PDB Short entry for 1PHO HEADER OUTER MEMBRANE PROTEIN 15-JAN-93 1PHO TITLE CRYSTAL STRUCTURES EXPLAIN FUNCTIONAL PROPERTIES OF TWO E. COLI PORINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOPORIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562 KEYWDS OUTER MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.SCHIRMER,S.W.COWAN,J.N.JANSONIUS REVDAT 4 14-FEB-24 1PHO 1 REMARK REVDAT 3 13-JUL-11 1PHO 1 VERSN REVDAT 2 24-FEB-09 1PHO 1 VERSN REVDAT 1 31-OCT-93 1PHO 0 JRNL AUTH S.W.COWAN,T.SCHIRMER,G.RUMMEL,M.STEIERT,R.GHOSH,R.A.PAUPTIT, JRNL AUTH 2 J.N.JANSONIUS,J.P.ROSENBUSCH JRNL TITL CRYSTAL STRUCTURES EXPLAIN FUNCTIONAL PROPERTIES OF TWO E. JRNL TITL 2 COLI PORINS. JRNL REF NATURE V. 358 727 1992 JRNL REFN ISSN 0028-0836 JRNL PMID 1380671 JRNL DOI 10.1038/358727A0 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.A.PAUPTIT,H.ZHANG,G.RUMMEL,T.SCHIRMER,J.N.JANSONIUS, REMARK 1 AUTH 2 J.P.ROSENBUSCH REMARK 1 TITL TRIGONAL CRYSTALS OF PORIN FROM ESCHERICHIA COLI REMARK 1 REF J.MOL.BIOL. V. 218 505 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.A.PAUPTIT,T.SCHIRMER,J.N.JANSONIUS,J.P.ROSENBUSCH, REMARK 1 AUTH 2 M.W.PARKER,A.D.TUCKER,D.TSERNOGLOU,M.S.WEISS,G.E.SCHULZ REMARK 1 TITL A COMMON CHANNEL-FORMING MOTIF IN EVOLUTIONARILY DISTANT REMARK 1 TITL 2 PORINS REMARK 1 REF J.STRUCT.BIOL. V. 107 136 1991 REMARK 1 REFN ISSN 1047-8477 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2602 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.021 REMARK 3 BOND ANGLES (DEGREES) : 3.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 ATOMS THAT ARE NOT WELL DEFINED DUE TO POOR ELECTRON REMARK 3 DENSITY HAVE A WEIGHT OF ZERO. REMARK 3 REMARK 3 THE FOLLOWING RESIDUES COULD NOT BE MODELLED DUE TO REMARK 3 WEAK OR NONEXISTENT ELECTRON DENSITY AND ARE INCLUDED REMARK 3 IN THE MODEL IN AN ARBITRARY CONFORMATION ONLY FOR REMARK 3 CONVENIENCE: REMARK 3 25-33 REMARK 3 181-184 REMARK 3 198-199 REMARK 3 204 REMARK 3 249 REMARK 3 319-321 REMARK 4 REMARK 4 1PHO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175682. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 59.95000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 103.83645 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -59.95000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 103.83645 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ASN A 26 REMARK 475 ALA A 32 REMARK 475 SER A 33 REMARK 475 ASP A 181 REMARK 475 PHE A 182 REMARK 475 GLY A 183 REMARK 475 GLY A 183A REMARK 475 SER A 183B REMARK 475 ASP A 184 REMARK 475 ASN A 198 REMARK 475 GLU A 199 REMARK 475 SER A 204 REMARK 475 GLY A 249 REMARK 475 ASP A 319 REMARK 475 SER A 320 REMARK 475 ASP A 321 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 3 CD1 REMARK 