PDB Short entry for 1P9D
HEADER    REPLICATION                             10-MAY-03   1P9D              
TITLE     HIGH-RESOLUTION STRUCTURE OF THE COMPLEX OF HHR23A UBIQUITIN-LIKE     
TITLE    2 DOMAIN AND THE C-TERMINAL UBIQUITIN-INTERACTING MOTIF OF PROTEASOME  
TITLE    3 SUBUNIT S5A                                                          
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4;            
COMPND   3 CHAIN: S;                                                            
COMPND   4 FRAGMENT: C-TERMINAL UBIQUITIN-INTERACTING MOTIF, PUBS2;             
COMPND   5 SYNONYM: 26S PROTEASOME REGULATORY SUBUNIT S5A, RPN10, MULTIUBIQUITIN
COMPND   6 CHAIN BINDING PROTEIN, ANTISECRETORY FACTOR-1, AF, ASF;              
COMPND   7 ENGINEERED: YES;                                                     
COMPND   8 MOL_ID: 2;                                                           
COMPND   9 MOLECULE: UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A;                
COMPND  10 CHAIN: U;                                                            
COMPND  11 FRAGMENT: UBIQUITIN-LIKE DOMAIN;                                     
COMPND  12 SYNONYM: HHR23A;                                                     
COMPND  13 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: PSMD4 OR MCB1;                                                 
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 MOL_ID: 2;                                                           
SOURCE   9 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE  10 ORGANISM_COMMON: HUMAN;                                              
SOURCE  11 ORGANISM_TAXID: 9606;                                                
SOURCE  12 GENE: RAD23A;                                                        
SOURCE  13 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE  14 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    PROTEIN-PEPTIDE COMPLEX, REPLICATION                                  
EXPDTA    SOLUTION NMR                                                          
NUMMDL    10                                                                    
AUTHOR    T.D.MUELLER,J.FEIGON                                                  
REVDAT   3   23-FEB-22 1P9D    1       REMARK                                   
REVDAT   2   24-FEB-09 1P9D    1       VERSN                                    
REVDAT   1   07-OCT-03 1P9D    0                                                
JRNL        AUTH   T.D.MUELLER,J.FEIGON                                         
JRNL        TITL   STRUCTURAL DETERMINANTS FOR THE BINDING OF UBIQUITIN-LIKE    
JRNL        TITL 2 DOMAINS TO THE PROTEASOME.                                   
JRNL        REF    EMBO J.                       V.  22  4634 2003              
JRNL        REFN                   ISSN 0261-4189                               
JRNL        PMID   12970176                                                     
JRNL        DOI    10.1093/EMBOJ/CDG467                                         
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : XWINNMR 2.5, X-PLOR 3.1                              
REMARK   3   AUTHORS     : BRUKER KARLSRUHE (XWINNMR), BRUNGER (X-PLOR)         
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS:                                           
REMARK   3  THE STRUCTURES ARE BASED ON A TOTAL OF 2066 RESTRAINTS, 1999 ARE    
REMARK   3  NOE-DERIVED DISTANCE RESTRAINTS, OF WHICH 58 ARE INTERMOLECULAR.    
REMARK   3  FOR THE S5A UBIQUITIN-INTERACTING MOTIF ONLY THE RESIDUES 270 TO    
REMARK   3  301 WERE INCLUDED IN THE STRUCTURE CALCULATIONS DUE TO DISORDER OF  
REMARK   3  THE FLEXIBLE N- AND C-TERMINI.                                      
REMARK   4                                                                      
REMARK   4 1P9D COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-03.                  
