PDB Full entry for 1PJE
HEADER    VIRAL PROTEIN                           02-JUN-03   1PJE              
TITLE     STRUCTURE OF THE CHANNEL-FORMING TRANS-MEMBRANE DOMAIN OF VIRUS       
TITLE    2 PROTEIN "U"(VPU) FROM HIV-1                                          
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: VPU PROTEIN;                                               
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: TRANS-MEMBRANE DOMAIN;                                     
COMPND   5 SYNONYM: U ORF PROTEIN;                                              
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1;                 
SOURCE   3 ORGANISM_TAXID: 11676;                                               
SOURCE   4 GENE: VPU;                                                           
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BLR(DE3)PLYSS;                             
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PET-31B(+)                                
KEYWDS    ALPHA-HELIX, VIRAL PROTEIN                                            
EXPDTA    SOLID-STATE NMR                                                       
AUTHOR    S.H.PARK,A.A.MRSE,A.A.NEVZOROV,M.F.MESLEH,M.OBLATT-MONTAL,M.MONTAL,   
AUTHOR   2 S.J.OPELLA                                                           
REVDAT   3   27-OCT-21 1PJE    1       REMARK SEQADV                            
REVDAT   2   24-FEB-09 1PJE    1       VERSN                                    
REVDAT   1   14-OCT-03 1PJE    0                                                
JRNL        AUTH   S.H.PARK,A.A.MRSE,A.A.NEVZOROV,M.F.MESLEH,M.OBLATT-MONTAL,   
JRNL        AUTH 2 M.MONTAL,S.J.OPELLA                                          
JRNL        TITL   THREE-DIMENSIONAL STRUCTURE OF THE CHANNEL-FORMING           
JRNL        TITL 2 TRANS-MEMBRANE DOMAIN OF VIRUS PROTEIN "U" (VPU) FROM HIV-1  
JRNL        REF    J.MOL.BIOL.                   V. 333   409 2003              
JRNL        REFN                   ISSN 0022-2836                               
JRNL        PMID   14529626                                                     
JRNL        DOI    10.1016/J.JMB.2003.08.048                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : NMRPIPE 2.1, STRUCTURAL FITTING 1.0                  
REMARK   3   AUTHORS     : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER, BAX       
REMARK   3                 (NMRPIPE), NEVZOROV, OPELLA (STRUCTURAL FITTING)     
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: THIS STRUCTURE WAS CALCULATED BY USING    
REMARK   3  A STRUCTURAL FITTING ALGORITHM THAT FINDS TORSION ANGLES BETWEEN    
REMARK   3  CONSECUTIVE RESIDUES BASED ON THEIR NMR FREQUENCIES                 
REMARK   4                                                                      
REMARK   4 1PJE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-03.                  
REMARK 100 THE DEPOSITION ID IS D_1000019359.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 293                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : NULL                               
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : COMPLETELY ALIGNED SAMPLE IN       
REMARK 210                                   GLASS PLATES: 3.5 MG VPU2-30+ U-   
REMARK 210                                   15N, 75 MG LIPID MIXTURE (DOPC:    
REMARK 210                                   DOPG, 9:1)                         
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : PISEMA                             
REMARK 210  SPECTROMETER FIELD STRENGTH    : 700 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : STRUCTURAL FITTING 1.0             
REMARK 210   METHOD USED                   : DIRECT STRUCTURAL FITTING OF 2D    
