PDB Short entry for 1Q02
HEADER    PROTEIN BINDING                         15-JUL-03   1Q02              
TITLE     NMR STRUCTURE OF THE UBA DOMAIN OF P62 (SQSTM1)                       
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: SEQUESTOSOME 1;                                            
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: UBA DOMAIN;                                                
COMPND   5 SYNONYM: UBIQUITIN-BINDING PROTEIN P62, SQSTM1;                      
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: XL-10 GOLD;                                
SOURCE   8 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1                                 
KEYWDS    HELICAL BUNDLE, PROTEIN BINDING                                       
EXPDTA    SOLUTION NMR                                                          
NUMMDL    27                                                                    
AUTHOR    B.CIANI,R.LAYFIELD,J.R.CAVEY,P.W.SHEPPARD,M.S.SEARLE                  
REVDAT   3   02-MAR-22 1Q02    1       REMARK SEQADV                            
REVDAT   2   24-FEB-09 1Q02    1       VERSN                                    
REVDAT   1   30-SEP-03 1Q02    0                                                
JRNL        AUTH   B.CIANI,R.LAYFIELD,J.R.CAVEY,P.W.SHEPPARD,M.S.SEARLE         
JRNL        TITL   STRUCTURE OF THE UBIQUITIN-ASSOCIATED DOMAIN OF P62 (SQSTM1) 
JRNL        TITL 2 AND IMPLICATIONS FOR MUTATIONS THAT CAUSE PAGET'S DISEASE OF 
JRNL        TITL 3 BONE                                                         
JRNL        REF    J.BIOL.CHEM.                  V. 278 37409 2003              
JRNL        REFN                   ISSN 0021-9258                               
JRNL        PMID   12857745                                                     
JRNL        DOI    10.1074/JBC.M307416200                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : XWINNMR 2.5, X-PLOR 3.1                              
REMARK   3   AUTHORS     : BRUKER (XWINNMR), BRUNGER, AT (X-PLOR)               
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 1Q02 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-03.                  
REMARK 100 THE DEPOSITION ID IS D_1000019746.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298; 308                           
REMARK 210  PH                             : 5.8; 5.8                           
REMARK 210  IONIC STRENGTH                 : 50MM POTASSIUM PHOSPHATE; 50MM     
REMARK 210                                   POTASSIUM PHOSPHATE                
REMARK 210  PRESSURE                       : AMBIENT; AMBIENT                   
REMARK 210  SAMPLE CONTENTS                : 2MM UBA, PHOSPHATE BUFFER PH       
REMARK 210                                   5.8, 10% D2O, 90% H2O; 2MM UBA,    
REMARK 210                                   PHOSPHATE BUFFER PH 5.8, 90% D2O,  
REMARK 210                                   10% H2O                            
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D NOESY; 2D TOCSY; DQF-COSY       
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : X-PLOR 3.1, ANSIG 3.3              
REMARK 210   METHOD USED                   : RESTRAINED SIMULATED ANNEALING     
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 27                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH ACCEPTABLE         
REMARK 210                                   COVALENT GEOMETRY,STRUCTURES       
REMARK 210                                   WITH THE LEAST RESTRAINT           
REMARK 210                                   VIOLATIONS,STRUCTURES WITH THE     
REMARK 210                                   LOWEST ENERGY                      
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    LEU A    32     H    LYS A    36              1.42            
REMARK 500   O    ASP A    39     H    ALA A    43              1.43            
REMARK 500   O    LYS A    36     H    ASP A    39              1.49            
REMARK 500   O    LEU A    33     H    TYR A    38              1.50            
REMARK 500   O    ALA A    43     H    ILE A    47              1.52            
REMARK 500   O    TRP A    28     H    LEU A    32              1.55            
REMARK 500   OD1  ASP A    24     H    LEU A    29              1.58            
REMARK 500   O    LEU A    44     H    GLN A    48              1.58            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A   2       75.99   -165.68                                   