480 LYS A 6 CE NZ REMARK 480 ASP A 7 OD1 OD2 REMARK 480 SER A 24 OG REMARK 480 ASP A 25 CA C O CB CG OD1 OD2 REMARK 480 LYS A 34 CG CD CE NZ REMARK 480 ILE A 41 CD1 REMARK 480 LYS A 46 CE NZ REMARK 480 GLU A 48 OE1 OE2 REMARK 480 ASP A 53 CG OD1 OD2 REMARK 480 GLN A 54 CD OE1 NE2 REMARK 480 LYS A 91 CG CD CE NZ REMARK 480 LEU A 93 CD1 CD2 REMARK 480 VAL A 147 CB CG1 CG2 REMARK 480 ASN A 163 CG OD1 ND2 REMARK 480 VAL A 166 CG1 CG2 REMARK 480 LYS A 167 CG CD CE NZ REMARK 480 SER A 188 OG REMARK 480 ASN A 193 CG OD1 ND2 REMARK 480 ASN A 201 OD1 ND2 REMARK 480 LEU A 202 CD1 CD2 REMARK 480 ARG A 210 CD NE CZ NH1 NH2 REMARK 480 LYS A 219 NZ REMARK 480 SER A 232 OG REMARK 480 ARG A 235 CD NE CZ NH1 NH2 REMARK 480 LYS A 253 NZ REMARK 480 ASP A 266 OD1 OD2 REMARK 480 ASP A 282 CG OD1 OD2 REMARK 480 GLU A 284 CG CD OE1 OE2 REMARK 480 ILE A 286 CD1 REMARK 480 GLU A 289 CG CD OE1 OE2 REMARK 480 LYS A 305 CD CE NZ REMARK 480 LYS A 323 CE NZ REMARK 480 ASN A 325 CG OD1 ND2 REMARK 480 ILE A 326 CD1 REMARK 480 ASN A 327 OD1 ND2 REMARK 480 ASN A 328 OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 4 CB - CG - CD2 ANGL. DEV. = 3.6 DEGREES REMARK 500 TYR A 4 CB - CG - CD1 ANGL. DEV. = -5.2 DEGREES REMARK 500 VAL A 13 CG1 - CB - CG2 ANGL. DEV. = -11.7 DEGREES REMARK 500 MET A 20 CG - SD - CE ANGL. DEV. = -13.6 DEGREES REMARK 500 ARG A 42 CA - CB - CG ANGL. DEV. = -16.4 DEGREES REMARK 500 LEU A 55 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 TYR A 58 CB - CG - CD2 ANGL. DEV. = 4.6 DEGREES REMARK 500 TYR A 58 CB - CG - CD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP A 61 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP A 61 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 ALA A 70 CA - C - N ANGL. DEV. = 13.6 DEGREES REMARK 500 LYS A 80 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 ARG A 82 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 82 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 LYS A 91 CA - C - O ANGL. DEV. = 12.8 DEGREES REMARK 500 LYS A 91 CA - C - N ANGL. DEV. = -19.7 DEGREES REMARK 500 ASP A 92 CA - C - O ANGL. DEV. = -13.9 DEGREES REMARK 500 ARG A 100 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 TRP A 111 NE1 - CE2 - CZ2 ANGL. DEV. = -6.7 DEGREES REMARK 500 TRP A 111 NE1 - CE2 - CD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 MET A 114 CA - CB - CG ANGL. DEV. = 10.3 DEGREES REMARK 500 PHE A 128 CA - C - N ANGL. DEV. = 16.5 DEGREES REMARK 500 THR A 130 N - CA - CB ANGL. DEV. = -11.8 DEGREES REMARK 500 GLY A 146 CA - C - N ANGL. DEV. = -14.4 DEGREES REMARK 500 TYR A 180 CB - CG - CD1 ANGL. DEV. = -5.2 DEGREES REMARK 500 TYR A 191 CB - CG - CD1 ANGL. DEV. = -5.1 DEGREES REMARK 500 SER A 194 CA - C - N ANGL. DEV. = 13.8 DEGREES REMARK 500 THR A 197 