PDB Short entry for 1PVI HEADER HYDROLASE/DNA 16-NOV-94 1PVI TITLE STRUCTURE OF PVUII ENDONUCLEASE WITH COGNATE DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3'); COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROTEIN (PVUII (E.C.3.1.21.4)); COMPND 7 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: PROTEUS VULGARIS; SOURCE 5 ORGANISM_TAXID: 585 KEYWDS PROTEIN-DNA COMPLEX, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.CHENG,K.BALENDIRAN,I.SCHILDKRAUT,J.E.ANDERSON REVDAT 4 14-FEB-24 1PVI 1 REMARK REVDAT 3 24-FEB-09 1PVI 1 VERSN REVDAT 2 15-MAY-95 1PVI 1 REMARK REVDAT 1 14-FEB-95 1PVI 0 JRNL AUTH X.CHENG,K.BALENDIRAN,I.SCHILDKRAUT,J.E.ANDERSON JRNL TITL STRUCTURE OF PVUII ENDONUCLEASE WITH COGNATE DNA. JRNL REF EMBO J. V. 13 3927 1994 JRNL REFN ISSN 0261-4189 JRNL PMID 8076590 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.BALENDIRAN,J.BONVENTRE,R.KNOTT,W.JACK,J.BENNER, REMARK 1 AUTH 2 I.SCHILDKRAUT,J.E.ANDERSON REMARK 1 TITL EXPRESSION, PURIFICATION, AND CRYSTALLIZATION OF RESTRICTION REMARK 1 TITL 2 ENDONUCLEASE PVUII WITH DNA CONTAINING ITS RECOGNITION SITE REMARK 1 REF PROTEINS V. 19 77 1994 REMARK 1 REFN ISSN 0887-3585 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 9799 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2570 REMARK 3 NUCLEIC ACID ATOMS : 526 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PVI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175867. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MADNES REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.90000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.25000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 24.25000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.90000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.15000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 94 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR B 94 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OP1 DC D 6 HD22 ASN A 7 4555 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT C 2 C5' DT C 2 C4' 0.082 REMARK 500 DT C 2 C2' DT C 2 C1' 0.065 REMARK 500 DT C 2 N1 DT C 2 C2 0.075 REMARK 500 DT C 2 C2 DT C 2 N3 0.060 REMARK 500 DT C 2 C4 DT C 2 C5 0.059 REMARK 500 DT C 2 C5 DT C 2 C7 0.046 REMARK 500 DG C 3 P DG C 3 O5' 0.081 REMARK 500 DG C 3 C4' DG C 3 C3' -0.068 REMARK 500 DA C 4 O3' DA C 4 C3' -0.042 REMARK 500 DA C 4 N3 DA C 4 C4 0.041 REMARK 500 DC C 5 N1 DC C 5 C2 -0.063 REMARK 500 DC C 6 N1 DC C 6 C2 -0.072 REMARK 500 DC C 6 N1 DC C 6 C6 -0.074 REMARK 500 DC C 6 O3' DA C 7 P -0.074 REMARK 500 DA C 7 C4 DA C 7 C5 -0.049 REMARK 500 DA C 7 C5 DA C 7 N7 0.043 REMARK 500 DG C 8 P DG C 8 O5' 0.082 REMARK 500 DG C 8 C2 DG C 