PDB Short entry for 1P98 HEADER REPLICATION 09-MAY-03 1P98 TITLE HIGH-RESOLUTION NMR STRUCTURE OF THE UBL-DOMAIN OF HHR23A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBIQUITIN-LIKE DOMAIN; COMPND 5 SYNONYM: HHR23A; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAD23A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UBIQUITIN-LIKE DOMAIN, REPLICATION EXPDTA SOLUTION NMR NUMMDL 11 AUTHOR T.D.MUELLER,J.FEIGON REVDAT 3 23-FEB-22 1P98 1 REMARK REVDAT 2 24-FEB-09 1P98 1 VERSN REVDAT 1 07-OCT-03 1P98 0 JRNL AUTH T.D.MUELLER,J.FEIGON JRNL TITL STRUCTURAL DETERMINANTS FOR THE BINDING OF UBIQUITIN-LIKE JRNL TITL 2 DOMAINS TO THE PROTEASOME. JRNL REF EMBO J. V. 22 4634 2003 JRNL REFN ISSN 0261-4189 JRNL PMID 12970176 JRNL DOI 10.1093/EMBOJ/CDG467 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.D.MUELLER,J.FEIGON REMARK 1 TITL SOLUTION STRUCTURES OF UBA DOMAINS REVEAL A CONSERVED REMARK 1 TITL 2 HYDROPHOBIC SURFACE FOR PROTEIN-PROTEIN INTERACTIONS REMARK 1 REF J.MOL.BIOL. V. 319 1243 2002 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1016/S0022-2836(02)00302-9 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AURELIA 2.8.9, X-PLOR 3.1 REMARK 3 AUTHORS : NEIDIG, P. (AURELIA), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P98 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019166. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 150MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM UBIQUITIN-LIKE DOMAIN OF REMARK 210 HHR23A U-15N,13C; 2MM UBIQUITIN- REMARK 210 LIKE DOMAIN OF HHR23A, UNLABELED REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.5, X-PLOR 3.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 120 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 11 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 9 -127.57 -62.08 REMARK 500 1 LEU A 10 36.25 -91.36 REMARK 500 1 GLN A 11 -22.19 91.14 REMARK 500 1 ARG A 18 -76.09 -24.47 REMARK 500 1 MET A 19 -157.00 38.28 REMARK 500 1 VAL A 25 -32.96 78.50 REMARK 500 1 LYS A 36 -65.35 -100.54 REMARK 500 1 VAL A 43 -32.74 -38.74 REMARK 500 2 ALA A 2 -160.93 80.72 REMARK 500 2 VAL A 3 -159.42 -131.40 REMARK 500 2 LEU A 10 -29.72 86.31 REMARK 500 2 GLN A 12 -18.28 124.10 REMARK 500 2 PHE A 15 -163.34 -126.76 REMARK 500 2 ARG A 18 -82.34 -62.06 REMARK 500 2 MET A 19 -165.72 44.96 REMARK 500 2 VAL A 25 -27.04 77.65 REMARK 500 2 LYS A 36 -67.09 -97.45 REMARK 500 2 ARG A 65 56.50 34.70 REMARK 500 2 ASN A 70 -155.29 -110.62 REMARK 500 2 PHE A 71 139.17 -171.51 REMARK 500 3 VAL A 3 -161.67 -72.82 REMARK 500 3 LEU A 10 -30.67 