N - CA - CB ANGL. DEV. = -13.2 DEGREES REMARK 500 TRP A 214 CD1 - CG - CD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 TRP A 214 CG - CD1 - NE1 ANGL. DEV. = -7.2 DEGREES REMARK 500 TRP A 214 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 ASN A 223 CA - C - N ANGL. DEV. = -15.5 DEGREES REMARK 500 VAL A 260 CG1 - CB - CG2 ANGL. DEV. = -18.1 DEGREES REMARK 500 ASN A 304 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 TYR A 313 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASN A 316 O - C - N ANGL. DEV. = 10.3 DEGREES REMARK 500 ASN A 327 CA - C - N ANGL. DEV. = -14.6 DEGREES REMARK 500 ASN A 327 O - C - N ANGL. DEV. = 10.5 DEGREES REMARK 500 MET A 336 CB - CG - SD ANGL. DEV. = -24.4 DEGREES REMARK 500 MET A 336 CG - SD - CE ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 2 84.73 -60.83 REMARK 500 SER A 24 -171.55 172.78 REMARK 500 ASN A 26 44.32 -83.66 REMARK 500 ALA A 32 -70.23 -69.97 REMARK 500 LYS A 34 -176.95 52.57 REMARK 500 GLN A 38 46.62 -141.01 REMARK 500 LYS A 46 127.96 -170.19 REMARK 500 ILE A 51 -79.37 -67.14 REMARK 500 THR A 74 4.59 -64.20 REMARK 500 GLN A 78 -34.40 -131.43 REMARK 500 ALA A 86 131.61 -175.54 REMARK 500 ASP A 92 -63.39 76.61 REMARK 500 LEU A 93 -16.33 -37.30 REMARK 500 VAL A 108 -62.94 -102.40 REMARK 500 ASP A 113 40.22 -96.67 REMARK 500 GLU A 117 -52.50 -148.59 REMARK 500 PHE A 118 -176.97 -69.82 REMARK 500 SER A 121A -92.57 -91.55 REMARK 500 PHE A 128 93.39 -2.45 REMARK 500 MET A 129 -3.41 59.63 REMARK 500 LYS A 131 -110.14 -131.82 REMARK 500 ALA A 133 139.99 -170.43 REMARK 500 PHE A 144 136.93 55.85 REMARK 500 VAL A 147 62.76 33.31 REMARK 500 ILE A 148 56.38 -97.31 REMARK 500 ARG A 164 172.79 -29.80 REMARK 500 SER A 183B -91.25 -130.36 REMARK 500 ASN A 223 54.20 36.62 REMARK 500 ASN A 224 -9.40 73.98 REMARK 500 PHE A 250 127.32 -25.09 REMARK 500 GLU A 284 32.62 -63.74 REMARK 500 ALA A 299 140.47 -170.36 REMARK 500 ASN A 304 -165.09 -177.61 REMARK 500 ILE A 326 -150.25 -80.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 220 0.11 SIDE CHAIN REMARK 500 TYR A 338 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THESE COORDINATES ARE IN AN INTERMEDIATE STAGE OF REMARK 999 REFINEMENT AND WILL BE UPDATED SOON. REMARK 999 REMARK 999 THE RESIDUE NUMBERING IS BASED ON THE HOMOLOGOUS MATRIX REMARK 999 PORIN (OMPF). CONSEQUENTLY, THERE ARE GAPS IN THE NUMBERING REMARK 999 (27-31,75-76,242-247) AND INSERTIONS (121A,183A AND 183B). DBREF 1PHO A 1 340 UNP P02932 PHOE_ECOLI 22 351 SEQRES 1 A 330 ALA GLU ILE TYR ASN LYS ASP GLY ASN LYS LEU ASP VAL SEQRES 2 A 330 TYR GLY LYS VAL LYS ALA MET HIS TYR MET SER ASP ASN SEQRES 3 A 330 ALA SER LYS ASP GLY ASP GLN SER TYR ILE ARG PHE GLY SEQRES 4 A 330 PHE LYS GLY GLU THR GLN ILE ASN ASP GLN LEU THR GLY SEQRES 5 