PDB Short entry for 1PG6 HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 27-MAY-03 1PG6 TITLE X-RAY CRYSTAL STRUCTURE OF PROTEIN SPYM3_0169 FROM STREPTOCOCCUS TITLE 2 PYOGENES. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET DR2. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN SPYM3_0169; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HYPOTHETICAL PROTEIN SPYM18_0222; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: ALL METHIONINES MODIFIED TO SEMET SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 3 ORGANISM_TAXID: 186103; SOURCE 4 STRAIN: MGAS8232; SOURCE 5 GENE: SPS0176; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS STRUCTURAL GENOMICS; STREPTOCOCCUS PYOGENES; SPYM3_0169, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 NESG, STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR A.KUZIN,I.LEE,W.EDSTROM,R.XIAO,T.ACTON,B.ROST,G.MONTELIONE,J.HUNT, AUTHOR 2 L.TONG,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 13-JUL-11 1PG6 1 VERSN REVDAT 3 24-FEB-09 1PG6 1 VERSN REVDAT 2 25-JAN-05 1PG6 1 AUTHOR KEYWDS REMARK REVDAT 1 02-DEC-03 1PG6 0 JRNL AUTH A.KUZIN,I.LEE,W.EDSTROM,R.XIAO,T.ACTON,B.ROST,G.MONTELIONE, JRNL AUTH 2 J.HUNT,L.TONG JRNL TITL X-RAY STRUCTURE OF HYPOTHETICAL PROTEIN SPYM3_0169 FROM JRNL TITL 2 STREPTOCOCCUS PYOGENES JRNL REF TO BE PUBLISHED 2003 JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 333852.260 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 40990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2063 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5280 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE : 0.2370 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 286 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1650 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.48000 REMARK 3 B22 (A**2) : -1.69000 REMARK 3 B33 (A**2) : 3.17000 REMARK 3 B12 (A**2) : -0.41000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.10 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.58 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.450 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.400 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.520 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.590 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 57.05 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PG6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAY-03. REMARK 100 THE RCSB ID CODE IS RCSB019306. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800, 0.9802, 0.9720 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CACL2, HEPES-NA, PEG 400, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 303K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 35.77050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 20.65211 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 72.30900 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 35.77050 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 20.65211 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 72.30900 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 35.77050 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 20.65211 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 72.30900 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 35.77050 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 20.65211 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 72.30900 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 35.77050 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 20.65211 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 72.30900 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 35.77050 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 20.65211 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 72.30900 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 41.30422 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 144.61800 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 41.30422 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 144.61800 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 41.30422 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 144.61800 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 41.30422 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 144.61800 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 41.30422 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 144.61800 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 41.30422 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 144.61800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -141.