PDB Short entry for 1PA8 HEADER TRANSFERASE 13-MAY-03 1PA8 TITLE IN SILICO STRUCTURE OF PROTEIN KINASE 7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION PROTEIN KINASE 7; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CDK-ACTIVATING KINASE, CAK, TFIIH BASAL COMPND 5 TRANSCRIPTION FACTOR COMPLEX KINASE SUBUNIT, 39 KDA COMPND 6 PROTEIN KINASE, P39 MO15, STK1, CAK1; COMPND 7 EC: 2.7.1.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN KEYWDS TRANSFERASE, SERINE/THREONINE-PROTEIN KINASE, ATP-BINDING, KEYWDS 2 PHOSPHORYLATION, CELL CYCLE, CELL DIVISION, NUCLEAR PROTEIN, KEYWDS 3 TRANSCRIPTION REGULATION, DNA REPAIR, IN SILICO, MALLENA EXPDTA THEORETICAL MODEL AUTHOR S.C.MALLENA,M.R.GINNARAM,M.SHYAM CHARAN REVDAT 1 03-JUN-03 1PA8 0 JRNL AUTH S.C.MALLENA,M.R.GINNARAM,M.SHYAM CHARAN JRNL TITL IN SILICO STRUCTURE OF PROTEIN KINASE 7 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.-P.TASSAN,S.J.SCHULTZ,J.BARTEK,E.A.NIGG REMARK 1 TITL CELL CYCLE ANALYSIS OF THE ACTIVITY, SUBCELLULAR REMARK 1 TITL 2 LOCALIZATION, AND SUBUNIT COMPOSITION OF HUMAN CAK REMARK 1 TITL 3 (CDK-ACTIVATING KINASE) REMARK 1 REF J.CELL BIOL. V. 127 467 1994 REMARK 1 REFN ASTM JCLBA3 US ISSN 0021-9525 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MODELER - INSIGHT II REMARK 3 AUTHORS : ALI, A. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PA8 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-2003. REMARK 100 THE RCSB ID CODE IS RCSB019201. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: MODELER IS AN AUTOMATED HOMOLOGY MODELING SCHEME REMARK 220 DESIGNED TO FIND THE MOST PROBABLE THREE DIMENSIONAL REMARK 220 STRUCTURE OF A PROTEIN, GIVEN ITS AMINO ACID SEQUENCE REMARK 220 AND ITS ALIGNMENT WITH RELATED STRUCTURES. IT DERIVES 3D REMARK 220 PROTEIN MODELS WITHOUT THE TIME CONSUMING SEPARATE REMARK 220 STAGES OF CORE REGION IDENTIFICATION AND LOOP REGION REMARK 220 BUILDING OR SEARCHING THAT ARE INHERENT IN MANUAL REMARK 220 HOMOLOGY MODELING SCHEMES REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 132 138.03 74.98 REMARK 500 GLU A 153 -102.21 92.15 REMARK 500 LEU A 160 163.36 80.98 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FIN RELATED DB: PDB REMARK 900 CYCLIN A - CYCLIN-DEPENDENT KINASE 2 COMPLEX DBREF 1PA8 A 1 166 UNP P50613 CDK7_HUMAN 181 346 SEQRES 1 A 166 PRO GLU LEU LEU PHE GLY ALA ARG MET TYR GLY VAL GLY SEQRES 2 A 166 VAL ASP MET TRP ALA VAL GLY CYS ILE LEU ALA GLU LEU SEQRES 3 A 166 LEU LEU ARG VAL PRO PHE LEU PRO GLY ASP SER ASP LEU SEQRES 4 A 166 ASP GLN LEU THR ARG ILE PHE GLU THR LEU GLY THR PRO SEQRES 5 A 166 THR GLU GLU GLN TRP PRO ASP MET CYS SER LEU PRO ASP SEQRES 6 A 166 TYR VAL THR PHE LYS SER PHE PRO GLY ILE PRO LEU HIS SEQRES 7 A 166 HIS ILE PHE SER ALA ALA GLY ASP ASP LEU LEU ASP LEU SEQRES 8 A 166 ILE GLN GLY LEU PHE LEU PHE ASN PRO CYS ALA ARG ILE SEQRES 9 A 166 THR ALA THR GLN ALA LEU LYS MET LYS TYR PHE SER ASN SEQRES 10 A 166 ARG PRO GLY PRO THR PRO GLY CYS GLN LEU PRO ARG PRO SEQRES 11 A 166 ASN CYS PRO VAL GLU THR LEU LYS GLU GLN SER ASN PRO SEQRES 12 A 166 ALA LEU ALA ILE LYS ARG LYS ARG THR GLU ALA LEU GLU SEQRES 13 A 166 GLN GLY GLY LEU PRO LYS LYS LEU ILE PHE HELIX 1 1 PRO A 1 GLY A 6 1 6 HELIX 2 2 GLY A 11 ARG A 29 1 19 HELIX 3 3 SER A 37 GLY A 50 1 14 HELIX 4 4 ASP A 59 LEU A 63 5 5 HELIX 5 5 PRO A 76 PHE A 81 1 6 HELIX 6 6 GLY A 85 LEU A 97 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000