PDB Short entry for 1PEW HEADER IMMUNE SYSTEM 22-MAY-03 1PEW TITLE HIGH RESOLUTION CRYSTAL STRUCTURE OF JTO2, A MUTANT OF THE NON- TITLE 2 AMYLOIDOGENIC LAMBA6 LIGHT CHAIN, JTO COMPND MOL_ID: 1; COMPND 2 MOLECULE: JTO2, A LAMBDA-6 TYPE IMMUNOGLOBULIN LIGHT CHAIN, VARIABLE COMPND 3 DOMAIN; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: IMMUNOGLOBULIN LIGHT CHAIN, VARIABLE DOMAIN; COMPND 6 SYNONYM: IMMUNOGLOBULIN LAMBDA LIGHT CHAIN VLJ REGION; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: JTO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-27B KEYWDS BETA SHEET, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.DEALWIS,V.GUPTA,M.WILKERSON REVDAT 4 16-AUG-23 1PEW 1 REMARK LINK REVDAT 3 13-JUL-11 1PEW 1 VERSN REVDAT 2 24-FEB-09 1PEW 1 VERSN REVDAT 1 13-JUL-04 1PEW 0 JRNL AUTH J.S.WALL,V.GUPTA,M.WILKERSON,M.SCHELL,R.LORIS,P.ADAMS, JRNL AUTH 2 A.SOLOMON,F.STEVENS,C.DEALWIS JRNL TITL STRUCTURAL BASIS OF LIGHT CHAIN AMYLOIDOGENICITY: COMPARISON JRNL TITL 2 OF THE THERMODYNAMIC PROPERTIES, FIBRILLOGENIC POTENTIAL AND JRNL TITL 3 TERTIARY STRUCTURAL FEATURES OF FOUR V(LAMBDA)6 PROTEINS JRNL REF J.MOL.RECOG. V. 17 323 2004 JRNL REFN ISSN 0952-3499 JRNL PMID 15227639 JRNL DOI 10.1002/JMR.681 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 31495 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1633 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2114 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1647 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.385 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1687 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2288 ; 1.290 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 212 ; 5.962 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 251 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1318 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 777 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 3 ; 0.208 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 139 ; 0.234 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.334 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.352 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1070 ; 0.530 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1727 ; 0.904 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 617 ; 1.565 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 561 ; 2.234 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9083-100.4335 -60.9006 REMARK 3 T TENSOR REMARK 3 T11: 0.1128 T22: 0.0011 REMARK 3 T33: 0.0781 T12: -0.0018 REMARK 3 T13: 0.0169 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 4.4054 L22: 3.3052 REMARK 3 L33: 3.7139 L12: 0.0468 REMARK 3 L13: -0.2215 L23: 0.6353 REMARK 3 S TENSOR REMARK 3 S11: -0.1720 S12: -0.2481 S13: -0.2559 REMARK 3 S21: 0.0664 S22: -0.0474 S23: 0.0979 REMARK 3 S31: 0.1194 S32: 0.0404 S33: 0.2194 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0555-117.2196 -37.5231 REMARK 3 T TENSOR REMARK 3 T11: 0.2495 T22: 0.2627 REMARK 3 T33: 0.1686 T12: 0.1953 REMARK 3 T13: 0.1179 T23: 0.1544 REMARK 3 L TENSOR REMARK 3 L11: 8.3907 L22: 2.8506 REMARK 3 L33: 6.3737 L12: -0.0137 REMARK 3 L13: -4.7509 L23: -0.9283 REMARK 3 S TENSOR REMARK 3 S11: 0.8133 S12: 0.8094 S13: 0.7787 REMARK 3 S21: 0.2501 S22: -0.0972 S23: 0.2009 REMARK 3 S31: -0.9510 S32: -0.8149 S33: -0.7161 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PEW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019279. