PDB Short entry for 1PHP HEADER KINASE 12-APR-94 1PHP TITLE STRUCTURE OF THE ADP COMPLEX OF THE 3-PHOSPHOGLYCERATE KINASE FROM TITLE 2 BACILLUS STEAROTHERMOPHILUS AT 1.65 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-PHOSPHOGLYCERATE KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.2.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422 KEYWDS KINASE EXPDTA X-RAY DIFFRACTION AUTHOR G.J.DAVIES,H.C.WATSON REVDAT 5 14-FEB-24 1PHP 1 REMARK LINK REVDAT 4 14-AUG-19 1PHP 1 REMARK REVDAT 3 17-JUL-19 1PHP 1 REMARK REVDAT 2 24-FEB-09 1PHP 1 VERSN REVDAT 1 22-JUN-94 1PHP 0 JRNL AUTH G.J.DAVIES,S.J.GAMBLIN,J.A.LITTLECHILD,Z.DAUTER,K.S.WILSON, JRNL AUTH 2 H.C.WATSON JRNL TITL STRUCTURE OF THE ADP COMPLEX OF THE 3-PHOSPHOGLYCERATE JRNL TITL 2 KINASE FROM BACILLUS STEAROTHERMOPHILUS AT 1.65 A. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 50 202 1994 JRNL REFN ISSN 0907-4449 JRNL PMID 15299460 JRNL DOI 10.1107/S0907444993011138 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.J.DAVIES,S.J.GAMBLIN,J.A.LITTLECHILD,H.C.WATSON REMARK 1 TITL THE STRUCTURE OF A THERMALLY STABLE 3-PHOSPHOGLYCERATE REMARK 1 TITL 2 KINASE AND A COMPARISON WITH ITS MESOPHILIC EQUIVALENT REMARK 1 REF PROTEINS V. 15 283 1993 REMARK 1 REFN ISSN 0887-3585 REMARK 1 REFERENCE 2 REMARK 1 AUTH G.J.DAVIES,S.J.GAMBLIN,J.A.LITTLECHILD,H.C.WATSON REMARK 1 TITL PURIFICATION, CRYSTALLISATION AND PRELIMINARY X-RAY ANALYSIS REMARK 1 TITL 2 OF THE 3-PHOSPHOGLYCERATE KINASE FROM BACILLUS REMARK 1 TITL 3 STEAROTHERMOPHILUS REMARK 1 REF J.MOL.BIOL. V. 227 1263 1992 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH G.J.DAVIES,J.A.LITTLECHILD,H.C.WATSON,L.HALL REMARK 1 TITL SEQUENCE AND EXPRESSION OF THE GENE ENCODING REMARK 1 TITL 2 3-PHOSPHOGLYCERATE KINASE FROM BACILLUS STEAROTHERMOPHILUS REMARK 1 REF GENE V. 109 39 1991 REMARK 1 REFN ISSN 0378-1119 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 44754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3008 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 634 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.300 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.156 ; 4.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.907 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.826 ; 6.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PHP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175683. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.96500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 448 O HOH A 738 1.89 REMARK 500 O HOH A 633 O HOH A 660 1.92 REMARK 500 OD2 ASP A 21 O HOH A 563 2.01 REMARK 500 O HOH A 614 O HOH A 905 2.06 REMARK 500 O HOH A 418 O HOH A 671 2.07 REMARK 500 OE1 GLU A 239 O HOH A 700 2.07 REMARK 500 O HOH A 468 O HOH A 985 2.07 REMARK 500 O HOH A 589 O HOH A 664 2.09 REMARK 500 O HOH A 445 O HOH A 898 2.10 REMARK 500 O HOH A 815 O HOH A 826 2.13 REMARK 500 O HOH A 563 O HOH A 984 2.14 REMARK 500 O HOH A 631 O HOH A 754 2.15 REMARK 500 O HOH A 619 O HOH A 661 2.15 REMARK 500 O HOH A 617 O HOH A 898 2.16 REMARK 500 