 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12657638 JRNL DOI 10.1074/JBC.M211497200 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 24533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1183 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4337 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.354 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P49 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000018987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.948 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24534 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.23900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45-50% MPD, 0.10M AMMONIUM PHOSPHATE, REMARK 280 PH 8.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 62970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 58.49000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -101.30765 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 116.98000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 P PO4 A 606 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 22 REMARK 465 GLY A 477 REMARK 465 SER A 478 REMARK 465 ASN A 479 REMARK 465 GLY A 480 REMARK 465 LYS A 576 REMARK 465 GLN A 577 REMARK 465 ASP A 578 REMARK 465 LYS A 579 REMARK 465 ARG A 580 REMARK 465 LEU A 581 REMARK 465 SER A 582 REMARK 465 ARG A 583 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 314 O HOH A 824 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 P PO4 A 606 O2 PO4 A 606 5556 1.43 REMARK 500 P PO4 A 606 O1 PO4 A 606 5556 1.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 24 19.79 59.09 REMARK 500 ARG A 26 40.72 72.65 REMARK 500 CYS A 44 21.80 -59.54 REMARK 500 THR A 52 54.76 -108.46 REMARK 500 ARG A 57 47.17 -79.30 REMARK 500 LEU A 58 -20.46 -162.86 REMARK 500 MET A 93 57.75 -111.09 REMARK 500 ALA A 106 46.16 -93.51 REMARK 500 TRP A 135 -73.47 -104.39 REMARK 500 MET A 139 -73.96 -138.34 REMARK 500 LEU A 164 -113.01 -95.36 REMARK 500 SER A 176 23.28 -60.87 REMARK 500 VAL A 186 -57.03 -127.87 REMARK 500 LEU A 209 132.84 -175.95 REMARK 500 ASN A 247 -124.24 64.05 REMARK 500 ASP A 258 92.50 -67.65 REMARK 500 ASN A 275 34.05 -141.35 REMARK 500 VAL A 289 50.54 -113.92 REMARK 500 THR A 291 136.31 -33.02 REMARK 500 ALA A 292 52.82 99.33 REMARK 500 LYS A 302 96.57 -54.81 REMARK 500 GLN A 304 -83.30 -90.96 REMARK 500 HIS A 305 46.66 -95.37 REMARK 500 SER A 351 -168.30 -63.77 REMARK 500 GLU A 355 119.98 -27.04 REMARK 500 ILE A 363 -29.03 -33.03 REMARK 500 ALA A 369 3.65 114.75 REMARK 500 GLU A 373 -47.11 -23.37 REMARK 500 ARG A 377 178.17 -59.68 REMARK 500 VAL A 378 155.86 165.37 REMARK 500 