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-01 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : RIGAKU AFC-5R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31495 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.51500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1CD0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA ACETATE, 0.8M AMM. SULFATE, REMARK 280 100MM CADMIUM CHLORIDE, 10% N-DECYL-B-D-MALTOSIDE, PH 5.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.14900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.07450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 69.22350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.14900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.22350 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 23.07450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -92.29800 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -220.73100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -46.14900 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 -220.73100 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 46.14900 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -92.29800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 41 REMARK 465 ARG B 41 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE B 66 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE1 HIS A 8 O HOH A 930 1.72 REMARK 500 ND2 ASN B 5 O HOH B 923 1.75 REMARK 500 CG ASN B 5 O HOH B 923 1.95 REMARK 500 O HIS B 8 O HOH B 908 2.02 REMARK 500 OD1 ASN B 5 O HOH B 923 2.03 REMARK 500 ND1 HIS A 8 O HOH A 930 2.13 REMARK 500 ND2 ASN B 5 O HOH B 957 2.17 REMARK 500 O HOH A 914 O HOH B 917 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 60 NH1 ARG B 94 7743 1.97 REMARK 500 CD2 HIS B 8 CD CD A 901 5554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 8 C SER A 9 N -0.169 REMARK 500 HIS B 8 CG HIS B 8 CD2 0.217 REMARK 500 HIS B 8 CG HIS B 8 ND1 0.178 REMARK 500 HIS B 8 CE1 HIS B 8 NE2 0.249 REMARK 500 GLN B 37 CD GLN B 37 NE2 0.173 REMARK 500 GLN B 38 C GLN B 38 O 0.260 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 7 O - C - N ANGL. DEV. = -11.5 DEGREES REMARK 500 ASP A 85 CB - CG - OD2 ANGL. DEV. = 8.4 DEGREES REMARK 500 ASP B 85 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 51 -44.11 77.33 REMARK 500 ASN A 52 11.50 -152.15 REMARK 500 LEU A 78 133.02 -35.04 REMARK 500 ALA A 84 168.80 178.24 REMARK 500 ASP A 92 68.96 -117.10 REMARK 500 ARG A 94 -84.63 121.96 REMARK 500 ASP B 51 -46.20 74.48 REMARK 500 ASN B 52 14.06 -149.36 REMARK 500 ALA B 93 70.09 38.53 REMARK 500 ARG B 94 -98.65 112.