REMARK 210                                   SOLID-STATE NMR DATA               
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 1                                  
REMARK 210 CONFORMERS, SELECTION CRITERIA  : MINIMIZED AVERAGE STRUCTURE        
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: PISEMA: POLARIZATION INVERSION SPIN EXCHANGE AT THE MAGIC    
REMARK 210  ANGLE                                                               
REMARK 217                                                                      
REMARK 217 SOLID STATE NMR STUDY                                                
REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID              
REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT           
REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 217 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                   
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                            
REMARK 465     RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 465     GLN A     2                                                      
REMARK 465     PRO A     3                                                      
REMARK 465     ILE A     4                                                      
REMARK 465     GLN A     5                                                      
REMARK 465     ILE A     6                                                      
REMARK 465     ILE A    26                                                      
REMARK 465     ILE A    27                                                      
REMARK 465     GLU A    28                                                      
REMARK 465     GLY A    29                                                      
REMARK 465     ARG A    30                                                      
REMARK 465     GLY A    31                                                      
REMARK 465     GLY A    32                                                      
REMARK 465     LYS A    33                                                      
REMARK 465     LYS A    34                                                      
REMARK 465     LYS A    35                                                      
REMARK 465     LYS A    36                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    LEU A    11     H    ILE A    15              1.38            
REMARK 500   O    ALA A    18     H    TRP A    22              1.46            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1PI8   RELATED DB: PDB                                   
REMARK 900 STRUCTURE OF THE CHANNEL-FORMING TRANS-MEMBRANE DOMAIN OF VIRUS      
REMARK 900 PROTEIN "U" (VPU) FROM HIV-1-NMR, 4 STRUCTURES                       
DBREF  1PJE A    1    30  UNP    Q70625   VPU_HV1LW        1     30             
SEQADV 1PJE GLY A   29  UNP  Q70625    TYR    29 ENGINEERED MUTATION            
SEQADV 1PJE GLY A   31  UNP  Q70625              CLONING ARTIFACT               
SEQADV 1PJE GLY A   32  UNP  Q70625              CLONING ARTIFACT               
SEQADV 1PJE LYS A   33  UNP  Q70625              CLONING ARTIFACT               
SEQADV 1PJE LYS A   34  UNP  Q70625              CLONING ARTIFACT               
SEQADV 1PJE LYS A   35  UNP  Q70625              CLONING ARTIFACT               
SEQADV 1PJE LYS A   36  UNP  Q70625              CLONING ARTIFACT               
SEQRES   1 A   36  MET GLN PRO ILE GLN ILE ALA ILE VAL ALA LEU VAL VAL          
SEQRES   2 A   36  ALA ILE ILE ILE ALA ILE VAL VAL TRP SER ILE VAL ILE          
SEQRES   3 A   36  ILE GLU GLY ARG GLY GLY LYS LYS LYS LYS                      
HELIX    1   1 ILE A    8  VAL A   25  1                                  18    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
