PDB Short entry for 1P9M HEADER SIGNALING PROTEIN/CYTOKINE 12-MAY-03 1P9M TITLE CRYSTAL STRUCTURE OF THE HEXAMERIC HUMAN IL-6/IL-6 ALPHA TITLE 2 RECEPTOR/GP130 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-6 RECEPTOR BETA CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAINS D1 - D3; COMPND 5 SYNONYM: IL-6R-BETA, INTERLEUKIN 6 SIGNAL TRANSDUCER, MEMBRANE COMPND 6 GLYCOPROTEIN 130, GP130, ONCOSTATIN M RECEPTOR, CDW130, CD130 COMPND 7 ANTIGEN; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: INTERLEUKIN-6; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: IL-6, B-CELL STIMULATORY FACTOR 2, BSF-2, INTERFERON BETA-2, COMPND 13 HYBRIDOMA GROWTH FACTOR; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: INTERLEUKIN-6 RECEPTOR ALPHA CHAIN; COMPND 17 CHAIN: C; COMPND 18 FRAGMENT: EXTRACELLULAR DOMAINS D2 - D3; COMPND 19 SYNONYM: IL-6R-ALPHA, IL-6R 1, CD126 ANTIGEN; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IL6ST; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PACGP67A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: IL6 OR IFNB2; SOURCE 16 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 17 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PACGP67A; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 ORGANISM_TAXID: 9606; SOURCE 25 GENE: IL6R; SOURCE 26 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 27 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 29 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 30 EXPRESSION_SYSTEM_PLASMID: PACGP67A KEYWDS IG DOMAIN, FOUR HELIX BUNDLE, CYTOKINE, INTERLEUKIN-6, GP130, KEYWDS 2 SIGNALING PROTEIN-CYTOKINE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.BOULANGER,D.C.CHOW,E.E.BREVNOVA,K.C.GARCIA REVDAT 5 16-AUG-23 1P9M 1 SEQADV REVDAT 4 13-JUL-11 1P9M 1 VERSN REVDAT 3 24-FEB-09 1P9M 1 VERSN REVDAT 2 08-JUL-03 1P9M 1 REMARK COMPND SEQRES REVDAT 1 01-JUL-03 1P9M 0 JRNL AUTH M.J.BOULANGER,D.C.CHOW,E.E.BREVNOVA,K.C.GARCIA JRNL TITL HEXAMERIC STRUCTURE AND ASSEMBLY OF THE INTERLEUKIN-6/IL-6 JRNL TITL 2 ALPHA-RECEPTOR/GP130 COMPLEX JRNL REF SCIENCE V. 300 2101 2003 JRNL REFN ISSN 0036-8075 JRNL PMID 12829785 JRNL DOI 10.1126/SCIENCE.1083901 REMARK 2 REMARK 2 RESOLUTION. 3.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 15767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.282 REMARK 3 FREE R VALUE : 0.334 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1237 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.88 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2396 REMARK 3 BIN R VALUE (WORKING SET) : 0.4030 REMARK 3 BIN FREE R VALUE : 0.4870 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 185 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.036 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5322 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 117.