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 904 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 8 NE2 REMARK 620 2 HOH A 902 O 92.2 REMARK 620 3 SER B 42 N 111.2 116.8 REMARK 620 4 ASP B 85 OD1 97.6 124.1 110.3 REMARK 620 5 ASP B 85 OD2 62.3 88.9 154.2 50.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 903 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 50 OE2 REMARK 620 2 GLU A 50 OE1 53.6 REMARK 620 3 ASP B 60 OD1 107.9 87.6 REMARK 620 4 ASP B 60 OD2 77.9 96.1 45.1 REMARK 620 5 HOH B 913 O 62.9 112.8 92.4 48.4 REMARK 620 6 HOH B 916 O 131.8 80.5 80.9 126.1 165.1 REMARK 620 7 HOH B 938 O 148.7 156.9 87.6 96.4 90.0 76.4 REMARK 620 8 HOH B 941 O 87.6 104.1 164.3 140.9 92.7 90.5 77.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 902 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 60 OD1 REMARK 620 2 GLU B 50 OE1 92.0 REMARK 620 3 GLU B 50 OE2 99.4 54.1 REMARK 620 4 HOH B 911 O 78.9 117.7 66.9 REMARK 620 5 HOH B 918 O 77.0 81.3 135.3 149.7 REMARK 620 6 HOH B 950 O 78.4 163.9 139.8 73.4 83.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 901 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 85 OD1 REMARK 620 2 ASP A 85 OD2 54.0 REMARK 620 3 HOH A 903 O 102.9 155.8 REMARK 620 4 HOH A 904 O 151.3 101.6 102.6 REMARK 620 5 HOH A 905 O 87.4 81.8 106.4 72.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 904 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CD0 RELATED DB: PDB REMARK 900 WILD TYPE PROTEIN DBREF 1PEW A 2 108 UNP P06317 LV6C_HUMAN 2 111 DBREF 1PEW B 2 108 UNP P06317 LV6C_HUMAN 2 111 SEQRES 1 A 109 ASN PHE MET LEU ASN GLN PRO HIS SER VAL SER GLU SER SEQRES 2 A 109 PRO GLY LYS THR VAL THR ILE SER CYS THR ARG SER SER SEQRES 3 A 109 GLY ASN ILE ALA SER ASN TYR VAL GLN TRP TYR GLN GLN SEQRES 4 A 109 ARG SER ALA PRO ILE THR VAL ILE TYR GLU ASP ASN GLN SEQRES 5 A 109 ARG PRO SER GLY VAL PRO ASP ARG PHE ALA GLY SER ILE SEQRES 6 A 109 ASP ARG SER SER ASN SER ALA SER LEU THR ILE SER GLY SEQRES 7 A 109 LEU LYS THR GLU ASP GLU ALA ASP TYR TYR CYS GLN SER SEQRES 8 A 109 TYR ASP ALA ARG ASN VAL VAL PHE GLY GLY GLY THR ARG SEQRES 9 A 109 LEU THR VAL LEU GLY SEQRES 1 B 109 ASN PHE MET LEU ASN GLN PRO HIS SER VAL SER GLU SER SEQRES 2 B 109 PRO GLY LYS THR VAL THR ILE SER CYS THR ARG SER SER SEQRES 3 B 109 GLY ASN ILE ALA SER ASN TYR VAL GLN TRP TYR GLN GLN SEQRES 4 B 109 ARG SER ALA PRO ILE THR VAL ILE TYR GLU ASP ASN GLN SEQRES 5 B 109 ARG PRO SER GLY VAL PRO ASP ARG PHE ALA GLY SER ILE SEQRES 6 B 109 ASP ARG SER SER ASN SER ALA SER LEU THR ILE SER GLY SEQRES 7 B 109 LEU LYS THR GLU ASP GLU ALA ASP TYR TYR CYS GLN SER SEQRES 8 B 109 TYR ASP ALA ARG ASN VAL VAL PHE GLY GLY GLY THR ARG SEQRES 9 B 109 LEU THR VAL LEU GLY HET CD A 901 1 HET CD B 902 1 HET CD B 903 1 HET CD B 904 1 HETNAM CD CADMIUM ION FORMUL 3 CD 4(CD 2+) FORMUL 7 HOH *104(H2 O) HELIX 1 1 ASN A 27B ASN A 31 5 5 HELIX 2 2 LYS A 79 GLU A 83 5 5 HELIX 3 3 ASN B 27B ASN B 31 5 5 HELIX 4 4 ARG