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 71.54100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 35.77050 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 61.95632 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A -6 REMARK 465 GLU A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 VAL A 2 REMARK 465 ASP A 3 REMARK 465 ASN A 4 REMARK 465 GLY A 51 REMARK 465 LYS A 52 REMARK 465 GLY A 53 REMARK 465 SER A 54 REMARK 465 LYS A 131 REMARK 465 ALA A 132 REMARK 465 LEU A 133 REMARK 465 PHE A 134 REMARK 465 GLY A 135 REMARK 465 GLY A 136 REMARK 465 GLN A 137 REMARK 465 PRO A 232 REMARK 465 THR A 233 REMARK 465 SER A 234 REMARK 465 SER A 235 REMARK 465 ASN A 236 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 15 OE1 GLN A 15 3665 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 59 N - CA - C ANGL. DEV. = -17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 58 15.02 58.45 REMARK 500 ASN A 128 55.15 -69.28 REMARK 500 ILE A 129 171.92 53.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 433 DISTANCE = 5.09 ANGSTROMS REMARK 525 HOH A 467 DISTANCE = 6.42 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 237 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 92 O REMARK 620 2 THR A 92 OG1 76.2 REMARK 620 3 SER A 155 O 104.6 86.3 REMARK 620 4 HOH A 305 O 84.4 157.6 88.0 REMARK 620 5 ASN A 154 OD1 143.4 82.6 103.2 119.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 238 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 304 O REMARK 620 2 GLY A 34 O 83.1 REMARK 620 3 MSE A 36 O 166.4 106.7 REMARK 620 4 HOH A 302 O 96.4 69.3 95.9 REMARK 620 5 ASP A 172 OD2 80.4 149.7 94.4 87.4 REMARK 620 6 GLU A 201 OE1 78.4 122.7 88.3 165.5 78.4 REMARK 620 7 GLU A 201 OE2 86.2 76.2 87.2 144.8 127.5 49.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 238 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: DR2 RELATED DB: TARGETDB DBREF 1PG6 A 1 236 UNP Q8P2Q3 Q8P2Q3_STRP3 1 236 SEQADV 1PG6 LEU A -6 UNP Q8P2Q3 EXPRESSION TAG SEQADV 1PG6 GLU A -5 UNP Q8P2Q3 EXPRESSION TAG SEQADV 1PG6 HIS A -4 UNP Q8P2Q3 EXPRESSION TAG SEQADV 1PG6 HIS A -3 UNP Q8P2Q3 EXPRESSION TAG SEQADV 1PG6 HIS A -2 UNP Q8P2Q3 EXPRESSION TAG SEQADV 1PG6 HIS A -1 UNP Q8P2Q3 EXPRESSION TAG SEQADV 1PG6 HIS A 0 UNP Q8P2Q3 EXPRESSION TAG SEQADV 1PG6 MSE A 1 UNP Q8P2Q3 MET 1 MODIFIED RESIDUE SEQADV 1PG6 MSE A 6 UNP Q8P2Q3 MET 6 MODIFIED RESIDUE SEQADV 1PG6 MSE A 14 UNP Q8P2Q3 MET 14 MODIFIED RESIDUE SEQADV 1PG6 MSE A 36 UNP Q8P2Q3 MET 36 MODIFIED RESIDUE SEQADV 1PG6 MSE A 67 UNP Q8P2Q3 MET 67 MODIFIED RESIDUE SEQADV 1PG6 MSE A 73 UNP Q8P2Q3 MET 73 MODIFIED RESIDUE SEQADV 1PG6 MSE A 79 UNP Q8P2Q3 MET 79 MODIFIED RESIDUE SEQADV 1PG6 MSE A 124 UNP Q8P2Q3 MET 124 MODIFIED RESIDUE SEQADV 1PG6 MSE A 143 UNP Q8P2Q3 MET 143 MODIFIED RESIDUE SEQADV 1PG6 MSE A 169 UNP Q8P2Q3 MET 169 MODIFIED RESIDUE SEQADV 1PG6 MSE A 194 UNP Q8P2Q3 MET 194 MODIFIED RESIDUE SEQRES 1 A 243 LEU GLU HIS HIS HIS HIS HIS MSE VAL ASP ASN ARG MSE SEQRES 2 A 243 ARG PHE THR ILE ASP GLN ASN MSE GLN PHE PRO LEU VAL SEQRES 3 A 243 GLU ILE ASP LEU GLU HIS GLY GLY SER VAL TYR LEU GLN SEQRES 4 A 243 GLN GLY SER MSE VAL TYR HIS THR GLU ASN VAL THR LEU SEQRES 5 A 243 ASN THR LYS LEU ASN GLY LYS GLY SER GLY LEU GLY LYS SEQRES 6 A 243 LEU VAL GLY ALA ILE GLY ARG SER MSE VAL SER GLY GLU SEQRES 7 A 243 SER MSE PHE ILE THR GLN ALA MSE SER ASN GLY ASP GLY SEQRES 8 A 243 LYS LEU ALA LEU ALA PRO ASN THR PRO GLY GLN ILE VAL SEQRES 9 A 243 ALA LEU GLU LEU GLY GLU LYS GLN TYR ARG LEU ASN ASP SEQRES 10 A 243 GLY ALA PHE LEU ALA LEU ASP GLY SER ALA GLN TYR LYS SEQRES 11 A 243 MSE GLU ARG GLN ASN ILE GLY LYS