ASP A 438 48.14 -80.74 REMARK 500 ASN A 447 -125.13 70.58 REMARK 500 LEU A 450 92.82 -67.84 REMARK 500 ASN A 451 -102.14 -71.29 REMARK 500 ASN A 459 40.17 -93.72 REMARK 500 PHE A 469 -178.25 -172.22 REMARK 500 PRO A 471 -144.46 -62.50 REMARK 500 ASN A 472 70.31 -167.26 REMARK 500 PHE A 473 122.29 -35.57 REMARK 500 ASN A 474 -85.43 -56.71 REMARK 500 ALA A 483 -70.30 -63.18 REMARK 500 HIS A 485 -21.29 77.26 REMARK 500 PHE A 488 -158.06 -114.97 REMARK 500 PHE A 490 -97.26 -53.29 REMARK 500 SER A 492 0.41 -56.24 REMARK 500 TYR A 493 11.41 -145.22 REMARK 500 ASP A 504 60.79 -153.41 REMARK 500 ILE A 505 -26.29 -39.38 REMARK 500 ARG A 510 -13.98 -48.95 REMARK 500 ASN A 513 108.53 -167.68 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 338 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 2-AMINO-3-OXO-4-SULFO-BUTYRIC ACID, ALS75, IS A REMARK 600 POST-TRANSLATIONALLY MODIFIED CYS75. ALS IS REMARK 600 REFERRED TO AS HYDROXYFORMYLGLYCINE (FGS75) IN REMARK 600 THE RELATED PUBLICATION. REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PO4 A 606 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 605 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 35 OD1 REMARK 620 2 ASP A 36 OD1 106.3 REMARK 620 3 ASP A 36 OD2 73.6 45.9 REMARK 620 4 ALS A 75 S 114.9 111.3 97.6 REMARK 620 5 ALS A 75 OS1 108.7 136.3 123.5 28.2 REMARK 620 6 ALS A 75 OS3 106.5 90.3 69.9 27.7 55.1 REMARK 620 7 ASP A 342 OD1 78.4 91.9 115.5 146.8 120.2 173.8 REMARK 620 8 ASP A 342 OD2 83.1 133.0 152.7 105.2 77.1 132.0 43.9 REMARK 620 9 GLN A 343 OE1 152.8 68.1 112.0 91.2 90.7 100.2 75.3 82.8 REMARK 620 N 1 2 3 4 5 6 7 8 DBREF 1P49 A 22 583 UNP P08842 STS_HUMAN 22 583 SEQADV 1P49 ALS A 75 UNP P08842 CYS 75 MODIFIED RESIDUE SEQRES 1 A 562 HIS ALA ALA SER ARG PRO ASN ILE ILE LEU VAL MET ALA SEQRES 2 A 562 ASP ASP LEU GLY ILE GLY ASP PRO GLY CYS TYR GLY ASN SEQRES 3 A 562 LYS THR ILE ARG THR PRO ASN ILE ASP ARG LEU ALA SER SEQRES 4 A 562 GLY GLY VAL LYS LEU THR GLN HIS LEU ALA ALA SER PRO SEQRES 5 A 562 LEU ALS THR PRO SER ARG ALA ALA PHE MET THR GLY ARG SEQRES 6 A 562 TYR PRO VAL ARG SER GLY MET ALA SER TRP SER ARG THR SEQRES 7 A 562 GLY VAL PHE LEU PHE THR ALA SER SER GLY GLY LEU PRO SEQRES 8 A 562 THR ASP GLU ILE THR PHE ALA LYS LEU LEU LYS ASP GLN SEQRES 9 A 562 GLY TYR SER THR ALA LEU ILE GLY LYS TRP HIS LEU GLY SEQRES 10 A 562 MET SER CYS HIS SER LYS THR ASP PHE CYS HIS HIS PRO SEQRES 11 A 562 LEU HIS HIS GLY PHE ASN TYR PHE TYR GLY ILE SER LEU SEQRES 12 A 562 THR ASN LEU ARG ASP CYS LYS PRO GLY GLU GLY SER VAL SEQRES 13 A 562 PHE THR THR GLY PHE LYS ARG LEU VAL PHE LEU PRO LEU SEQRES 14 A 562 GLN ILE VAL GLY VAL THR