O HOH A 453 O HOH A 1010 2.17 REMARK 500 O HOH A 845 O HOH A 868 2.17 REMARK 500 O HOH A 600 O HOH A 767 2.18 REMARK 500 O HOH A 646 O HOH A 756 2.18 REMARK 500 O HOH A 667 O HOH A 739 2.18 REMARK 500 O HOH A 481 O HOH A 779 2.18 REMARK 500 OD1 ASP A 97 O HOH A 603 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 742 O HOH A 813 2846 2.07 REMARK 500 O HOH A 716 O HOH A 953 2856 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 239 CD GLU A 239 OE1 -0.078 REMARK 500 GLU A 381 CD GLU A 381 OE2 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 7 CD - NE - CZ ANGL. DEV. = 29.0 DEGREES REMARK 500 ARG A 7 NE - CZ - NH1 ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG A 7 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP A 10 CB - CG - OD1 ANGL. DEV. = 8.4 DEGREES REMARK 500 ASP A 10 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG A 12 NH1 - CZ - NH2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 12 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 12 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 15 NE - CZ - NH2 ANGL. DEV. = 5.3 DEGREES REMARK 500 CYS A 18 CA - CB - SG ANGL. DEV. = 7.4 DEGREES REMARK 500 CYS A 18 O - C - N ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 PHE A 22 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 GLU A 27 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 GLU A 27 N - CA - CB ANGL. DEV. = 16.3 DEGREES REMARK 500 ASP A 33 CB - CG - OD1 ANGL. DEV. = 9.3 DEGREES REMARK 500 ASP A 34 CB - CG - OD1 ANGL. DEV. = 8.7 DEGREES REMARK 500 ASP A 34 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG A 38 CD - NE - CZ ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG A 38 NE - CZ - NH1 ANGL. DEV. = 8.3 DEGREES REMARK 500 ARG A 38 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 45 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 45 NE - CZ - NH2 ANGL. DEV. = -8.4 DEGREES REMARK 500 GLU A 49 OE1 - CD - OE2 ANGL. DEV. = 10.1 DEGREES REMARK 500 LEU A 60 CB - CG - CD2 ANGL. DEV. = 13.3 DEGREES REMARK 500 ARG A 62 CD - NE - CZ ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG A 62 NH1 - CZ - NH2 ANGL. DEV. = -8.9 DEGREES REMARK 500 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG A 62 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 86 N - CA - CB ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG A 86 CD - NE - CZ ANGL. DEV. = -11.1 DEGREES REMARK 500 ASP A 97 OD1 - CG - OD2 ANGL. DEV. = 17.6 DEGREES REMARK 500 ASP A 97 CB - CG - OD1 ANGL. DEV. = -8.8 DEGREES REMARK 500 ASP A 97 CB - CG - OD2 ANGL. DEV. = -8.8 DEGREES REMARK 500 ASP A 104 CB - CG - OD1 ANGL. DEV. = -8.1 DEGREES REMARK 500 ARG A 105 N - CA - CB ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG A 105 CD - NE - CZ ANGL. DEV. = 21.5 DEGREES REMARK 500 ARG A 105 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 GLU A 108 CG - CD - OE1 ANGL. DEV. = 14.7 DEGREES REMARK 500 GLU A 115 CG - CD - OE1 ANGL. DEV. = 12.1 DEGREES REMARK 500 ARG A 118 CD - NE - CZ ANGL. DEV. = -8.9 DEGREES REMARK 500 TYR A 120 CB - CG - CD1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP A 127 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 GLU A 136 CG - CD - OE1 ANGL. DEV. = 13.1 DEGREES REMARK 500 GLU A 136 CG - CD - OE2 ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG A 151 NE - CZ - NH1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG A 151 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ALA A 165 N - CA - CB ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG A 187 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 LYS A 211 CB - CG - CD ANGL. DEV. = 16.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 68 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 2 19.28 55.71 REMARK 500 ALA A 145 77.71 -119.66 REMARK 500 GLU A 157 -52.17 -149.33 REMARK 500 ALA A 285 41.83 -143.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 395 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 352 OD2 REMARK 620 2 ADP A 396 O2B 95.2 REMARK 620 3 ADP A 396 O1A 94.2 92.9 REMARK 620 4 HOH A1021 O 168.7 96.0 86.5 REMARK 620 5 HOH A1022 O 89.7 174.9 88.1 79.0 REMARK 620 6 HOH A1023 O 89.2 88.1 176.3 89.9 90.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 395 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 396 DBREF 1PHP A 1 394 UNP P18912 PGK_BACST 1 394 SEQRES 1 A 394 MET ASN LYS LYS THR ILE ARG ASP VAL ASP VAL ARG GLY SEQRES 2 A 394 LYS ARG VAL PHE CYS ARG VAL ASP PHE ASN VAL PRO MET SEQRES 3 A 394 GLU GLN GLY ALA ILE THR ASP ASP THR ARG ILE ARG ALA SEQRES 4 A 394 ALA LEU PRO THR ILE ARG TYR LEU ILE GLU HIS GLY ALA SEQRES 5 A 394 LYS VAL ILE LEU ALA SER HIS LEU GLY ARG PRO LYS GLY SEQRES 6 A 394 LYS VAL VAL GLU GLU LEU ARG LEU ASP ALA VAL ALA LYS SEQRES 7 A 394 ARG LEU GLY GLU LEU LEU GLU ARG PRO VAL ALA LYS THR SEQRES 8 A 394 ASN GLU ALA VAL GLY ASP GLU VAL LYS ALA ALA VAL ASP SEQRES 9 A 394 ARG LEU ASN GLU GLY ASP VAL LEU LEU LEU GLU ASN VAL SEQRES 10 A 394 ARG PHE TYR PRO GLY GLU GLU LYS ASN ASP PRO GLU LEU SEQRES 11 A 394 ALA LYS ALA PHE ALA GLU LEU ALA ASP LEU TYR VAL ASN SEQRES 12 A 394 ASP ALA PHE GLY ALA ALA HIS ARG ALA HIS ALA SER THR SEQRES 13 A 394 GLU GLY ILE ALA HIS TYR LEU PRO ALA VAL ALA GLY PHE SEQRES 14 A 394 LEU MET GLU LYS GLU LEU GLU VAL LEU GLY LYS ALA LEU SEQRES 15 A 394 SER ASN PRO ASP ARG PRO PHE THR ALA ILE ILE GLY GLY SEQRES 16 A 394 ALA LYS VAL LYS ASP LYS ILE GLY VAL ILE ASP ASN LEU SEQRES 17 A 394 LEU GLU LYS VAL ASP ASN LEU ILE ILE GLY GLY GLY LEU SEQRES 18 A 394 ALA TYR THR PHE VAL LYS ALA LEU GLY HIS ASP VAL GLY SEQRES 19 A 394 LYS SER LEU LEU GLU GLU ASP LYS ILE GLU LEU ALA LYS SEQRES 20 A 394 SER PHE MET GLU LYS ALA LYS GLU LYS GLY VAL ARG PHE SEQRES 21 A 394 TYR MET PRO VAL ASP VAL VAL VAL ALA ASP ARG PHE ALA SEQRES 22 A 394 ASN ASP ALA ASN THR LYS VAL VAL PRO ILE ASP ALA ILE SEQRES 23 A 394 PRO ALA ASP TRP SER ALA LEU ASP ILE GLY PRO LYS THR SEQRES 24 A 394 ARG GLU LEU TYR ARG ASP VAL ILE ARG GLU SER LYS LEU SEQRES 25 A 394 VAL VAL TRP ASN GLY PRO MET GLY VAL PHE GLU MET ASP SEQRES 26 A 394 ALA PHE ALA HIS GLY THR LYS ALA ILE ALA GLU ALA LEU SEQRES 27 A 394 ALA