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.77000 REMARK 3 B22 (A**2) : 2.77000 REMARK 3 B33 (A**2) : -5.55000 REMARK 3 B12 (A**2) : 30.66000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM SIGMAA (A) : 0.94 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.65 REMARK 3 ESD FROM C-V SIGMAA (A) : 1.29 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.030 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : GROUP REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.12 REMARK 3 BSOL : 10.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : &_1_TOPOLOGY_INFILE_4 REMARK 3 TOPOLOGY FILE 5 : &_1_TOPOLOGY_INFILE_5 REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P9M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019180. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15861 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1ALU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, SODIUM ACETATE, PH REMARK 280 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 139.90000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 80.77130 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 32.23333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 139.90000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 80.77130 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 32.23333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 139.90000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 80.77130 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 32.23333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 139.90000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 80.77130 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.23333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 139.90000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 80.77130 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 32.23333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 139.90000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 80.77130 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 32.23333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 161.54261 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 64.46667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 161.54261 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 64.46667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 161.54261 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 64.46667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 161.54261 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 64.46667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 161.54261 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 64.46667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 161.54261 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 64.46667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 13030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 65930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -279.80000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 161.54261 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 64.46667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 ALA B -1 REMARK 465 PRO B 0 REMARK 465 PRO B 1 REMARK 465 VAL B 2 REMARK 465 PRO B 3 REMARK 465 PRO B 4 REMARK 465 GLY B 5 REMARK 465 GLU B 6 REMARK 465 ASP B 7 REMARK 465 SER B 8 REMARK 465 LYS B 9 REMARK 465 ASP B 10 REMARK 465 VAL B 11 REMARK 465 ALA B 12 REMARK 465 ALA B 13 REMARK 465 PRO B 14 REMARK 465 HIS B 15 REMARK 465 ARG B 16 REMARK 465 GLN B 17 REMARK 465 PRO B 18 REMARK 465 SER B 47 REMARK 465 ASN B 48 REMARK 465 MET B 49 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ASN C 136 REMARK 475 SER C 137 REMARK 475 PRO C 138 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR A 8 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 GLN A 17 CG CD OE1 NE2 REMARK 480 LYS A 29 CG CD CE NZ REMARK 480 TYR A 35 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 HIS A 49 CG ND1 CD2 CE1 NE2 REMARK 480 ARG A 62 CG CD NE CZ NH1 NH2 REMARK 480 ILE A 77 CG1 CG2 CD1 REMARK 480 GLU A 90 CG CD OE1 OE2 REMARK 480 GLN A 91 CG CD OE1 NE2 REMARK 480 LYS A 108 CG CD CE NZ REMARK 480 HIS A 145 CG ND1 CD2 CE1 NE2 REMARK 480 LYS A 146 CG CD CE NZ REMARK 480 LYS A 153 CG CD CE NZ REMARK 480 ARG A 154 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 179 CG CD OE1 OE2 REMARK 480 LYS A 184 CG CD CE NZ REMARK 480 LYS A 199 CG CD CE NZ REMARK 480 GLU A 212 CG CD OE1 OE2 REMARK 480 GLU A 272 CG CD OE1 OE2 REMARK 480 LYS A 285 CG CD CE NZ REMARK 480 ARG B 40 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 46 CG CD CE NZ REMARK 480 LYS B 54 CG CD CE NZ REMARK 480 GLU B 55 CG CD OE1 OE2 REMARK 480 LEU B 57 CG CD1 CD2 REMARK 480 GLU B 59 CG CD OE1 REMARK 480 ASN B 60 CG OD1 ND2 REMARK 480 ASN B 61 CG OD1 ND2 REMARK 480 LEU B 62 CG CD1 CD2 REMARK 480 ASN B 63 CG OD1 ND2 REMARK 480 LEU B 64 CG CD1 CD2 REMARK 480 LYS B 66 CG CD CE NZ REMARK 480 GLU B 69 CB CG CD OE1 OE2 REMARK 480 GLU B 93 CG CD OE1 OE2 REMARK 480 PHE B 105 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 GLU B 106 CG CD OE1 OE2 REMARK 480 GLU B 109 CG CD OE1 OE2 REMARK 480 GLU B 110 CB CG CD OE1 OE2 REMARK 480 GLN B 111 CG CD OE1 NE2 REMARK 480 ARG B 113 CG CD NE CZ NH1 NH2 REMARK 480 MET B 117 CG SD CE REMARK 480 LYS B 120 CG CD CE NZ REMARK 480 LYS B 128 CG CD CE NZ REMARK 480 LYS B 131 CG CD CE NZ REMARK 480 ASN B 132 CG OD1 ND2 REMARK 480 GLN B 152 CG CD OE1 NE2 REMARK 480 LEU B 158 CG CD1 CD2 REMARK 480 MET B 161 CG SD REMARK 480 LYS C 244 CD CE NZ REMARK 480 LYS C 252 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 95 CD GLU B 95 OE2 0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP C 249 CB - CA - C ANGL. DEV. = -15.5 DEGREES REMARK 500 TRP C 249 CG - CD2 - CE3 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 6 9.44 -63.28 REMARK 500 GLU A 12 -83.57 -60.06 REMARK 500 LEU A 18 -97.80 -39.70 REMARK 500 