PDB Short entry for 1Q5U HEADER HYDROLASE 11-AUG-03 1Q5U TITLE HUMAN DUTP PYROPHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUTP PYROPHOSPHATASE; COMPND 3 CHAIN: X, Y, Z; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HDUT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PEM409 KEYWDS DNA REPAIR, ENZYME-DNA INTERACTIONS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.D.MOL,J.M.HARRIS,E.M.MCINTOSH,J.A.TAINER REVDAT 4 16-AUG-23 1Q5U 1 SEQADV REVDAT 3 13-JUL-11 1Q5U 1 VERSN REVDAT 2 24-FEB-09 1Q5U 1 VERSN REVDAT 1 19-AUG-03 1Q5U 0 JRNL AUTH C.D.MOL,J.M.HARRIS,E.M.MCINTOSH,J.A.TAINER JRNL TITL HUMAN DUTP PYROPHOSPHATASE: URACIL RECOGNITION BY A BETA JRNL TITL 2 HAIRPIN AND ACTIVE SITES FORMED BY THREE SEPARATE SUBUNITS JRNL REF STRUCTURE V. 4 1077 1996 JRNL REFN ISSN 0969-2126 JRNL PMID 8805593 JRNL DOI 10.1016/S0969-2126(96)00114-1 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 27503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1467 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2040 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3057 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 304 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.84000 REMARK 3 B22 (A**2) : -0.67000 REMARK 3 B33 (A**2) : 1.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.188 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.617 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3127 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4224 ; 0.987 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 387 ; 5.821 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 449 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2425 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1050 ; 0.168 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 246 ; 0.126 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.149 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.128 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1932 ; 0.374 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3087 ; 0.746 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1195 ; 1.210 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1137 ; 2.061 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X -2 X 128 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5480 36.9850 8.3170 REMARK 3 T TENSOR REMARK 3 T11: 0.1006 T22: 0.0834 REMARK 3 T33: 0.0620 T12: 0.0102 REMARK 3 T13: -0.0282 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.7187 L22: 1.1590 REMARK 3 L33: 3.2333 L12: 0.2101 REMARK 3 L13: 0.4316 L23: 0.3785 REMARK 3 S TENSOR REMARK 3 S11: -0.0170 S12: 0.0904 S13: -0.0317 REMARK 3 S21: -0.2032 S22: -0.0639 S23: 0.1547 REMARK 3 S31: -0.0059 S32: -0.2253 S33: 0.0809 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Y 0 Y 126 REMARK 3 ORIGIN FOR THE GROUP (A): 15.4820 24.2260 19.5560 REMARK 3 T TENSOR REMARK 3 T11: 0.0233 T22: 0.0484 REMARK 3 T33: 0.0056 T12: -0.0020 REMARK 3 T13: 0.0019 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 2.0099 L22: 1.9710 REMARK 3 L33: 0.9869 L12: -0.9885 