REMARK 100 THE DEPOSITION ID IS D_1000019171.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 300                                
REMARK 210  PH                             : 6.5                                
REMARK 210  IONIC STRENGTH                 : 150MM                              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 2MM S5A PEPTIDE UNLABELED, 2MM     
REMARK 210                                   UBIQUITIN-LIKE DOMAIN OF HHR23A    
REMARK 210                                   U-15N,13C; 2MM S5A PEPTIDE U-15N,  
REMARK 210                                   13C, 2MM UBIQUITIN-LIKE DOMAIN     
REMARK 210                                   OF HHR23A UNLABELED                
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_13C-SEPARATED_NOESY; 15N-,13C   
REMARK 210                                   -FILTERED/EDITED 2D-NOESY          
REMARK 210  SPECTROMETER FIELD STRENGTH    : 500 MHZ; 600 MHZ                   
REMARK 210  SPECTROMETER MODEL             : DRX                                
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : AURELIA 2.8.9, X-PLOR 3.1          
REMARK 210   METHOD USED                   : SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 30                                 
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 10                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR      
REMARK 210  SPECTROSCOPY                                                        
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: S, U                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                   
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                            
REMARK 465   MODELS 1-10                                                        
REMARK 465     RES C SSSEQI                                                     
REMARK 465     MET S   263                                                      
REMARK 465     THR S   264                                                      
REMARK 465     ILE S   265                                                      
REMARK 465     SER S   266                                                      
REMARK 465     GLN S   267                                                      
REMARK 465     GLN S   268                                                      
REMARK 465     GLU S   269                                                      
REMARK 465     GLN S   302                                                      
REMARK 465     ALA S   303                                                      
REMARK 465     GLU S   304                                                      
REMARK 465     SER S   305                                                      
REMARK 465     ALA S   306                                                      
REMARK 465     ASP S   307                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 THR S 273       45.55    -84.98                                   
REMARK 500  1 PRO S 276      -77.48    -80.89                                   
REMARK 500  1 ASP S 277      -15.32     84.14                                   
REMARK 500  1 SER S 280       29.84     90.68                                   
REMARK 500  1 THR S 282      -70.82     14.02                                   
REMARK 500  1 LEU S 295       34.61    -87.28                                   
REMARK 500  1 GLN S 296      -31.69    -34.62                                   
REMARK 500  1 ALA S 298       35.41   -155.18                                   
REMARK 500  1 GLU S 299       36.78   -161.51                                   
REMARK 500  1 PHE S 300       64.21     38.07                                   
REMARK 500  1 LEU U  10      -46.37     -5.85                                   
REMARK 500  1 GLN U  11       -5.52    -54.98                                   
REMARK 500  1 GLN U  12       -4.29     96.12                                   
REMARK 500  1 ARG U  18       65.28   -109.61                                   
REMARK 500  1 GLU U  23      174.67    -49.46                                   
REMARK 500  1 VAL U  25       -6.34     58.17                                   
REMARK 500  1 PHE U  41       36.71   -150.21                                   
REMARK 500  1 VAL U  43      -37.75    -28.72                                   
REMARK 500  1 ASP U  57      -16.59    -47.78                                   
REMARK 500  1 ARG U  65       62.15     29.58                                   
REMARK 500  2 ASP S 277       86.52     22.36                                   