ATOM      1  CA  ALA A   7      -5.958  11.763   1.211  1.00  0.00           C  
ATOM      2  C   ALA A   7      -5.441  10.748   0.206  1.00  0.00           C  
ATOM      3  O   ALA A   7      -5.994   9.660   0.066  1.00  0.00           O  
ATOM      4  N   ILE A   8      -4.372  11.123  -0.491  1.00  0.00           N  
ATOM      5  CA  ILE A   8      -3.757  10.268  -1.489  1.00  0.00           C  
ATOM      6  C   ILE A   8      -2.467   9.669  -0.955  1.00  0.00           C  
ATOM      7  O   ILE A   8      -2.131   8.525  -1.255  1.00  0.00           O  
ATOM      8  H   ILE A   8      -3.964  12.033  -0.328  1.00  0.00           H  
ATOM      9  N   VAL A   9      -1.752  10.460  -0.159  1.00  0.00           N  
ATOM     10  CA  VAL A   9      -0.498  10.035   0.430  1.00  0.00           C  
ATOM     11  C   VAL A   9      -0.724   8.873   1.384  1.00  0.00           C  
ATOM     12  O   VAL A   9      -0.025   7.864   1.326  1.00  0.00           O  
ATOM     13  H   VAL A   9      -2.085  11.390   0.048  1.00  0.00           H  
ATOM     14  N   ALA A  10      -1.711   9.034   2.261  1.00  0.00           N  
ATOM     15  CA  ALA A  10      -2.053   8.018   3.237  1.00  0.00           C  
ATOM     16  C   ALA A  10      -2.464   6.729   2.544  1.00  0.00           C  
ATOM     17  O   ALA A  10      -1.880   5.673   2.777  1.00  0.00           O  
ATOM     18  H   ALA A  10      -2.247   9.890   2.256  1.00  0.00           H  
ATOM     19  N   LEU A  11      -3.477   6.835   1.690  1.00  0.00           N  
ATOM     20  CA  LEU A  11      -3.988   5.698   0.950  1.00  0.00           C  
ATOM     21  C   LEU A  11      -2.886   5.069   0.114  1.00  0.00           C  
ATOM     22  O   LEU A  11      -2.593   3.883   0.247  1.00  0.00           O  
ATOM     23  H   LEU A  11      -3.914   7.734   1.545  1.00  0.00           H  
ATOM     24  N   VAL A  12      -2.282   5.882  -0.748  1.00  0.00           N  
ATOM     25  CA  VAL A  12      -1.211   5.434  -1.617  1.00  0.00           C  
ATOM     26  C   VAL A  12      -0.135   4.724  -0.812  1.00  0.00           C  
ATOM     27  O   VAL A  12       0.273   3.614  -1.145  1.00  0.00           O  
ATOM     28  H   VAL A  12      -2.572   6.848  -0.808  1.00  0.00           H  
ATOM     29  N   VAL A  13       0.316   5.384   0.251  1.00  0.00           N  
ATOM     30  CA  VAL A  13       1.343   4.843   1.120  1.00  0.00           C  
ATOM     31  C   VAL A  13       0.884   3.530   1.733  1.00  0.00           C  
ATOM     32  O   VAL A  13       1.539   2.501   1.585  1.00  0.00           O  
ATOM     33  H   VAL A  13      -0.062   6.294   0.470  1.00  0.00           H  
ATOM     34  N   ALA A  14      -0.253   3.583   2.423  1.00  0.00           N  
ATOM     35  CA  ALA A  14      -0.823   2.417   3.068  1.00  0.00           C  
ATOM     36  C   ALA A  14      -1.284   1.406   2.029  1.00  0.00           C  
ATOM     37  O   ALA A  14      -0.889   0.243   2.062  1.00  0.00           O  
ATOM     38  H   ALA A  14      -0.743   4.462   2.507  1.00  0.00           H  
ATOM     39  N   ILE A  15      -2.123   1.870   1.108  1.00  0.00           N  
ATOM     40  CA  ILE A  15      -2.653   1.033   0.050  1.00  0.00           C  
ATOM     41  C   ILE A  15      -1.525   0.346  -0.700  1.00  0.00           C  
ATOM     42  O   ILE A  15      -1.612  -0.836  -1.025  1.00  0.00           O  
ATOM     43  H   ILE A  15      -2.408   2.839   1.138  1.00  0.00           H  
ATOM     44  N   ILE A  16      -0.466   1.105  -0.968  1.00  0.00           N  
ATOM     45  CA  ILE A  16       0.693   0.597  -1.677  1.00  0.00           C  
ATOM     46  C   ILE A  16       1.417  -0.441  -0.837  1.00  0.00           C  