8 N3 -0.057 REMARK 500 DG C 8 C2 DG C 8 N2 -0.070 REMARK 500 DC C 9 P DC C 9 O5' 0.072 REMARK 500 DC C 9 C5' DC C 9 C4' -0.068 REMARK 500 DT C 10 C4 DT C 10 C5 -0.059 REMARK 500 DG C 11 O4' DG C 11 C4' 0.069 REMARK 500 DG C 12 C2' DG C 12 C1' -0.061 REMARK 500 DT C 13 C2' DT C 13 C1' -0.065 REMARK 500 DC C 14 C5' DC C 14 C4' 0.083 REMARK 500 DC C 14 C4' DC C 14 C3' 0.065 REMARK 500 DT D 2 C5' DT D 2 C4' 0.109 REMARK 500 DT D 2 N1 DT D 2 C2 0.079 REMARK 500 DT D 2 C4 DT D 2 C5 0.056 REMARK 500 DT D 2 C5 DT D 2 C7 0.112 REMARK 500 DG D 3 C5' DG D 3 C4' -0.092 REMARK 500 DG D 3 N7 DG D 3 C8 0.040 REMARK 500 DA D 7 P DA D 7 O5' 0.073 REMARK 500 DA D 7 C6 DA D 7 N1 -0.051 REMARK 500 DG D 8 C6 DG D 8 N1 -0.045 REMARK 500 DT D 10 O4' DT D 10 C4' -0.063 REMARK 500 DT D 10 N1 DT D 10 C2 0.074 REMARK 500 DT D 10 C2 DT D 10 N3 0.098 REMARK 500 DT D 10 C2 DT D 10 O2 0.065 REMARK 500 DT D 10 C5 DT D 10 C7 -0.049 REMARK 500 DG D 11 C5' DG D 11 C4' 0.047 REMARK 500 DG D 11 N9 DG D 11 C4 -0.051 REMARK 500 DG D 12 C5' DG D 12 C4' 0.120 REMARK 500 DG D 12 C5 DG D 12 N7 0.037 REMARK 500 DG D 12 C8 DG D 12 N9 0.043 REMARK 500 DT D 13 C2 DT D 13 N3 0.059 REMARK 500 DC D 14 C3' DC D 14 C2' 0.077 REMARK 500 DC D 14 C1' DC D 14 N1 0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 2 C4' - C3' - C2' ANGL. DEV. = -4.6 DEGREES REMARK 500 DT C 2 O4' - C1' - C2' ANGL. DEV. = -10.1 DEGREES REMARK 500 DT C 2 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT C 2 C4 - C5 - C7 ANGL. DEV. = 6.3 DEGREES REMARK 500 DT C 2 C6 - C5 - C7 ANGL. DEV. = -9.8 DEGREES REMARK 500 DT C 2 C3' - O3' - P ANGL. DEV. = 11.3 DEGREES REMARK 500 DG C 3 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DG C 3 C5' - C4' - O4' ANGL. DEV. = 7.1 DEGREES REMARK 500 DG C 3 N9 - C4 - C5 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA C 4 C3' - C2' - C1' ANGL. DEV. = -10.7 DEGREES REMARK 500 DA C 4 O4' - C1' - C2' ANGL. DEV. = -6.6 DEGREES REMARK 500 DA C 4 O4' - C1' - N9 ANGL. DEV. = 7.0 DEGREES REMARK 500 DA C 4 N1 - C6 - N6 ANGL. DEV. = 4.4 DEGREES REMARK 500 DA C 4 C5 - C6 - N6 ANGL. DEV. = -5.0 DEGREES REMARK 500 DA C 4 C3' - O3' - P ANGL. DEV. = -11.2 DEGREES REMARK 500 DC C 5 O4' - C4' - C3' ANGL. DEV. = -4.7 DEGREES REMARK 500 DC C 5 C4' - C3' - C2' ANGL. DEV. = -4.8 DEGREES REMARK 500 DC C 5 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DC C 5 C2 - N3 - C4 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC C 6 O4' - C4' - C3' ANGL. DEV. = -4.1 DEGREES REMARK 500 DC C 6 C4' - C3' - C2' ANGL. DEV. = -8.1 DEGREES REMARK 500 DC C 6 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC C 6 C2 - N3 - C4 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC C 6 N3 - C4 - C5 ANGL. DEV. = -5.9 