76.85 REMARK 500 3 GLN A 11 -51.66 161.49 REMARK 500 3 ARG A 18 69.50 -101.18 REMARK 500 3 VAL A 25 -25.92 76.06 REMARK 500 3 LYS A 36 -64.79 -96.89 REMARK 500 3 ALA A 44 -74.35 -51.70 REMARK 500 3 ARG A 65 41.92 37.32 REMARK 500 4 ALA A 2 174.16 58.84 REMARK 500 4 THR A 9 -127.44 -62.18 REMARK 500 4 LEU A 10 35.73 -90.17 REMARK 500 4 GLN A 11 -18.77 88.53 REMARK 500 4 PHE A 15 -158.39 -158.43 REMARK 500 4 ARG A 18 -78.82 -28.30 REMARK 500 4 MET A 19 -160.56 41.16 REMARK 500 4 VAL A 25 -29.59 77.30 REMARK 500 4 LYS A 36 -65.08 -96.97 REMARK 500 4 VAL A 43 -33.27 -38.18 REMARK 500 4 THR A 77 128.17 70.02 REMARK 500 5 VAL A 3 -159.79 -82.05 REMARK 500 5 LEU A 10 -40.52 78.25 REMARK 500 5 GLN A 11 -47.90 168.49 REMARK 500 5 ARG A 18 69.06 -100.12 REMARK 500 5 VAL A 25 -27.74 76.96 REMARK 500 5 LYS A 36 -65.73 -96.89 REMARK 500 5 ARG A 65 46.23 38.10 REMARK 500 5 ASN A 70 -153.88 -108.21 REMARK 500 5 PHE A 71 141.35 -174.71 REMARK 500 6 ALA A 2 174.64 58.71 REMARK 500 6 LEU A 10 -32.35 86.88 REMARK 500 REMARK 500 THIS ENTRY HAS 96 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DV0 RELATED DB: PDB REMARK 900 C-TERMINAL UBA DOMAIN OF HHR23A REMARK 900 RELATED ID: 1IFY RELATED DB: PDB REMARK 900 N-TERMINAL UBA DOMAIN OF HHR23A REMARK 900 RELATED ID: 1F4I RELATED DB: PDB REMARK 900 MUTANT OF C-TERMINAL UBA DOMAIN OF HHR23A REMARK 900 RELATED ID: 1P9C RELATED DB: PDB REMARK 900 STRUCTURE OF THE C-TERMINAL UBIQUITIN-INTERACTING MOTIF OF THE REMARK 900 PROEASOME SUBUNIT S5A IN ITS UNBOUND CONFORMATION REMARK 900 RELATED ID: 1P9D RELATED DB: PDB REMARK 900 HIGH-RESOLUTION STRUCTURE OF THE COMPLEX OF HHR23A UBIQUITIN-LIKE REMARK 900 DOMAIN AND THE C-TERMINAL UBIQUITIN-INTERACTING MOTIF OF PROTEASOME REMARK 900 SUBUNIT S5A DBREF 1P98 A 1 78 UNP P54725 RD23A_HUMAN 1 78 SEQRES 1 A 78 MET ALA VAL THR ILE THR LEU LYS THR LEU GLN GLN GLN SEQRES 2 A 78 THR PHE LYS ILE ARG MET GLU PRO ASP GLU THR VAL LYS SEQRES 3 A 78 VAL LEU LYS GLU LYS ILE GLU ALA GLU LYS GLY ARG ASP SEQRES 4 A 78 ALA PHE PRO VAL ALA GLY GLN LYS LEU ILE TYR ALA GLY SEQRES 5 A 78 LYS ILE LEU SER ASP ASP VAL PRO ILE ARG ASP TYR ARG SEQRES 6 A 78 ILE ASP GLU LYS ASN PHE VAL VAL VAL MET VAL THR LYS HELIX 1 1 VAL A 25 LYS A 36 1 12 HELIX 2 2 ILE A 61 ARG A 65 5 5 SHEET 1 A 5 THR A 14 ILE A 17 0 SHEET 2 A 5 ILE A 5 LYS A 8 -1 N LEU A 7 O PHE A 15 SHEET 3 A 5 VAL A 72 MET A 75 1 O VAL A 72 N LYS A 8 SHEET 4 A 5 LYS A 47 TYR A 50 -1 N ILE A 49 O VAL A 73 SHEET 5 A 5 LYS A 53 LEU A 55 -1 O LEU A 55 N LEU A 48 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000