REMARK 3 L13: -0.1024 L23: 0.0358 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: -0.0057 S13: -0.0949 REMARK 3 S21: 0.0079 S22: -0.0034 S23: 0.0723 REMARK 3 S31: 0.0005 S32: -0.0530 S33: 0.0252 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Z -5 Z 126 REMARK 3 ORIGIN FOR THE GROUP (A): 14.0460 43.1010 24.8330 REMARK 3 T TENSOR REMARK 3 T11: 0.0458 T22: 0.0525 REMARK 3 T33: 0.0307 T12: 0.0069 REMARK 3 T13: -0.0009 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.3294 L22: 1.5149 REMARK 3 L33: 0.9930 L12: 0.1206 REMARK 3 L13: 0.0506 L23: 0.3388 REMARK 3 S TENSOR REMARK 3 S11: 0.0107 S12: 0.0267 S13: 0.1078 REMARK 3 S21: -0.1210 S22: 0.0091 S23: 0.0349 REMARK 3 S31: -0.1143 S32: -0.0327 S33: -0.0197 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Q5U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-03. REMARK 100 THE DEPOSITION ID IS D_1000019953. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-95 REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29007 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : 0.09100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.45300 REMARK 200 R SYM FOR SHELL (I) : 0.45300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1DUP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1M SODIUM CITRATE, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.49550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.33300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.49550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.33300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS THE BIOLOGICALLY-RELEVANT REMARK 300 TRIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, Y, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS X -5 REMARK 465 HIS X -4 REMARK 465 HIS X -3 REMARK 465 GLU X 129 REMARK 465 ARG X 130 REMARK 465 GLY X 131 REMARK 465 SER X 132 REMARK 465 GLY X 133 REMARK 465 GLY X 134 REMARK 465 PHE X 135 REMARK 465 GLY X 136 REMARK 465 SER X 137 REMARK 465 THR X 138 REMARK 465 GLY X 139 REMARK 465 LYS X 140 REMARK 465 ASN X 141 REMARK 465 HIS Y -5 REMARK 465 HIS Y -4 REMARK 465 HIS Y -3 REMARK 465 HIS Y -2 REMARK 465 HIS Y -1 REMARK 465 ASP Y 127 REMARK 465 THR Y 128 REMARK 465 GLU Y 129 REMARK 465 ARG Y 130 REMARK 465 GLY Y 131 REMARK 465 SER Y 132 REMARK 465 GLY Y 133 REMARK 465 GLY Y 134 REMARK 465 PHE Y 135 REMARK 465 GLY Y 136 REMARK 465 SER Y 137 REMARK 465 THR Y 138 REMARK 465 GLY Y 139 REMARK 465 LYS Y 140 REMARK 465 ASN Y 141 REMARK 465 ASP Z 127 REMARK 465 THR Z 128 REMARK 465 GLU Z 129 REMARK 465 ARG Z 130 REMARK 465 GLY Z 131 REMARK 465 SER Z 132 REMARK 465 GLY Z 133 REMARK 465 GLY Z 134 REMARK 465 PHE Z 135 REMARK 465 GLY Z 136 REMARK 465 SER Z 137 REMARK 465 THR Z 138 REMARK 465 GLY Z 139 REMARK 465 LYS Z 140 REMARK 465 ASN Z 141 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL Y 122 CG1 CG2 REMARK 470 VAL Z 122 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP X 72 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP X 79 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP X 127 