A 330 TYR GLY ARG TRP GLU ALA GLU PHE ALA GLY ASN LYS ALA SEQRES 6 A 330 GLU SER ASP THR ALA GLN GLN LYS THR ARG LEU ALA PHE SEQRES 7 A 330 ALA GLY LEU LYS TYR LYS ASP LEU GLY SER PHE ASP TYR SEQRES 8 A 330 GLY ARG ASN LEU GLY ALA LEU TYR ASP VAL GLU ALA TRP SEQRES 9 A 330 THR ASP MET PHE PRO GLU PHE GLY GLY ASP SER SER ALA SEQRES 10 A 330 GLN THR ASP ASN PHE MET THR LYS ARG ALA SER GLY LEU SEQRES 11 A 330 ALA THR TYR ARG ASN THR ASP PHE PHE GLY VAL ILE ASP SEQRES 12 A 330 GLY LEU ASN LEU THR LEU GLN TYR GLN GLY LYS ASN GLU SEQRES 13 A 330 ASN ARG ASP VAL LYS LYS GLN ASN GLY ASP GLY PHE GLY SEQRES 14 A 330 THR SER LEU THR TYR ASP PHE GLY GLY SER ASP PHE ALA SEQRES 15 A 330 ILE SER GLY ALA TYR THR ASN SER ASP ARG THR ASN GLU SEQRES 16 A 330 GLN ASN LEU GLN SER ARG GLY THR GLY LYS ARG ALA GLU SEQRES 17 A 330 ALA TRP ALA THR GLY LEU LYS TYR ASP ALA ASN ASN ILE SEQRES 18 A 330 TYR LEU ALA THR PHE TYR SER GLU THR ARG LYS MET THR SEQRES 19 A 330 PRO ILE THR GLY GLY PHE ALA ASN LYS THR GLN ASN PHE SEQRES 20 A 330 GLU ALA VAL ALA GLN TYR GLN PHE ASP PHE GLY LEU ARG SEQRES 21 A 330 PRO SER LEU GLY TYR VAL LEU SER LYS GLY LYS ASP ILE SEQRES 22 A 330 GLU GLY ILE GLY ASP GLU ASP LEU VAL ASN TYR ILE ASP SEQRES 23 A 330 VAL GLY ALA THR TYR TYR PHE ASN LYS ASN MET SER ALA SEQRES 24 A 330 PHE VAL ASP TYR LYS ILE ASN GLN LEU ASP SER ASP ASN SEQRES 25 A 330 LYS LEU ASN ILE ASN ASN ASP ASP ILE VAL ALA VAL GLY SEQRES 26 A 330 MET THR TYR GLN PHE HELIX 1 1 LEU A 105 ALA A 110 1 6 HELIX 2 2 THR A 197 ASN A 201 5 5 SHEET 1 A19 TYR A 4 ASN A 5 0 SHEET 2 A19 GLY A 36 ASP A 37 0 SHEET 3 A19 TYR A 40 THR A 49 0 SHEET 4 A19 LEU A 55 ALA A 66 -1 O GLY A 57 N THR A 49 SHEET 5 A19 GLN A 79 TYR A 90 -1 O ARG A 82 N GLU A 62 SHEET 6 A19 GLY A 94 LEU A 102 -1 O PHE A 96 N LEU A 88 SHEET 7 A19 ARG A 132 THR A 142 -1 O ALA A 133 N ASN A 101 SHEET 8 A19 LEU A 151 GLN A 158 -1 O LEU A 155 N TYR A 139 SHEET 9 A19 GLY A 173 PHE A 182 -1 O GLY A 175 N GLN A 156 SHEET 10 A19 PHE A 185 ASP A 195 -1 O TYR A 191 N THR A 176 SHEET 11 A19 ARG A 210 ALA A 222 -1 O LYS A 219 N ALA A 186 SHEET 12 A19 ILE A 225 ARG A 235 -1 O ARG A 235 N GLU A 212 SHEET 13 A19 LYS A 253 TYR A 263 -1 O GLN A 262 N TYR A 226 SHEET 14 A19 LEU A 269 LYS A 281 -1 O LEU A 273 N ALA A 261 SHEET 15 A19 ASP A 290 TYR A 302 -1 O TYR A 294 N VAL A 276 SHEET 16 A19 MET A 307 ASN A 316 -1 O ILE A 315 N ILE A 295 SHEET 17 A19 ILE A 331 PHE A 340 -1 O ALA A 333 N ASP A 312 SHEET 18 A19 LYS A 10 SER A 24 -1 N VAL A 17 O TYR A 338 SHEET 19 A19 GLY A 36 ASP A 37 -1 O GLY A 36 N TYR A 22 CRYST1 119.900 119.900 51.900 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008340 0.004815 0.000000 0.00000 SCALE2 0.000000 0.009631 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019268 0.00000