HIS A 19 41.11 -70.27 REMARK 500 GLU A 30 -92.54 -64.39 REMARK 500 LYS A 31 -63.88 -11.88 REMARK 500 PHE A 36 -8.46 -144.23 REMARK 500 HIS A 37 -12.46 69.51 REMARK 500 ALA A 40 -1.29 -54.31 REMARK 500 ASN A 48 -48.10 -135.99 REMARK 500 HIS A 49 -10.05 -162.63 REMARK 500 THR A 51 109.37 -48.38 REMARK 500 ILE A 60 -106.62 -85.44 REMARK 500 THR A 63 10.90 -142.86 REMARK 500 PHE A 86 47.20 36.58 REMARK 500 GLN A 88 -4.26 -169.99 REMARK 500 GLU A 90 49.29 -78.61 REMARK 500 VAL A 93 -68.94 -109.07 REMARK 500 ILE A 113 149.48 -175.70 REMARK 500 TRP A 124 -174.10 176.97 REMARK 500 ALA A 143 -87.59 11.56 REMARK 500 PRO A 157 -75.05 -66.95 REMARK 500 VAL A 162 -178.32 -52.58 REMARK 500 PHE A 169 40.49 74.42 REMARK 500 ASN A 171 81.15 -67.64 REMARK 500 ASN A 180 142.42 -173.86 REMARK 500 PRO A 194 -36.86 -33.71 REMARK 500 SER A 211 -56.67 -7.36 REMARK 500 GLU A 213 64.98 -67.91 REMARK 500 SER A 216 34.90 -74.20 REMARK 500 TRP A 247 97.98 -56.96 REMARK 500 PRO A 251 120.62 -31.90 REMARK 500 THR A 255 23.07 -153.74 REMARK 500 ASP A 266 87.19 42.38 REMARK 500 PRO A 269 -120.74 -25.45 REMARK 500 PHE A 270 84.57 -54.40 REMARK 500 GLU A 272 70.81 -106.33 REMARK 500 ASP A 283 10.66 -66.75 REMARK 500 ILE A 298 -151.90 -74.55 REMARK 500 ARG B 24 21.63 -69.01 REMARK 500 ILE B 25 -57.91 -139.53 REMARK 500 ASP B 26 -8.74 -58.69 REMARK 500 ARG B 40 -72.01 -72.43 REMARK 500 ASN B 45 -11.55 -164.25 REMARK 500 GLU B 51 -95.06 -48.08 REMARK 500 GLU B 55 52.02 -100.72 REMARK 500 ALA B 56 -89.60 -55.90 REMARK 500 LEU B 57 73.12 67.04 REMARK 500 ALA B 58 -133.87 -111.61 REMARK 500 GLU B 59 -27.94 -151.15 REMARK 500 REMARK 500 THIS ENTRY HAS 99 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1P9M A 1 299 UNP P40189 IL6RB_HUMAN 23 321 DBREF 1P9M B 1 184 UNP P05231 IL6_HUMAN 29 212 DBREF 1P9M C 96 296 UNP P08887 IL6RA_HUMAN 115 315 SEQADV 1P9M ALA B -1 UNP P05231 CLONING ARTIFACT SEQADV 1P9M PRO B 0 UNP P05231 CLONING ARTIFACT SEQRES 1 A 299 GLU LEU LEU ASP PRO CYS GLY TYR ILE SER PRO GLU SER SEQRES 2 A 299 PRO VAL VAL GLN LEU HIS SER ASN PHE THR ALA VAL CYS SEQRES 3 A 299 VAL LEU LYS GLU LYS CYS MET ASP TYR PHE HIS VAL ASN SEQRES 4 A 299 ALA ASN TYR ILE VAL TRP LYS THR ASN HIS PHE THR ILE SEQRES 5 A 299 PRO LYS GLU GLN TYR THR ILE ILE ASN ARG THR ALA SER SEQRES 6 A 299 SER VAL THR PHE THR ASP ILE ALA SER LEU ASN ILE GLN SEQRES 7 A 299 LEU THR CYS ASN ILE LEU THR PHE GLY GLN LEU GLU GLN SEQRES 8 A 299 ASN VAL TYR GLY ILE THR ILE ILE SER GLY LEU PRO PRO SEQRES 9 A 299 GLU LYS PRO LYS ASN LEU SER CYS ILE VAL ASN GLU GLY SEQRES 10 A 299 LYS LYS MET ARG CYS GLU TRP ASP GLY GLY ARG GLU THR SEQRES 11 A 299 HIS LEU GLU THR ASN PHE THR LEU LYS SER GLU TRP ALA SEQRES 12 A 299 THR HIS LYS PHE ALA ASP CYS LYS ALA LYS ARG ASP THR SEQRES 13 A 299 PRO THR SER CYS THR VAL ASP TYR SER THR VAL TYR PHE SEQRES 14 A 299 VAL ASN ILE GLU VAL TRP VAL GLU ALA GLU ASN ALA LEU SEQRES 15 A 299 GLY LYS VAL THR SER ASP HIS ILE ASN PHE