PDB Short entry for 1PAJ HEADER FIMBRIAL PROTEIN 25-AUG-93 1PAJ TITLE NMR SOLUTION STRUCTURE AND FLEXIBILITY OF A PEPTIDE ANTIGEN TITLE 2 REPRESENTING THE RECEPTOR BINDING DOMAIN OF PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIMBRIAL PROTEIN PRECURSOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287 KEYWDS FIMBRIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 12 AUTHOR C.MCINNES,F.D.SONNICHSEN,C.M.KAY,R.S.HODGES,B.D.SYKES REVDAT 3 29-NOV-17 1PAJ 1 REMARK HELIX REVDAT 2 24-FEB-09 1PAJ 1 VERSN REVDAT 1 31-JAN-94 1PAJ 0 JRNL AUTH C.MCINNES,F.D.SONNICHSEN,C.M.KAY,R.S.HODGES,B.D.SYKES JRNL TITL NMR SOLUTION STRUCTURE AND FLEXIBILITY OF A PEPTIDE ANTIGEN JRNL TITL 2 REPRESENTING THE RECEPTOR BINDING DOMAIN OF PSEUDOMONAS JRNL TITL 3 AERUGINOSA. JRNL REF BIOCHEMISTRY V. 32 13432 1993 JRNL REFN ISSN 0006-2960 JRNL PMID 8257679 JRNL DOI 10.1021/BI00212A008 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.MCINNES,C.M.KAY,R.S.HODGES,B.D.SYKES REMARK 1 TITL CONFORMATIONAL DIFFERENCES BETWEEN THE CIS AND TRANS PROLINE REMARK 1 TITL 2 ISOMERS OF A PEPTIDE ANTIGEN REPRESENTING THE RECEPTOR REMARK 1 TITL 3 BINDING DOMAIN OF PSEUDOMONAS AERUGINOSA REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PAJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175566. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 12 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 GLU A 135 CD GLU A 135 OE2 0.120 REMARK 500 2 GLU A 135 CD GLU A 135 OE2 0.120 REMARK 500 3 GLU A 135 CD GLU A 135 OE2 0.120 REMARK 500 4 GLU A 135 CD GLU A 135 OE2 0.120 REMARK 500 5 GLU A 135 CD GLU A 135 OE2 0.120 REMARK 500 6 GLU A 135 CD GLU A 135 OE2 0.120 REMARK 500 7 GLU A 135 CD GLU A 135 OE2 0.120 REMARK 500 8 GLU A 135 CD GLU A 135 OE2 0.120 REMARK 500 9 GLU A 135 CD GLU A 135 OE2 0.120 REMARK 500 10 GLU A 135 CD GLU A 135 OE2 0.120 REMARK 500 11 GLU A 135 CD GLU A 135 OE2 0.120 REMARK 500 12 GLU A 135 CD GLU A 135 OE2 0.120 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ASP A 132 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 1 ASP A 134 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 1 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 2 ASP A 132 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 2 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 3 ASP A 132 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 3 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 4 ASP A 132 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 4 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 5 ASP A 132 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 5 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 6 ASP A 132 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 6 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 7 ASP A 132 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 7 ASP A 134 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 8 ASP A 132 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 8 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 9 ASP A 132 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 9 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 10 ASP A 132 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 10 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 11 ASP A 132 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 11 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 12 ASP A 132 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 12 ASP A 134 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 129 -86.21 -74.53 REMARK 500 1 SER A 131 -73.86 -167.50 REMARK 500 1 GLN A 133 49.16 -90.85 REMARK 500 1 ASP A 134 152.79 65.13 REMARK 500 1 CYS A 142 -75.35 -64.68 REMARK 500 2 CYS A 129 -85.80 -88.82 REMARK 500 2 ASP A 132 -111.68 -115.25 REMARK 500 3 ASP A 132 -103.53 -97.96 REMARK 500 3 GLN A 133 79.01 -116.88 REMARK 500 4 CYS A 129 -105.72 -116.78 REMARK 500 4 THR A 130 117.45 -166.01 REMARK 500 4 ASP A 132 -106.51 -144.07 REMARK 500 4 GLN A 133 74.61 -118.00 REMARK 500 4 ASP A 134 -64.97 70.67 REMARK 500 5 CYS A 129 -81.67 -73.42 REMARK 500 5 ASP A 132 -20.92 76.12 REMARK 500 5 ASP A 134 132.86 69.16 REMARK 500 6 CYS A 129 -71.44 -100.86 REMARK 500 6 SER A 143 82.33 60.67 REMARK 500 7 CYS A 129 -78.81 -115.47 REMARK 500 7 ASP A 132 -99.32 -138.20 REMARK 500 7 GLN A 133 51.81 -112.63 REMARK 500 7 ASP A 134 62.52 -160.65 REMARK 500 7 CYS A 142 -87.06 -69.06 REMARK 500 8 CYS A 129 -108.14 -115.05 REMARK 500 8 SER A 131 85.34 56.26 REMARK 500 9 CYS A 129 -92.92 -92.88 REMARK 500 9 SER A 131 -101.59 -116.83 REMARK 500 9 ASP A 132 -25.36 -157.25 REMARK 500 9 GLN A 133 69.18 -105.53 REMARK 500 9 ASP A 134 -81.98 65.25 REMARK 500 9 PRO A 139 -176.26 -63.94 REMARK 500 9 SER A 143 96.87 70.14 REMARK 500 10 ASP A 132 -97.61 -103.67 REMARK 500 10 GLN A 133 77.36 -115.03 REMARK 500 10 ASP A 134 69.03 -115.46 REMARK 500 11 CYS A 129 -69.95 -102.02 REMARK 500 12 CYS A 129 -74.57 -114.69 REMARK 500 12 ASP A 132 -102.11 -117.22 REMARK 500 12 GLN A 133 78.25 -116.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 135 GLN A 136 4 147.07 REMARK 500 PHE A 137 ILE A 138 6 144.43 REMARK 500 PHE A 137 ILE A 138 8 144.96 REMARK 500 PHE A 137 ILE A 138 11 144.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OH A 145 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PAK RELATED DB: PDB DBREF 1PAJ A 128 144 UNP P02973 FMPA_PSEAE 134 150 SEQRES 1 A 18 ACE LYS CYS THR SER ASP GLN ASP GLU GLN PHE ILE PRO SEQRES 2 A 18 LYS GLY CYS SER LYS HET ACE A 127 6 HET OH A 145 2 HETNAM ACE ACETYL GROUP HETNAM OH HYDROXIDE ION FORMUL 1 ACE C2 H4 O FORMUL 2 OH H O 1- SSBOND 1 CYS A 129 CYS A 142 1555 1555 2.00 LINK C ACE A 127 N LYS A 128 1555 1555 1.34 LINK C LYS A 144 O OH A 145 1555 1555 1.38 SITE 1 AC1 2 SER A 143 LYS A 144 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000