LEU LEU THR LEU ALA ALA LEU SEQRES 15 A 562 ASN CYS LEU GLY LEU LEU HIS VAL PRO LEU GLY VAL PHE SEQRES 16 A 562 PHE SER LEU LEU PHE LEU ALA ALA LEU ILE LEU THR LEU SEQRES 17 A 562 PHE LEU GLY PHE LEU HIS TYR PHE ARG PRO LEU ASN CYS SEQRES 18 A 562 PHE MET MET ARG ASN TYR GLU ILE ILE GLN GLN PRO MET SEQRES 19 A 562 SER TYR ASP ASN LEU THR GLN ARG LEU THR VAL GLU ALA SEQRES 20 A 562 ALA GLN PHE ILE GLN ARG ASN THR GLU THR PRO PHE LEU SEQRES 21 A 562 LEU VAL LEU SER TYR LEU HIS VAL HIS THR ALA LEU PHE SEQRES 22 A 562 SER SER LYS ASP PHE ALA GLY LYS SER GLN HIS GLY VAL SEQRES 23 A 562 TYR GLY ASP ALA VAL GLU GLU MET ASP TRP SER VAL GLY SEQRES 24 A 562 GLN ILE LEU ASN LEU LEU ASP GLU LEU ARG LEU ALA ASN SEQRES 25 A 562 ASP THR LEU ILE TYR PHE THR SER ASP GLN GLY ALA HIS SEQRES 26 A 562 VAL GLU GLU VAL SER SER LYS GLY GLU ILE HIS GLY GLY SEQRES 27 A 562 SER ASN GLY ILE TYR LYS GLY GLY LYS ALA ASN ASN TRP SEQRES 28 A 562 GLU GLY GLY ILE ARG VAL PRO GLY ILE LEU ARG TRP PRO SEQRES 29 A 562 ARG VAL ILE GLN ALA GLY GLN LYS ILE ASP GLU PRO THR SEQRES 30 A 562 SER ASN MET ASP ILE PHE PRO THR VAL ALA LYS LEU ALA SEQRES 31 A 562 GLY ALA PRO LEU PRO GLU ASP ARG ILE ILE ASP GLY ARG SEQRES 32 A 562 ASP LEU MET PRO LEU LEU GLU GLY LYS SER GLN ARG SER SEQRES 33 A 562 ASP HIS GLU PHE LEU PHE HIS TYR CYS ASN ALA TYR LEU SEQRES 34 A 562 ASN ALA VAL ARG TRP HIS PRO GLN ASN SER THR SER ILE SEQRES 35 A 562 TRP LYS ALA PHE PHE PHE THR PRO ASN PHE ASN PRO VAL SEQRES 36 A 562 GLY SER ASN GLY CYS PHE ALA THR HIS VAL CYS PHE CYS SEQRES 37 A 562 PHE GLY SER TYR VAL THR HIS HIS ASP PRO PRO LEU LEU SEQRES 38 A 562 PHE ASP ILE SER LYS ASP PRO ARG GLU ARG ASN PRO LEU SEQRES 39 A 562 THR PRO ALA SER GLU PRO ARG PHE TYR GLU ILE LEU LYS SEQRES 40 A 562 VAL MET GLN GLU ALA ALA ASP ARG HIS THR GLN THR LEU SEQRES 41 A 562 PRO GLU VAL PRO ASP GLN PHE SER TRP ASN ASN PHE LEU SEQRES 42 A 562 TRP LYS PRO TRP LEU GLN LEU CYS CYS PRO SER THR GLY SEQRES 43 A 562 LEU SER CYS GLN CYS ASP ARG GLU LYS GLN ASP LYS ARG SEQRES 44 A 562 LEU SER ARG MODRES 1P49 ASN A 47 ASN GLYCOSYLATION SITE MODRES 1P49 ASN A 259 ASN GLYCOSYLATION SITE MODRES 1P49 ALS A 75 ALA (3S)-3-(SULFOOXY)-L-SERINE HET ALS A 75 11 HET BOG A 601 20 HET BOG A 602 20 HET NAG A 603 14 HET NAG A 604 14 HET CA A 605 1 HET PO4 A 606 3 HETNAM ALS (3S)-3-(SULFOOXY)-L-SERINE HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 1 ALS C3 H7 N O7 S FORMUL 2 BOG 2(C14 H28 O6) FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 6 CA CA 2+ FORMUL 7 PO4 O4 P 3- FORMUL 8 HOH *130(H2 O) HELIX 1 1 PRO A 42 GLY A 46 5 5 HELIX 2 2 THR A 52 ARG A 57 1 6 HELIX 3 3 THR A 76 GLY A 85 1 10 HELIX 4 4 