ALA LEU PHE GLY GLY SEQRES 12 A 243 GLN GLY GLY LEU PHE VAL MSE THR THR GLU GLY LEU GLY SEQRES 13 A 243 THR LEU LEU ALA ASN SER PHE GLY SER ILE LYS LYS ILE SEQRES 14 A 243 THR LEU ASP GLY GLY THR MSE THR ILE ASP ASN ALA HIS SEQRES 15 A 243 VAL VAL ALA TRP SER ARG GLU LEU ASP TYR ASP ILE HIS SEQRES 16 A 243 LEU GLU ASN GLY PHE MSE GLN SER ILE GLY THR GLY GLU SEQRES 17 A 243 GLY VAL VAL ASN THR PHE ARG GLY HIS GLY GLU ILE TYR SEQRES 18 A 243 ILE GLN SER LEU ASN LEU GLU GLN PHE ALA GLY THR LEU SEQRES 19 A 243 LYS ARG TYR LEU PRO THR SER SER ASN MODRES 1PG6 MSE A 6 MET SELENOMETHIONINE MODRES 1PG6 MSE A 14 MET SELENOMETHIONINE MODRES 1PG6 MSE A 36 MET SELENOMETHIONINE MODRES 1PG6 MSE A 67 MET SELENOMETHIONINE MODRES 1PG6 MSE A 73 MET SELENOMETHIONINE MODRES 1PG6 MSE A 79 MET SELENOMETHIONINE MODRES 1PG6 MSE A 124 MET SELENOMETHIONINE MODRES 1PG6 MSE A 143 MET SELENOMETHIONINE MODRES 1PG6 MSE A 169 MET SELENOMETHIONINE MODRES 1PG6 MSE A 194 MET SELENOMETHIONINE HET MSE A 6 8 HET MSE A 14 8 HET MSE A 36 8 HET MSE A 67 8 HET MSE A 73 8 HET MSE A 79 8 HET MSE A 124 8 HET MSE A 143 8 HET MSE A 169 8 HET MSE A 194 8 HET CA A 237 1 HET CA A 238 1 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 CA 2(CA 2+) FORMUL 4 HOH *182(H2 O) HELIX 1 1 LEU A 59 GLY A 70 1 12 HELIX 2 2 GLY A 192 GLY A 200 1 9 HELIX 3 3 ASN A 219 LYS A 228 1 10 HELIX 4 4 ARG A 229 LEU A 231 5 3 SHEET 1 A 4 ARG A 7 ILE A 10 0 SHEET 2 A 4 VAL A 19 LEU A 23 -1 O ASP A 22 N ARG A 7 SHEET 3 A 4 GLY A 84 LEU A 88 -1 O LEU A 86 N ILE A 21 SHEET 4 A 4 MSE A 36 HIS A 39 -1 N TYR A 38 O ALA A 87 SHEET 1 B 6 VAL A 43 ASN A 46 0 SHEET 2 B 6 ILE A 75 SER A 80 -1 O GLN A 77 N ASN A 46 SHEET 3 B 6 SER A 28 GLN A 32 -1 N LEU A 31 O THR A 76 SHEET 4 B 6 PHE A 113 ASP A 117 -1 O LEU A 116 N TYR A 30 SHEET 5 B 6 GLY A 149 ASN A 154 -1 O LEU A 152 N ALA A 115 SHEET 6 B 6 ILE A 96 LEU A 101 -1 N LEU A 101 O GLY A 149 SHEET 1 C 6 ILE A 159 ASP A 172 0 SHEET 2 C 6 VAL A 204 GLN A 216 -1 O PHE A 207 N MSE A 169 SHEET 3 C 6 VAL A 176 SER A 180 -1 N ALA A 178 O TYR A 214 SHEET 4 C 6 TYR A 106 ASN A 109 -1 N ARG A 107 O TRP A 179 SHEET 5 C 6 PHE A 141 GLU A 146 -1 O MSE A 143 N LEU A 108 SHEET 6 C 6 GLN A 121 ARG A 126 -1 N GLN A 121 O GLU A 146 SHEET 1 D 3 ILE A 159 ASP A 172 0 SHEET 2 D 3 VAL A 204 GLN A 216 -1 O PHE A 207 N MSE A 169 SHEET 3 D 3 ASP A 184 HIS A 188 -1 N ASP A 184 O ARG A 208 LINK C ARG A 5 N MSE A 6 1555 1555 1.33 LINK C MSE A 6 N ARG A 7 1555 1555 1.33 LINK C ASN A 13 N MSE A 14 1555 1555 1.33 LINK C MSE A 14 N GLN A 15 1555 1555 1.33 LINK C SER A 35 N MSE A 36 1555 1555 1.33 LINK C MSE A 36 N VAL A 37 1555 1555 1.33 LINK C SER A 66 N MSE A 67 1555 1555 1.33 LINK C MSE A 67 N VAL A 68 1555 1555 1.33 LINK C SER A 72 N MSE A 73 1555 1555 1.33 LINK C MSE A 73 N PHE A 74 1555 1555 1.33 LINK C ALA A 78 N MSE A 79 1555 1555 1.33 LINK C MSE A 79 N SER A 80 1555 1555 1.33 LINK C LYS A 123 N MSE A 124 1555 1555 1.33 LINK C MSE A 124 N GLU A 125 1555 1555 1.33 LINK C VAL A 142 N MSE A 143 1555 1555 1.33 LINK C MSE A 143 N THR A 144 1555 1555 1.33 LINK C THR A 168 N MSE A 169 1555 1555 1.33 LINK C MSE A 169 N THR A 170 1555 1555 1.33 LINK C PHE A 193 N MSE A 194 1555 1555 1.33 LINK C MSE A 194 N GLN A 195 1555 1555 1.33 LINK CA CA A 237 O THR A 92 1555 1555 2.54 LINK CA CA A 237 OG1 THR A 92 1555 1555 2.58 LINK CA CA A 237 O SER A 155 1555 1555 2.47 LINK CA CA A 237 O HOH A 305 1555 1555 2.50 LINK CA CA A 237 OD1 ASN A 154 1555 1555 2.68 LINK CA CA A 238 O HOH A 304 1555 1555 2.53 LINK CA CA A 238 O GLY A 34 1555 1555 2.49 LINK CA CA A 238 O MSE A 36 1555 1555 2.47 LINK CA CA A 238 O HOH A 302 1555 2655 2.48 LINK CA CA A 238 OD2 ASP A 172 1555 2655 2.45 LINK CA CA A 238 OE1 GLU A 201 1555 2655 2.64 LINK CA CA A 238 OE2 GLU A 201 1555 2655 2.62 SITE 1 AC1 5 PRO A 90 THR A 92 ASN A 154 SER A 155 SITE 2 AC1 5 HOH A 305 SITE 1 AC2 6 GLY A 34 MSE A 36 ASP A 172 GLU A 201 SITE 2 AC2 6 HOH A 302 HOH A 304 CRYST1 71.541 71.541 216.927 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013978 0.008070 0.000000 0.00000 SCALE2 0.000000 0.016140 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004610 0.00000