B 66B SER B 68 5 3 HELIX 5 5 LYS B 79 GLU B 83 5 5 SHEET 1 A 4 LEU A 4 ASN A 5 0 SHEET 2 A 4 VAL A 19 ARG A 25 -1 O THR A 24 N ASN A 5 SHEET 3 A 4 SER A 70 ILE A 75 -1 O LEU A 73 N ILE A 21 SHEET 4 A 4 PHE A 62 ASP A 66A-1 N ALA A 63 O THR A 74 SHEET 1 B 5 SER A 9 GLU A 13 0 SHEET 2 B 5 THR A 102 VAL A 106 1 O ARG A 103 N VAL A 11 SHEET 3 B 5 ALA A 84 ASP A 92 -1 N ALA A 84 O LEU A 104 SHEET 4 B 5 GLN A 34 GLN A 38 -1 N TYR A 36 O TYR A 87 SHEET 5 B 5 ILE A 45 ILE A 48 -1 O VAL A 47 N TRP A 35 SHEET 1 C 4 SER A 9 GLU A 13 0 SHEET 2 C 4 THR A 102 VAL A 106 1 O ARG A 103 N VAL A 11 SHEET 3 C 4 ALA A 84 ASP A 92 -1 N ALA A 84 O LEU A 104 SHEET 4 C 4 ASN A 95 PHE A 98 -1 O VAL A 97 N SER A 90 SHEET 1 D 4 LEU B 4 ASN B 5 0 SHEET 2 D 4 VAL B 19 ARG B 25 -1 O THR B 24 N ASN B 5 SHEET 3 D 4 SER B 70 ILE B 75 -1 O ALA B 71 N CYS B 23 SHEET 4 D 4 PHE B 62 ASP B 66A-1 N ASP B 66A O SER B 70 SHEET 1 E 5 SER B 9 GLU B 13 0 SHEET 2 E 5 THR B 102 VAL B 106 1 O ARG B 103 N VAL B 11 SHEET 3 E 5 ASP B 85 TYR B 91 -1 N TYR B 86 O THR B 102 SHEET 4 E 5 GLN B 34 GLN B 38 -1 N TYR B 36 O TYR B 87 SHEET 5 E 5 ILE B 45 ILE B 48 -1 O ILE B 48 N TRP B 35 SHEET 1 F 4 SER B 9 GLU B 13 0 SHEET 2 F 4 THR B 102 VAL B 106 1 O ARG B 103 N VAL B 11 SHEET 3 F 4 ASP B 85 TYR B 91 -1 N TYR B 86 O THR B 102 SHEET 4 F 4 VAL B 96 PHE B 98 -1 O VAL B 97 N SER B 90 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.05 SSBOND 2 CYS B 23 CYS B 88 1555 1555 2.03 LINK NE2 HIS A 8 CD CD B 904 5554 1555 3.03 LINK OE2 GLU A 50 CD CD B 903 3435 1555 2.43 LINK OE1 GLU A 50 CD CD B 903 3435 1555 2.38 LINK OD1 ASP A 60 CD CD B 902 3435 1555 2.23 LINK OD1 ASP A 85 CD CD A 901 1555 1555 2.36 LINK OD2 ASP A 85 CD CD A 901 1555 1555 2.31 LINK CD CD A 901 O HOH A 903 1555 1555 2.43 LINK CD CD A 901 O HOH A 904 1555 1555 2.60 LINK CD CD A 901 O HOH A 905 1555 1555 2.88 LINK O HOH A 902 CD CD B 904 5554 1555 2.48 LINK N SER B 42 CD CD B 904 5554 1555 2.19 LINK OE1 GLU B 50 CD CD B 902 1555 1555 2.55 LINK OE2 GLU B 50 CD CD B 902 1555 1555 2.26 LINK OD1 ASP B 60 CD CD B 903 1555 1555 2.21 LINK OD2 ASP B 60 CD CD B 903 1555 1555 3.05 LINK OD1 ASP B 85 CD CD B 904 1555 1555 2.50 LINK OD2 ASP B 85 CD CD B 904 1555 1555 2.54 LINK CD CD B 902 O HOH B 911 1555 1555 2.12 LINK CD CD B 902 O HOH B 918 1555 1555 2.25 LINK CD CD B 902 O HOH B 950 1555 1555 2.34 LINK CD CD B 903 O HOH B 913 1555 1555 1.79 LINK CD CD B 903 O HOH B 916 1555 1555 2.57 LINK CD CD B 903 O HOH B 938 1555 1555 2.27 LINK CD CD B 903 O HOH B 941 1555 1555 2.27 SITE 1 AC1 5 ASP A 85 HOH A 903 HOH A 904 HOH A 905 SITE 2 AC1 5 HIS B 8 SITE 1 AC2 5 ASP A 60 GLU B 50 HOH B 911 HOH B 918 SITE 2 AC2 5 HOH B 950 SITE 1 AC3 6 GLU A 50 ASP B 60 HOH B 913 HOH B 916 SITE 2 AC3 6 HOH B 938 HOH B 941 SITE 1 AC4 4 HIS A 8 HOH A 902 SER B 42 ASP B 85 CRYST1 73.577 73.577 92.298 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013591 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013591 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010834 0.00000