TYR A 87 GLY A 92 5 6 HELIX 5 5 THR A 117 GLN A 125 1 9 HELIX 6 6 HIS A 150 HIS A 154 5 5 HELIX 7 7 LEU A 167 LYS A 171 5 5 HELIX 8 8 PHE A 178 VAL A 186 1 9 HELIX 9 9 VAL A 186 LEU A 206 1 21 HELIX 10 10 PRO A 212 CYS A 242 1 31 HELIX 11 11 ASN A 259 ARG A 274 1 16 HELIX 12 12 GLY A 306 LEU A 329 1 24 HELIX 13 13 LEU A 331 ASN A 333 5 3 HELIX 14 14 TRP A 372 ARG A 377 1 6 HELIX 15 15 ASP A 402 GLY A 412 1 11 HELIX 16 16 LEU A 426 GLU A 431 1 6 HELIX 17 17 ARG A 522 THR A 538 1 17 HELIX 18 18 SER A 549 LEU A 554 1 6 HELIX 19 19 LYS A 556 GLN A 560 5 5 SHEET 1 A11 LYS A 393 ILE A 394 0 SHEET 2 A11 VAL A 63 LEU A 65 1 N LYS A 64 O ILE A 394 SHEET 3 A11 GLY A 380 ARG A 383 -1 O GLY A 380 N LEU A 65 SHEET 4 A11 THR A 335 SER A 341 -1 N ILE A 337 O ARG A 383 SHEET 5 A11 ASN A 28 ALA A 34 1 N ASN A 28 O LEU A 336 SHEET 6 A11 PHE A 280 SER A 285 1 O LEU A 282 N LEU A 31 SHEET 7 A11 SER A 128 LYS A 134 1 N ILE A 132 O SER A 285 SHEET 8 A11 TYR A 158 ILE A 162 1 O TYR A 160 N GLY A 133 SHEET 9 A11 MET A 244 ARG A 246 -1 O MET A 245 N GLY A 161 SHEET 10 A11 GLU A 249 GLN A 253 -1 O ILE A 251 N MET A 244 SHEET 11 A11 CYS A 572 ASP A 573 -1 O CYS A 572 N GLN A 253 SHEET 1 B 2 HIS A 68 LEU A 69 0 SHEET 2 B 2 THR A 398 SER A 399 1 O THR A 398 N LEU A 69 SHEET 1 C 4 PHE A 441 CYS A 446 0 SHEET 2 C 4 TYR A 449 TRP A 455 -1 O TYR A 449 N CYS A 446 SHEET 3 C 4 TRP A 464 PHE A 467 -1 O TRP A 464 N TRP A 455 SHEET 4 C 4 LEU A 501 PHE A 503 -1 O PHE A 503 N LYS A 465 SSBOND 1 CYS A 141 CYS A 148 1555 1555 2.02 SSBOND 2 CYS A 170 CYS A 242 1555 1555 2.04 SSBOND 3 CYS A 446 CYS A 489 1555 1555 2.03 SSBOND 4 CYS A 481 CYS A 487 1555 1555 2.03 SSBOND 5 CYS A 562 CYS A 570 1555 1555 2.03 SSBOND 6 CYS A 563 CYS A 572 1555 1555 2.03 LINK ND2 ASN A 47 C1 NAG A 603 1555 1555 1.45 LINK C LEU A 74 N ALS A 75 1555 1555 1.33 LINK C ALS A 75 N THR A 76 1555 1555 1.33 LINK ND2 ASN A 259 C1 NAG A 604 1555 1555 1.45 LINK OD1 ASP A 35 CA CA A 605 1555 1555 2.32 LINK OD1 ASP A 36 CA CA A 605 1555 1555 2.82 LINK OD2 ASP A 36 CA CA A 605 1555 1555 2.78 LINK S ALS A 75 CA CA A 605 1555 1555 3.15 LINK OS1 ALS A 75 CA CA A 605 1555 1555 2.69 LINK OS3 ALS A 75 CA CA A 605 1555 1555 2.59 LINK OD1 ASP A 342 CA CA A 605 1555 1555 3.09 LINK OD2 ASP A 342 CA CA A 605 1555 1555 2.77 LINK OE1 GLN A 343 CA CA A 605 1555 1555 2.19 CISPEP 1 GLN A 253 PRO A 254 0 -0.05 CISPEP 2 HIS A 288 VAL A 289 0 -1.30 CISPEP 3 ASP A 498 PRO A 499 0 -0.86 CRYST1 116.980 116.980 102.660 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008548 0.004935 0.000000 0.00000 SCALE2 0.000000 0.009871 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009741 0.00000