REMARK 500  2 SER S 279       35.34    104.78                                   
REMARK 500  2 SER S 280       10.91     88.99                                   
REMARK 500  2 THR S 282     -126.92     29.79                                   
REMARK 500  2 GLU S 283      -68.51    -29.47                                   
REMARK 500  2 PHE S 300      -76.52     77.75                                   
REMARK 500  2 THR U   9       48.22    -85.73                                   
REMARK 500  2 LEU U  10      -30.73     73.09                                   
REMARK 500  2 GLN U  12       -9.27     95.45                                   
REMARK 500  2 GLN U  13       99.75    -56.55                                   
REMARK 500  2 PHE U  15     -165.34   -104.25                                   
REMARK 500  2 ARG U  18       67.79   -110.17                                   
REMARK 500  2 GLU U  23     -176.68    -49.56                                   
REMARK 500  2 VAL U  25       -0.86     52.35                                   
REMARK 500  2 PHE U  41       42.47   -150.75                                   
REMARK 500  2 VAL U  43      -38.03    -28.82                                   
REMARK 500  2 ALA U  44      -73.60    -60.12                                   
REMARK 500  2 ARG U  65       57.15     32.76                                   
REMARK 500  3 PRO S 276      -95.73    -75.69                                   
REMARK 500  3 ASP S 277      -93.37   -125.66                                   
REMARK 500  3 LEU S 278      -26.31     82.98                                   
REMARK 500  3 SER S 279       47.87    -89.34                                   
REMARK 500  3 SER S 280      -28.47    163.02                                   
REMARK 500  3 MET S 281      -62.61     -5.49                                   
REMARK 500  3 THR S 282     -165.59     77.11                                   
REMARK 500  3 LEU S 295       37.50    -81.22                                   
REMARK 500  3 GLN S 296      -30.64    -34.82                                   
REMARK 500  3 ALA S 298      -63.06     87.60                                   
REMARK 500  3 GLU S 299      -92.90   -127.75                                   
REMARK 500  3 ILE U   5      171.34    -50.19                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     206 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1P98   RELATED DB: PDB                                   
REMARK 900 HIGH-RESOLUTION STRUCTURE OF THE UBIQUITIN-LIKE DOMAIN OF HHR23A     
REMARK 900 RELATED ID: 1P9C   RELATED DB: PDB                                   
REMARK 900 STRUCTURE OF THE C-TERMINAL UBIQUITIN-INTERACTING MOTIF OF THE       
REMARK 900 PROEASOME SUBUNIT S5A IN ITS UNBOUND CONFORMATION                    
DBREF  1P9D U    1    78  UNP    P54725   RD23A_HUMAN      1     78             
DBREF  1P9D S  263   307  UNP    P55036   PSD4_HUMAN     263    307             
SEQRES   1 S   45  MET THR ILE SER GLN GLN GLU PHE GLY ARG THR GLY LEU          
SEQRES   2 S   45  PRO ASP LEU SER SER MET THR GLU GLU GLU GLN ILE ALA          
SEQRES   3 S   45  TYR ALA MET GLN MET SER LEU GLN GLY ALA GLU PHE GLY          
SEQRES   4 S   45  GLN ALA GLU SER ALA ASP                                      
SEQRES   1 U   78  MET ALA VAL THR ILE THR LEU LYS THR LEU GLN GLN GLN          
SEQRES   2 U   78  THR PHE LYS ILE ARG MET GLU PRO ASP GLU THR VAL LYS          
SEQRES   3 U   78  VAL LEU LYS GLU LYS ILE GLU ALA GLU LYS GLY ARG ASP          
SEQRES   4 U   78  ALA PHE PRO VAL ALA GLY GLN LYS LEU ILE TYR ALA GLY          
SEQRES   5 U   78  LYS ILE LEU SER ASP ASP VAL PRO ILE ARG ASP TYR ARG          
SEQRES   6 U   78  ILE ASP GLU LYS ASN PHE VAL VAL VAL MET VAL THR LYS          
HELIX    1   1 PRO S  276  SER S  280  5                                   5    
HELIX    2   2 MET S  281  LEU S  295  1                                  15    
HELIX    3   3 VAL U   25  GLY U   37  1                                  13    
HELIX    4   4 PRO U   60  ARG U   65  5                                   6    
SHEET    1   A 5 GLN U  13  ILE U  17  0                                        
SHEET    2   A 5 ILE U   5  THR U   9 -1  N  THR U   9   O  GLN U  13           
SHEET    3   A 5 VAL U  72  MET U  75  1  O  VAL U  74   N  LYS U   8           
SHEET    4   A 5 LYS U  47  TYR U  50 -1  N  LYS U  47   O  MET U  75           
SHEET    5   A 5 LYS U  53  SER U  56 -1  O  LEU U  55   N  LEU U  48           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000