REMARK 500  1 MET A  20      -63.80   -103.68                                   
REMARK 500  1 SER A  23     -158.24   -105.82                                   
REMARK 500  1 ASP A  24       38.54   -175.80                                   
REMARK 500  1 GLU A  25      -70.82    -39.00                                   
REMARK 500  1 LYS A  36       40.77    -87.63                                   
REMARK 500  1 ASN A  37       50.32     34.04                                   
REMARK 500  1 ASP A  39       39.20    -84.13                                   
REMARK 500  1 TYR A  49       86.29     37.42                                   
REMARK 500  2 GLU A   5       49.89   -106.98                                   
REMARK 500  2 ALA A   6      -78.42   -179.04                                   
REMARK 500  2 ASP A   7       78.99     42.11                                   
REMARK 500  2 SER A  23     -142.07    -62.45                                   
REMARK 500  2 ASP A  24       30.40   -169.25                                   
REMARK 500  2 ASN A  37       64.40     38.01                                   
REMARK 500  2 TYR A  49       27.73     40.13                                   
REMARK 500  2 SER A  50       70.07     41.77                                   
REMARK 500  3 SER A   2       85.78   -166.76                                   
REMARK 500  3 ALA A   6      -49.01   -163.34                                   
REMARK 500  3 MET A  20      -47.14   -135.82                                   
REMARK 500  3 SER A  23     -139.18    -58.33                                   
REMARK 500  3 ASP A  24       29.20   -173.78                                   
REMARK 500  3 LYS A  36       32.59   -148.59                                   
REMARK 500  3 TYR A  49     -167.37     41.73                                   
REMARK 500  3 SER A  50      -74.27    169.71                                   
REMARK 500  3 LYS A  51       74.69     53.67                                   
REMARK 500  4 MET A  20      -62.65   -133.67                                   
REMARK 500  4 SER A  23     -154.13   -111.72                                   
REMARK 500  4 ASP A  24       36.25   -155.48                                   
REMARK 500  4 ASN A  37       71.23     50.31                                   
REMARK 500  4 TYR A  38       46.94     27.29                                   
REMARK 500  4 ILE A  40      -74.46    -47.80                                   
REMARK 500  4 TYR A  49       38.47     35.90                                   
REMARK 500  5 MET A  20      -53.93   -133.39                                   
REMARK 500  5 SER A  23     -151.04    -96.08                                   
REMARK 500  5 ASP A  24       22.22   -156.28                                   
REMARK 500  5 GLU A  25       98.72    -49.45                                   
REMARK 500  5 LYS A  36       47.08   -142.02                                   
REMARK 500  5 ASN A  37       72.42     49.03                                   
REMARK 500  5 ASP A  39       32.64    -96.11                                   
REMARK 500  5 ILE A  40      -80.29    -45.32                                   
REMARK 500  5 TYR A  49       71.91     62.02                                   
REMARK 500  6 SER A   2       70.13     53.60                                   
REMARK 500  6 GLU A   5       66.88   -150.26                                   
REMARK 500  6 MET A  20      -63.28   -105.51                                   
REMARK 500  6 SER A  23     -150.50   -108.12                                   
REMARK 500  6 ASP A  24       38.18   -160.79                                   
REMARK 500  6 TYR A  38       53.95     31.28                                   
REMARK 500  6 TYR A  49       75.47     35.54                                   
REMARK 500  7 SER A   2      -58.48    174.97                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     257 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500  1 ARG A   9         0.25    SIDE CHAIN                              
REMARK 500  1 ARG A  31         0.30    SIDE CHAIN                              
REMARK 500  2 ARG A   9         0.32    SIDE CHAIN                              
REMARK 500  2 ARG A  31         0.28    SIDE CHAIN                              
REMARK 500  3 ARG A   9         0.15    SIDE CHAIN                              
REMARK 500  3 ARG A  31         0.23    SIDE CHAIN                              