DEGREES REMARK 500 DC C 6 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES REMARK 500 DA C 7 C3' - C2' - C1' ANGL. DEV. = -7.0 DEGREES REMARK 500 DA C 7 O4' - C1' - C2' ANGL. DEV. = 3.5 DEGREES REMARK 500 DA C 7 N7 - C8 - N9 ANGL. DEV. = -3.5 DEGREES REMARK 500 DA C 7 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 DG C 8 O4' - C4' - C3' ANGL. DEV. = 3.6 DEGREES REMARK 500 DG C 8 O4' - C1' - N9 ANGL. DEV. = 6.6 DEGREES REMARK 500 DG C 8 C2 - N3 - C4 ANGL. DEV. = -3.1 DEGREES REMARK 500 DG C 8 N3 - C2 - N2 ANGL. DEV. = -5.8 DEGREES REMARK 500 DC C 9 C5' - C4' - C3' ANGL. DEV. = -12.0 DEGREES REMARK 500 DC C 9 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 DC C 9 O4' - C1' - N1 ANGL. DEV. = 10.1 DEGREES REMARK 500 DC C 9 C2 - N1 - C1' ANGL. DEV. = -7.1 DEGREES REMARK 500 DC C 9 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DT C 10 C1' - O4' - C4' ANGL. DEV. = -17.7 DEGREES REMARK 500 DT C 10 C4' - C3' - C2' ANGL. DEV. = -13.8 DEGREES REMARK 500 DT C 10 C4 - C5 - C6 ANGL. DEV. = 5.2 DEGREES REMARK 500 DT C 10 C6 - C5 - C7 ANGL. DEV. = -5.2 DEGREES REMARK 500 DT C 10 C3' - O3' - P ANGL. DEV. = 12.3 DEGREES REMARK 500 DG C 11 O4' - C4' - C3' ANGL. DEV. = 10.0 DEGREES REMARK 500 DG C 11 C5' - C4' - C3' ANGL. DEV. = -14.5 DEGREES REMARK 500 DG C 11 C5' - C4' - O4' ANGL. DEV. = 10.1 DEGREES REMARK 500 DG C 11 C1' - O4' - C4' ANGL. DEV. = -9.4 DEGREES REMARK 500 DG C 11 C4' - C3' - C2' ANGL. DEV. = -10.2 DEGREES REMARK 500 DG C 11 O4' - C1' - N9 ANGL. DEV. = 9.3 DEGREES REMARK 500 DG C 11 C2 - N3 - C4 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 151 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 40 -32.48 -38.62 REMARK 500 ALA A 63 15.43 -143.05 REMARK 500 THR A 82 -84.19 -129.28 REMARK 500 HIS A 85 79.47 -150.60 REMARK 500 ARG A 95 -53.74 -28.54 REMARK 500 SER A 133 52.34 -69.92 REMARK 500 ASP A 134 -9.60 -168.52 REMARK 500 PRO B 52 151.47 -44.47 REMARK 500 ASN B 62 6.63 -58.53 REMARK 500 ILE B 74 -15.58 -48.22 REMARK 500 LEU B 76 -8.32 -152.55 REMARK 500 THR B 82 -76.74 -123.97 REMARK 500 ARG B 95 -11.44 -47.85 REMARK 500 ILE B 107 68.47 -117.33 REMARK 500 ASN B 141 60.14 60.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT C 2 0.10 SIDE CHAIN REMARK 500 DA C 7 0.06 SIDE CHAIN REMARK 500 DG C 8 0.06 SIDE CHAIN REMARK 500 DG C 11 0.07 SIDE CHAIN REMARK 500 DT C 13 0.11 SIDE CHAIN REMARK 500 DT D 2 0.11 SIDE CHAIN REMARK 500 DG D 3 0.06 SIDE CHAIN REMARK 500 DC D 6 0.12 SIDE CHAIN REMARK 500 DC D 9 0.06 SIDE CHAIN REMARK 500 DG D 12 0.06 SIDE CHAIN REMARK 500 DT D 13 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1PVI A 1 157 UNP P23657 T2P2_PROVU 1 157 DBREF 1PVI B 1 157 UNP P23657 T2P2_PROVU 1 157 DBREF 1PVI C 2 14 