ATOM     47  O   ILE A  16       1.607  -1.578  -1.266  1.00  0.00           O  
ATOM     48  H   ILE A  16      -0.457   2.071  -0.671  1.00  0.00           H  
ATOM     49  N   ILE A  17       1.817  -0.033   0.364  1.00  0.00           N  
ATOM     50  CA  ILE A  17       2.521  -0.904   1.284  1.00  0.00           C  
ATOM     51  C   ILE A  17       1.796  -2.233   1.419  1.00  0.00           C  
ATOM     52  O   ILE A  17       2.420  -3.292   1.443  1.00  0.00           O  
ATOM     53  H   ILE A  17       1.628   0.915   0.656  1.00  0.00           H  
ATOM     54  N   ALA A  18       0.472  -2.159   1.506  1.00  0.00           N  
ATOM     55  CA  ALA A  18      -0.364  -3.337   1.640  1.00  0.00           C  
ATOM     56  C   ALA A  18      -0.307  -4.176   0.373  1.00  0.00           C  
ATOM     57  O   ALA A  18       0.007  -5.363   0.417  1.00  0.00           O  
ATOM     58  H   ALA A  18       0.021  -1.255   1.481  1.00  0.00           H  
ATOM     59  N   ILE A  19      -0.615  -3.538  -0.752  1.00  0.00           N  
ATOM     60  CA  ILE A  19      -0.608  -4.198  -2.044  1.00  0.00           C  
ATOM     61  C   ILE A  19       0.746  -4.838  -2.307  1.00  0.00           C  
ATOM     62  O   ILE A  19       0.830  -6.008  -2.675  1.00  0.00           O  
ATOM     63  H   ILE A  19      -0.864  -2.560  -0.718  1.00  0.00           H  
ATOM     64  N   VAL A  20       1.800  -4.052  -2.111  1.00  0.00           N  
ATOM     65  CA  VAL A  20       3.159  -4.513  -2.319  1.00  0.00           C  
ATOM     66  C   VAL A  20       3.500  -5.623  -1.339  1.00  0.00           C  
ATOM     67  O   VAL A  20       4.023  -6.667  -1.724  1.00  0.00           O  
ATOM     68  H   VAL A  20       1.661  -3.098  -1.808  1.00  0.00           H  
ATOM     69  N   VAL A  21       3.196  -5.381  -0.067  1.00  0.00           N  
ATOM     70  CA  VAL A  21       3.457  -6.340   0.989  1.00  0.00           C  
ATOM     71  C   VAL A  21       2.582  -7.570   0.820  1.00  0.00           C  
ATOM     72  O   VAL A  21       3.080  -8.690   0.721  1.00  0.00           O  
ATOM     73  H   VAL A  21       2.767  -4.501   0.184  1.00  0.00           H  
ATOM     74  N   TRP A  22       1.272  -7.343   0.787  1.00  0.00           N  
ATOM     75  CA  TRP A  22       0.304  -8.412   0.630  1.00  0.00           C  
ATOM     76  C   TRP A  22       0.551  -9.170  -0.663  1.00  0.00           C  
ATOM     77  O   TRP A  22       0.391 -10.387  -0.722  1.00  0.00           O  
ATOM     78  H   TRP A  22       0.928  -6.398   0.873  1.00  0.00           H  
ATOM     79  N   SER A  23       0.944  -8.430  -1.696  1.00  0.00           N  
ATOM     80  CA  SER A  23       1.220  -9.002  -2.999  1.00  0.00           C  
ATOM     81  C   SER A  23       2.447  -9.899  -2.937  1.00  0.00           C  
ATOM     82  O   SER A  23       2.436 -11.018  -3.445  1.00  0.00           O  
ATOM     83  H   SER A  23       1.057  -7.433  -1.580  1.00  0.00           H  
ATOM     84  N   ILE A  24       3.499  -9.389  -2.306  1.00  0.00           N  
ATOM     85  CA  ILE A  24       4.745 -10.119  -2.161  1.00  0.00           C  
ATOM     86  C   ILE A  24       4.508 -11.436  -1.439  1.00  0.00           C  
ATOM     87  O   ILE A  24       5.070 -12.466  -1.806  1.00  0.00           O  
ATOM     88  H   ILE A  24       3.441  -8.462  -1.908  1.00  0.00           H  
ATOM     89  N   VAL A  25       3.668 -11.385  -0.410  1.00  0.00           N  
ATOM     90  CA  VAL A  25       3.338 -12.555   0.380  1.00  0.00           C  
ATOM     91  H   VAL A  25       3.238 -10.505  -0.162  1.00  0.00           H  
TER      92      VAL A  25                                                      
MASTER      110    0    0    1    0    0    0    6   73    1    0    3          
END