ASP PRO VAL SEQRES 16 A 299 TYR LYS VAL LYS PRO ASN PRO PRO HIS ASN LEU SER VAL SEQRES 17 A 299 ILE ASN SER GLU GLU LEU SER SER ILE LEU LYS LEU THR SEQRES 18 A 299 TRP THR ASN PRO SER ILE LYS SER VAL ILE ILE LEU LYS SEQRES 19 A 299 TYR ASN ILE GLN TYR ARG THR LYS ASP ALA SER THR TRP SEQRES 20 A 299 SER GLN ILE PRO PRO GLU ASP THR ALA SER THR ARG SER SEQRES 21 A 299 SER PHE THR VAL GLN ASP LEU LYS PRO PHE THR GLU TYR SEQRES 22 A 299 VAL PHE ARG ILE ARG CYS MET LYS GLU ASP GLY LYS GLY SEQRES 23 A 299 TYR TRP SER ASP TRP SER GLU GLU ALA SER GLY ILE THR SEQRES 1 B 186 ALA PRO PRO VAL PRO PRO GLY GLU ASP SER LYS ASP VAL SEQRES 2 B 186 ALA ALA PRO HIS ARG GLN PRO LEU THR SER SER GLU ARG SEQRES 3 B 186 ILE ASP LYS GLN ILE ARG TYR ILE LEU ASP GLY ILE SER SEQRES 4 B 186 ALA LEU ARG LYS GLU THR CYS ASN LYS SER ASN MET CYS SEQRES 5 B 186 GLU SER SER LYS GLU ALA LEU ALA GLU ASN ASN LEU ASN SEQRES 6 B 186 LEU PRO LYS MET ALA GLU LYS ASP GLY CYS PHE GLN SER SEQRES 7 B 186 GLY PHE ASN GLU GLU THR CYS LEU VAL LYS ILE ILE THR SEQRES 8 B 186 GLY LEU LEU GLU PHE GLU VAL TYR LEU GLU TYR LEU GLN SEQRES 9 B 186 ASN ARG PHE GLU SER SER GLU GLU GLN ALA ARG ALA VAL SEQRES 10 B 186 GLN MET SER THR LYS VAL LEU ILE GLN PHE LEU GLN LYS SEQRES 11 B 186 LYS ALA LYS ASN LEU ASP ALA ILE THR THR PRO ASP PRO SEQRES 12 B 186 THR THR ASN ALA SER LEU LEU THR LYS LEU GLN ALA GLN SEQRES 13 B 186 ASN GLN TRP LEU GLN ASP MET THR THR HIS LEU ILE LEU SEQRES 14 B 186 ARG SER PHE LYS GLU PHE LEU GLN SER SER LEU ARG ALA SEQRES 15 B 186 LEU ARG GLN MET SEQRES 1 C 201 GLU GLU PRO GLN LEU SER CYS PHE ARG LYS SER PRO LEU SEQRES 2 C 201 SER ASN VAL VAL CYS GLU TRP GLY PRO ARG SER THR PRO SEQRES 3 C 201 SER LEU THR THR LYS ALA VAL LEU LEU VAL ARG LYS PHE SEQRES 4 C 201 GLN ASN SER PRO ALA GLU ASP PHE GLN GLU PRO CYS GLN SEQRES 5 C 201 TYR SER GLN GLU SER GLN LYS PHE SER CYS GLN LEU ALA SEQRES 6 C 201 VAL PRO GLU GLY ASP SER SER PHE TYR ILE VAL SER MET SEQRES 7 C 201 CYS VAL ALA SER SER VAL GLY SER LYS PHE SER LYS THR SEQRES 8 C 201 GLN THR PHE GLN GLY CYS GLY ILE LEU GLN PRO ASP PRO SEQRES 9 C 201 PRO ALA ASN ILE THR VAL THR ALA VAL ALA ARG ASN PRO SEQRES 10 C 201 ARG TRP LEU SER VAL THR TRP GLN ASP PRO HIS SER TRP SEQRES 11 C 201 ASN SER SER PHE TYR ARG LEU ARG PHE GLU LEU ARG TYR SEQRES 12 C 201 ARG ALA GLU ARG SER LYS THR PHE THR THR TRP MET VAL SEQRES 13 C 201 LYS ASP LEU GLN HIS HIS CYS VAL ILE HIS ASP ALA TRP SEQRES 14 C 201 SER GLY LEU ARG HIS VAL VAL GLN LEU ARG ALA GLN GLU SEQRES 15 C 201 GLU PHE GLY GLN GLY GLU TRP SER GLU TRP SER PRO GLU SEQRES 16 C 201 ALA MET GLY THR PRO TRP HELIX 1 1 LYS A 29 PHE A 36 1 8 HELIX 2 2 SER B 22 LYS B 27 1 6 HELIX 3 3 LYS B 27 CYS B 44 1 18 HELIX 4 4 ALA B 68 GLY B 72 5 5 HELIX 5 5 ASN B 79 GLN B 102 1 24 HELIX 6 6 SER B 108 LYS B 129 1 22 HELIX 7 7 THR B 142 GLN B 152 1 11 HELIX 8 8 ASN B 155 GLN B 183 1 29 SHEET 1 A 4 GLY A 7 SER A 10 0 SHEET 2 A 4 VAL A 25 LEU A 28 -1 O VAL A 27 N