PDB 1PVI 1PVI 2 14 DBREF 1PVI D 2 14 PDB 1PVI 1PVI 2 14 SEQRES 1 C 13 DT DG DA DC DC DA DG DC DT DG DG DT DC SEQRES 1 D 13 DT DG DA DC DC DA DG DC DT DG DG DT DC SEQRES 1 A 157 MET SER HIS PRO ASP LEU ASN LYS LEU LEU GLU LEU TRP SEQRES 2 A 157 PRO HIS ILE GLN GLU TYR GLN ASP LEU ALA LEU LYS HIS SEQRES 3 A 157 GLY ILE ASN ASP ILE PHE GLN ASP ASN GLY GLY LYS LEU SEQRES 4 A 157 LEU GLN VAL LEU LEU ILE THR GLY LEU THR VAL LEU PRO SEQRES 5 A 157 GLY ARG GLU GLY ASN ASP ALA VAL ASP ASN ALA GLY GLN SEQRES 6 A 157 GLU TYR GLU LEU LYS SER ILE ASN ILE ASP LEU THR LYS SEQRES 7 A 157 GLY PHE SER THR HIS HIS HIS MET ASN PRO VAL ILE ILE SEQRES 8 A 157 ALA LYS TYR ARG GLN VAL PRO TRP ILE PHE ALA ILE TYR SEQRES 9 A 157 ARG GLY ILE ALA ILE GLU ALA ILE TYR ARG LEU GLU PRO SEQRES 10 A 157 LYS ASP LEU GLU PHE TYR TYR ASP LYS TRP GLU ARG LYS SEQRES 11 A 157 TRP TYR SER ASP GLY HIS LYS ASP ILE ASN ASN PRO LYS SEQRES 12 A 157 ILE PRO VAL LYS TYR VAL MET GLU HIS GLY THR LYS ILE SEQRES 13 A 157 TYR SEQRES 1 B 157 MET SER HIS PRO ASP LEU ASN LYS LEU LEU GLU LEU TRP SEQRES 2 B 157 PRO HIS ILE GLN GLU TYR GLN ASP LEU ALA LEU LYS HIS SEQRES 3 B 157 GLY ILE ASN ASP ILE PHE GLN ASP ASN GLY GLY LYS LEU SEQRES 4 B 157 LEU GLN VAL LEU LEU ILE THR GLY LEU THR VAL LEU PRO SEQRES 5 B 157 GLY ARG GLU GLY ASN ASP ALA VAL ASP ASN ALA GLY GLN SEQRES 6 B 157 GLU TYR GLU LEU LYS SER ILE ASN ILE ASP LEU THR LYS SEQRES 7 B 157 GLY PHE SER THR HIS HIS HIS MET ASN PRO VAL ILE ILE SEQRES 8 B 157 ALA LYS TYR ARG GLN VAL PRO TRP ILE PHE ALA ILE TYR SEQRES 9 B 157 ARG GLY ILE ALA ILE GLU ALA ILE TYR ARG LEU GLU PRO SEQRES 10 B 157 LYS ASP LEU GLU PHE TYR TYR ASP LYS TRP GLU ARG LYS SEQRES 11 B 157 TRP TYR SER ASP GLY HIS LYS ASP ILE ASN ASN PRO LYS SEQRES 12 B 157 ILE PRO VAL LYS TYR VAL MET GLU HIS GLY THR LYS ILE SEQRES 13 B 157 TYR HELIX 1 1 PRO A 4 HIS A 26 5 23 HELIX 2 2 GLY A 36 THR A 46 1 11 HELIX 3 3 PRO A 88 ARG A 95 1 8 HELIX 4 4 PRO A 117 TYR A 132 1 16 HELIX 5 5 VAL A 146 HIS A 152 1 7 HELIX 6 6 PRO B 4 HIS B 26 5 23 HELIX 7 7 GLY B 36 THR B 46 1 11 HELIX 8 8 PRO B 88 LYS B 93 1 6 HELIX 9 9 PRO B 117 ASP B 134 1 18 HELIX 10 10 VAL B 146 MET B 150 1 5 SHEET 1 A 4 ASP A 58 VAL A 60 0 SHEET 2 A 4 GLU A 66 ASN A 73 -1 N TYR A 67 O ALA A 59 SHEET 3 A 4 PRO A 98 ARG A 105 1 N PRO A 98 O GLU A 68 SHEET 4 A 4 ALA A 108 LEU A 115 -1 N LEU A 115 O TRP A 99 SHEET 1 B 3 TYR B 67 ASN B 73 0 SHEET 2 B 3 PRO B 98 TYR B 104 1 N PRO B 98 O GLU B 68 SHEET 3 B 3 ILE B 109 LEU B 115 -1 N LEU B 115 O TRP B 99 CRYST1 95.800 86.300 48.500 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010438 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011587 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020619 0.00000