REMARK 500  4 ARG A   9         0.20    SIDE CHAIN                              
REMARK 500  4 ARG A  31         0.32    SIDE CHAIN                              
REMARK 500  5 ARG A   9         0.30    SIDE CHAIN                              
REMARK 500  5 ARG A  31         0.14    SIDE CHAIN                              
REMARK 500  6 ARG A   9         0.23    SIDE CHAIN                              
REMARK 500  6 ARG A  31         0.28    SIDE CHAIN                              
REMARK 500  7 ARG A   9         0.28    SIDE CHAIN                              
REMARK 500  7 ARG A  31         0.31    SIDE CHAIN                              
REMARK 500  8 ARG A   9         0.27    SIDE CHAIN                              
REMARK 500  8 ARG A  31         0.27    SIDE CHAIN                              
REMARK 500  9 ARG A   9         0.23    SIDE CHAIN                              
REMARK 500  9 ARG A  31         0.20    SIDE CHAIN                              
REMARK 500 10 ARG A   9         0.30    SIDE CHAIN                              
REMARK 500 10 ARG A  31         0.32    SIDE CHAIN                              
REMARK 500 11 ARG A   9         0.19    SIDE CHAIN                              
REMARK 500 11 ARG A  31         0.26    SIDE CHAIN                              
REMARK 500 12 ARG A   9         0.31    SIDE CHAIN                              
REMARK 500 12 ARG A  31         0.30    SIDE CHAIN                              
REMARK 500 13 ARG A   9         0.22    SIDE CHAIN                              
REMARK 500 13 ARG A  31         0.25    SIDE CHAIN                              
REMARK 500 14 ARG A   9         0.31    SIDE CHAIN                              
REMARK 500 14 ARG A  31         0.32    SIDE CHAIN                              
REMARK 500 15 ARG A   9         0.27    SIDE CHAIN                              
REMARK 500 15 ARG A  31         0.31    SIDE CHAIN                              
REMARK 500 16 ARG A   9         0.24    SIDE CHAIN                              
REMARK 500 16 ARG A  31         0.32    SIDE CHAIN                              
REMARK 500 17 ARG A  31         0.27    SIDE CHAIN                              
REMARK 500 18 ARG A   9         0.30    SIDE CHAIN                              
REMARK 500 18 ARG A  31         0.29    SIDE CHAIN                              
REMARK 500 19 ARG A   9         0.30    SIDE CHAIN                              
REMARK 500 19 ARG A  31         0.21    SIDE CHAIN                              
REMARK 500 20 ARG A   9         0.20    SIDE CHAIN                              
REMARK 500 20 ARG A  31         0.31    SIDE CHAIN                              
REMARK 500 21 ARG A   9         0.27    SIDE CHAIN                              
REMARK 500 21 ARG A  31         0.26    SIDE CHAIN                              
REMARK 500 22 ARG A   9         0.15    SIDE CHAIN                              
REMARK 500 22 ARG A  31         0.27    SIDE CHAIN                              
REMARK 500 23 ARG A   9         0.27    SIDE CHAIN                              
REMARK 500 23 ARG A  31         0.31    SIDE CHAIN                              
REMARK 500 24 ARG A   9         0.27    SIDE CHAIN                              
REMARK 500 24 ARG A  31         0.29    SIDE CHAIN                              
REMARK 500 25 ARG A   9         0.28    SIDE CHAIN                              
REMARK 500 25 ARG A  31         0.32    SIDE CHAIN                              
REMARK 500 26 ARG A   9         0.32    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS      53 PLANE DEVIATIONS.                             
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  1Q02 A    3    52  UNP    Q13501   SQSTM_HUMAN    387    436             
SEQADV 1Q02 GLY A    1  UNP  Q13501              CLONING ARTIFACT               
SEQADV 1Q02 SER A    2  UNP  Q13501              CLONING ARTIFACT               
SEQRES   1 A   52  GLY SER PRO PRO GLU ALA ASP PRO ARG LEU ILE GLU SER          
SEQRES   2 A   52  LEU SER GLN MET LEU SER MET GLY PHE SER ASP GLU GLY          
SEQRES   3 A   52  GLY TRP LEU THR ARG LEU LEU GLN THR LYS ASN TYR ASP          
SEQRES   4 A   52  ILE GLY ALA ALA LEU ASP THR ILE GLN TYR SER LYS HIS          
HELIX    1   1 ASP A    7  SER A   19  1                                  13    
HELIX    2   2 GLY A   27  LYS A   36  1                                  10    
HELIX    3   3 ASP A   39  GLN A   48  1                                  10    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000