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP Y 32 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP Y 72 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP Z 32 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP Z 72 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP Z 79 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA X 75 -124.64 44.84 REMARK 500 TYR X 116 75.03 -118.52 REMARK 500 ALA Y 75 -124.46 51.14 REMARK 500 ALA Z 75 -120.20 47.41 REMARK 500 TYR Z 116 69.65 -117.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q5H RELATED DB: PDB REMARK 900 HUMAN DUTP PYROPHOSPHATASE COMPLEXED WITH DUDP DBREF 1Q5U X 1 141 UNP P33316 DUT_HUMAN 24 164 DBREF 1Q5U Y 1 141 UNP P33316 DUT_HUMAN 24 164 DBREF 1Q5U Z 1 141 UNP P33316 DUT_HUMAN 24 164 SEQADV 1Q5U HIS X -5 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS X -4 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS X -3 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS X -2 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS X -1 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS X 0 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Y -5 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Y -4 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Y -3 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Y -2 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Y -1 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Y 0 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Z -5 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Z -4 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Z -3 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Z -2 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Z -1 UNP P33316 EXPRESSION TAG SEQADV 1Q5U HIS Z 0 UNP P33316 EXPRESSION TAG SEQRES 1 X 147 HIS HIS HIS HIS HIS HIS MET GLN LEU ARG PHE ALA ARG SEQRES 2 X 147 LEU SER GLU HIS ALA THR ALA PRO THR ARG GLY SER ALA SEQRES 3 X 147 ARG ALA ALA GLY TYR ASP LEU TYR SER ALA TYR ASP TYR SEQRES 4 X 147 THR ILE PRO PRO MET GLU LYS ALA VAL VAL LYS THR ASP SEQRES 5 X 147 ILE GLN ILE ALA LEU PRO SER GLY CYS TYR GLY ARG VAL SEQRES 6 X 147 ALA PRO ARG SER GLY LEU ALA ALA LYS HIS PHE ILE ASP SEQRES 7 X 147 VAL GLY ALA GLY VAL ILE ASP GLU ASP TYR ARG GLY ASN SEQRES 8 X 147 VAL GLY VAL VAL LEU PHE ASN PHE GLY LYS GLU LYS PHE SEQRES 9 X 147 GLU VAL LYS LYS GLY ASP ARG ILE ALA GLN LEU ILE CYS SEQRES 10 X 147 GLU ARG ILE PHE TYR PRO GLU ILE GLU GLU VAL GLN ALA SEQRES 11 X 147 LEU ASP ASP THR GLU ARG GLY SER GLY GLY PHE GLY SER SEQRES 12 X 147 THR GLY LYS ASN SEQRES 1 Y 147 HIS HIS HIS HIS HIS HIS MET GLN LEU ARG PHE ALA ARG SEQRES 2 Y 147 LEU SER GLU HIS ALA THR ALA PRO THR ARG GLY SER ALA SEQRES 3 Y 147 ARG ALA ALA GLY TYR ASP LEU TYR SER ALA TYR ASP TYR SEQRES 4 Y 147 THR ILE PRO PRO MET GLU LYS ALA VAL VAL LYS THR ASP SEQRES 5 Y 147 ILE GLN ILE ALA LEU PRO SER GLY CYS TYR GLY ARG VAL SEQRES 6 Y 147 ALA PRO ARG SER GLY LEU ALA ALA LYS HIS PHE ILE ASP SEQRES 7 Y 147 VAL GLY ALA GLY VAL ILE ASP GLU ASP TYR ARG GLY ASN SEQRES 8 Y 147 VAL GLY VAL VAL LEU PHE ASN PHE