GLU ALA LEU ASP THR TYR SER VAL ILE GLY GLY GLY SEQRES 28 A 394 ASP SER ALA ALA ALA VAL GLU LYS PHE GLY LEU ALA ASP SEQRES 29 A 394 LYS MET ASP HIS ILE SER THR GLY GLY GLY ALA SER LEU SEQRES 30 A 394 GLU PHE MET GLU GLY LYS GLN LEU PRO GLY VAL VAL ALA SEQRES 31 A 394 LEU GLU ASP LYS HET MG A 395 1 HET ADP A 396 27 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 HOH *634(H2 O) HELIX 1 1 ILE A 6 VAL A 9 5 4 HELIX 2 2 ASP A 34 HIS A 50 1 17 HELIX 3 3 VAL A 68 ARG A 72 5 5 HELIX 4 4 LEU A 73 GLU A 85 1 13 HELIX 5 5 GLY A 96 ARG A 105 1 10 HELIX 6 6 ASN A 116 TYR A 120 5 5 HELIX 7 7 PRO A 121 ASN A 126 1 6 HELIX 8 8 ASP A 127 GLU A 136 1 10 HELIX 9 9 ALA A 145 ALA A 149 5 5 HELIX 10 10 GLU A 157 TYR A 162 5 6 HELIX 11 11 GLY A 168 ASN A 184 1 17 HELIX 12 12 LYS A 197 ILE A 202 1 6 HELIX 13 13 LYS A 201 LEU A 209 1 9 HELIX 14 14 GLY A 220 LEU A 229 1 10 HELIX 15 15 GLU A 239 ASP A 241 5 3 HELIX 16 16 LYS A 242 GLY A 257 1 16 HELIX 17 17 ASP A 284 ILE A 286 5 3 HELIX 18 18 GLY A 296 GLU A 309 1 14 HELIX 19 19 MET A 324 PHE A 327 5 4 HELIX 20 20 ALA A 328 ALA A 341 1 14 HELIX 21 21 GLY A 350 PHE A 360 1 11 HELIX 22 22 LEU A 362 MET A 366 5 5 HELIX 23 23 GLY A 373 GLU A 381 1 9 HELIX 24 24 LEU A 385 ALA A 390 1 6 SHEET 1 A 6 ALA A 89 LYS A 90 0 SHEET 2 A 6 VAL A 111 LEU A 113 1 O VAL A 111 N ALA A 89 SHEET 3 A 6 LYS A 53 ALA A 57 1 O VAL A 54 N LEU A 112 SHEET 4 A 6 ARG A 15 ARG A 19 1 O VAL A 16 N ILE A 55 SHEET 5 A 6 LEU A 140 ASN A 143 1 O LEU A 140 N PHE A 17 SHEET 6 A 6 ALA A 165 ALA A 167 1 O VAL A 166 N ASN A 143 SHEET 1 B 2 MET A 26 GLU A 27 0 SHEET 2 B 2 ALA A 30 ILE A 31 -1 O ALA A 30 N GLU A 27 SHEET 1 C 6 ARG A 259 TYR A 261 0 SHEET 2 C 6 ASN A 214 ILE A 217 1 N LEU A 215 O ARG A 259 SHEET 3 C 6 PHE A 189 ILE A 193 1 O PHE A 189 N ASN A 214 SHEET 4 C 6 LEU A 312 ASN A 316 1 O LEU A 312 N THR A 190 SHEET 5 C 6 TYR A 345 ILE A 348 1 O TYR A 345 N VAL A 313 SHEET 6 C 6 HIS A 368 ILE A 369 1 O HIS A 368 N ILE A 348 SHEET 1 D 3 THR A 278 PRO A 282 0 SHEET 2 D 3 ASP A 265 ALA A 269 -1 N VAL A 266 O VAL A 281 SHEET 3 D 3 SER A 291 ILE A 295 -1 O SER A 291 N ALA A 269 LINK OD2 ASP A 352 MG MG A 395 1555 1555 1.97 LINK MG MG A 395 O2B ADP A 396 1555 1555 2.19 LINK MG MG A 395 O1A ADP A 396 1555 1555 2.22 LINK MG MG A 395 O HOH A1021 1555 1555 2.28 LINK MG MG A 395 O HOH A1022 1555 1555 2.19 LINK MG MG A 395 O HOH A1023 1555 1555 2.31 CISPEP 1 ARG A 187 PRO A 188 0 2.22 SITE 1 AC1 5 ASP A 352 ADP A 396 HOH A1021 HOH A1022 SITE 2 AC1 5 HOH A1023 SITE 1 AC2 25 GLY A 195 ALA A 196 LYS A 201 GLY A 219 SITE 2 AC2 25 GLY A 220 LEU A 237 ALA A 292 LEU A 293 SITE 3 AC2 25 ASN A 316 PRO A 318 GLY A 320 VAL A 321 SITE 4 AC2 25 GLU A 323 GLY A 350 GLY A 351 ASP A 352 SITE 5 AC2 25 SER A 353 MG A 395 HOH A 458 HOH A 465 SITE 6 AC2 25 HOH A 477 HOH A1021 HOH A1022 HOH A1024 SITE 7 AC2 25 HOH A1025 CRYST1 40.410 73.930 68.570 90.00 99.80 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024746 0.000000 0.004274 0.00000 SCALE2 0.000000 0.013526 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014800 0.00000