TYR A 8 SHEET 3 A 4 ALA A 64 SER A 66 -1 O SER A 65 N CYS A 26 SHEET 4 A 4 THR A 58 ILE A 59 -1 N THR A 58 O SER A 66 SHEET 1 B 3 VAL A 44 LYS A 46 0 SHEET 2 B 3 THR A 80 ASN A 82 -1 O ASN A 82 N VAL A 44 SHEET 3 B 3 ASN A 92 GLY A 95 -1 O VAL A 93 N CYS A 81 SHEET 1 C 3 LYS A 108 SER A 111 0 SHEET 2 C 3 ARG A 121 ASP A 125 -1 O ASP A 125 N LYS A 108 SHEET 3 C 3 CYS A 160 THR A 161 -1 O CYS A 160 N CYS A 122 SHEET 1 D 2 VAL A 114 ASN A 115 0 SHEET 2 D 2 VAL A 198 LYS A 199 1 O LYS A 199 N VAL A 114 SHEET 1 E 4 HIS A 145 LYS A 146 0 SHEET 2 E 4 ASN A 135 TRP A 142 -1 N TRP A 142 O HIS A 145 SHEET 3 E 4 ILE A 172 GLU A 179 -1 O GLU A 173 N GLU A 141 SHEET 4 E 4 VAL A 185 THR A 186 -1 O VAL A 185 N ALA A 178 SHEET 1 F 4 CYS A 150 LYS A 151 0 SHEET 2 F 4 ASN A 135 TRP A 142 -1 N LEU A 138 O CYS A 150 SHEET 3 F 4 ILE A 172 GLU A 179 -1 O GLU A 173 N GLU A 141 SHEET 4 F 4 ILE A 190 PHE A 192 -1 O PHE A 192 N ILE A 172 SHEET 1 G 3 SER A 207 ILE A 209 0 SHEET 2 G 3 LEU A 218 THR A 221 -1 O LYS A 219 N ILE A 209 SHEET 3 G 3 SER A 261 VAL A 264 -1 O PHE A 262 N LEU A 220 SHEET 1 H 4 SER A 248 GLN A 249 0 SHEET 2 H 4 LEU A 233 THR A 241 -1 N TYR A 239 O SER A 248 SHEET 3 H 4 TYR A 273 LYS A 281 -1 O VAL A 274 N ARG A 240 SHEET 4 H 4 ALA A 295 GLY A 297 -1 O ALA A 295 N PHE A 275 SHEET 1 I 5 LYS C 154 CYS C 157 0 SHEET 2 I 5 GLU C 140 SER C 149 -1 N GLN C 147 O SER C 156 SHEET 3 I 5 VAL C 128 LYS C 133 -1 N LYS C 133 O GLU C 140 SHEET 4 I 5 TYR C 169 ALA C 176 -1 O SER C 172 N LEU C 130 SHEET 5 I 5 SER C 181 LYS C 182 -1 O LYS C 182 N VAL C 175 SHEET 1 J 5 LYS C 154 CYS C 157 0 SHEET 2 J 5 GLU C 140 SER C 149 -1 N GLN C 147 O SER C 156 SHEET 3 J 5 VAL C 128 LYS C 133 -1 N LYS C 133 O GLU C 140 SHEET 4 J 5 TYR C 169 ALA C 176 -1 O SER C 172 N LEU C 130 SHEET 5 J 5 GLN C 187 PHE C 189 -1 O GLN C 187 N VAL C 171 SHEET 1 K 3 ALA C 201 THR C 206 0 SHEET 2 K 3 LEU C 215 GLN C 220 -1 O SER C 216 N THR C 206 SHEET 3 K 3 CYS C 258 ILE C 260 -1 O ILE C 260 N LEU C 215 SHEET 1 L 3 THR C 247 MET C 250 0 SHEET 2 L 3 LEU C 232 ALA C 240 -1 N TYR C 238 O THR C 247 SHEET 3 L 3 ALA C 275 GLU C 277 -1 O GLN C 276 N ARG C 233 SHEET 1 M 4 THR C 247 MET C 250 0 SHEET 2 M 4 LEU C 232 ALA C 240 -1 N TYR C 238 O THR C 247 SHEET 3 M 4 HIS C 269 GLN C 272 -1 O VAL C 270 N ARG C 239 SHEET 4 M 4 ALA C 291 GLY C 293 -1 O GLY C 293 N HIS C 269 SSBOND 1 CYS A 6 CYS A 32 1555 1555 2.03 SSBOND 2 CYS A 26 CYS A 81 1555 1555 2.03 SSBOND 3 CYS A 112 CYS A 122 1555 1555 2.03 SSBOND 4 CYS A 150 CYS A 160 1555 1555 2.03 SSBOND 5 CYS B 44 CYS B 50 1555 1555 2.03 SSBOND 6 CYS B 73 CYS B 83 1555 1555 2.03 SSBOND 7 CYS C 102 CYS C 113 1555 1555 2.03 SSBOND 8 CYS C 146 CYS C 157 1555 1555 2.03 CISPEP 1 SER A 10 PRO A 11 0 0.04 CRYST1 279.800 279.800 96.700 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003574 0.002063 0.000000 0.00000 SCALE2 0.000000 0.004127 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010341 0.00000