GLY LYS GLU LYS PHE SEQRES 9 Y 147 GLU VAL LYS LYS GLY ASP ARG ILE ALA GLN LEU ILE CYS SEQRES 10 Y 147 GLU ARG ILE PHE TYR PRO GLU ILE GLU GLU VAL GLN ALA SEQRES 11 Y 147 LEU ASP ASP THR GLU ARG GLY SER GLY GLY PHE GLY SER SEQRES 12 Y 147 THR GLY LYS ASN SEQRES 1 Z 147 HIS HIS HIS HIS HIS HIS MET GLN LEU ARG PHE ALA ARG SEQRES 2 Z 147 LEU SER GLU HIS ALA THR ALA PRO THR ARG GLY SER ALA SEQRES 3 Z 147 ARG ALA ALA GLY TYR ASP LEU TYR SER ALA TYR ASP TYR SEQRES 4 Z 147 THR ILE PRO PRO MET GLU LYS ALA VAL VAL LYS THR ASP SEQRES 5 Z 147 ILE GLN ILE ALA LEU PRO SER GLY CYS TYR GLY ARG VAL SEQRES 6 Z 147 ALA PRO ARG SER GLY LEU ALA ALA LYS HIS PHE ILE ASP SEQRES 7 Z 147 VAL GLY ALA GLY VAL ILE ASP GLU ASP TYR ARG GLY ASN SEQRES 8 Z 147 VAL GLY VAL VAL LEU PHE ASN PHE GLY LYS GLU LYS PHE SEQRES 9 Z 147 GLU VAL LYS LYS GLY ASP ARG ILE ALA GLN LEU ILE CYS SEQRES 10 Z 147 GLU ARG ILE PHE TYR PRO GLU ILE GLU GLU VAL GLN ALA SEQRES 11 Z 147 LEU ASP ASP THR GLU ARG GLY SER GLY GLY PHE GLY SER SEQRES 12 Z 147 THR GLY LYS ASN FORMUL 4 HOH *304(H2 O) HELIX 1 1 ARG X 62 PHE X 70 1 9 HELIX 2 2 ARG Y 62 PHE Y 70 1 9 HELIX 3 3 ARG Z 62 PHE Z 70 1 9 SHEET 1 A 3 ILE X 47 ALA X 50 0 SHEET 2 A 3 GLN X 2 ARG X 7 -1 N ARG X 4 O ALA X 50 SHEET 3 A 3 GLU Y 118 GLU Y 121 1 O GLU Y 118 N LEU X 3 SHEET 1 B 4 TYR X 25 TYR X 28 0 SHEET 2 B 4 ARG X 105 ARG X 113 -1 O LEU X 109 N TYR X 25 SHEET 3 B 4 CYS X 55 ALA X 60 -1 N ALA X 60 O GLN X 108 SHEET 4 B 4 VAL X 77 ILE X 78 -1 O ILE X 78 N GLY X 57 SHEET 1 C 2 TYR X 33 ILE X 35 0 SHEET 2 C 2 PHE X 98 VAL X 100 -1 O VAL X 100 N TYR X 33 SHEET 1 D 3 GLU X 39 LYS X 44 0 SHEET 2 D 3 GLY X 87 ASN X 92 -1 O VAL X 88 N VAL X 43 SHEET 3 D 3 ILE X 71 GLY X 74 -1 N ASP X 72 O PHE X 91 SHEET 1 E 3 ILE X 119 GLU X 121 0 SHEET 2 E 3 LEU Z 3 ARG Z 7 1 O LEU Z 3 N GLU X 120 SHEET 3 E 3 ILE Z 47 ALA Z 50 -1 O ALA Z 50 N ARG Z 4 SHEET 1 F 3 ILE Y 47 ALA Y 50 0 SHEET 2 F 3 LEU Y 3 ARG Y 7 -1 N ARG Y 4 O ALA Y 50 SHEET 3 F 3 ILE Z 119 GLU Z 121 1 O GLU Z 120 N LEU Y 3 SHEET 1 G 4 GLY Y 24 TYR Y 28 0 SHEET 2 G 4 ARG Y 105 ARG Y 113 -1 O LEU Y 109 N TYR Y 25 SHEET 3 G 4 CYS Y 55 ALA Y 60 -1 N ALA Y 60 O GLN Y 108 SHEET 4 G 4 VAL Y 77 ILE Y 78 -1 O ILE Y 78 N GLY Y 57 SHEET 1 H 2 TYR Y 33 ILE Y 35 0 SHEET 2 H 2 PHE Y 98 VAL Y 100 -1 O VAL Y 100 N TYR Y 33 SHEET 1 I 3 GLU Y 39 LYS Y 44 0 SHEET 2 I 3 GLY Y 87 ASN Y 92 -1 O VAL Y 88 N VAL Y 43 SHEET 3 I 3 ILE Y 71 GLY Y 74 -1 N ASP Y 72 O PHE Y 91 SHEET 1 J 4 TYR Z 25 TYR Z 28 0 SHEET 2 J 4 ARG Z 105 ARG Z 113 -1 O LEU Z 109 N TYR Z 25 SHEET 3 J 4 CYS Z 55 ALA Z 60 -1 N ALA Z 60 O GLN Z 108 SHEET 4 J 4 VAL Z 77 ILE Z 78 -1 O ILE Z 78 N GLY Z 57 SHEET 1 K 2 TYR Z 33 ILE Z 35 0 SHEET 2 K 2 PHE Z 98 VAL Z 100 -1 O VAL Z 100 N TYR Z 33 SHEET 1 L 3 GLU Z 39 LYS Z 44 0 SHEET 2 L 3 GLY Z 87 ASN Z 92 -1 O VAL Z 88 N VAL Z 43 SHEET 3 L 3 ILE Z 71 GLY Z 74 -1 N ASP Z 72 O PHE Z 91 CRYST1 72.991 110.666 52.954 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013700 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009036 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018884 0.00000